LOCUS       XM_017596603            5250 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SATB homeobox 2 (Satb2), transcript
            variant X2, mRNA.
ACCESSION   XM_017596603
VERSION     XM_017596603.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017596603.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017596603.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5250
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5250
                     /gene="Satb2"
                     /gene_synonym="RGD1562369"
                     /note="SATB homeobox 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 13 ESTs, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 14 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:501145"
                     /db_xref="RGD:1562369"
     CDS             287..2509
                     /gene="Satb2"
                     /gene_synonym="RGD1562369"
                     /codon_start=1
                     /product="DNA-binding protein SATB2 isoform X1"
                     /protein_id="XP_017452092.1"
                     /db_xref="GeneID:501145"
                     /db_xref="RGD:1562369"
                     /translation="MERRSESPCLRDSPDRRSGSPDVKGPPPVKVARLEQNGSPMGAR
                     GRPNGAVAKAVGGNSPELGGLMIPVFCVVEQLDGSLEYDNREEHAEFVLVRKDVLFSQ
                     LVETALLALGYSHSSAAQAQGIIKLGRWNPLPLSYVTDAPDATVADMLQDVYHVVTLK
                     IQLQSCSKLEDLPAEQWNHATVRNALKELLKEMNQSTLAKECPLSQSMISSIVNSTYY
                     ANVSATKCQEFGRWYKKYKKIKVERVERENLSDYCVLGQRPMHLPNMNQLASLGKTNE
                     QSPHSQIHHSTPIRNQVPALQPIMSPGLLSPQLSPQLVRQQIAMAHLINQQIAVSRLL
                     AHQHPQAINQQFLNHPPIPRAVKPEPTNSSVEVSPDIYQQVRDELKRASVSQAVFARV
                     AFNRTQGLLSEILRKEEDPRTASQSLLVNLRAMQNFLNLPEVERDRIYQDERERSMNP
                     NVSMVSSASSSPSSSRTPQAKTSTPTTDLPIKVDGANVNITAAIYDEIQQEMKRAKVS
                     QALFAKVAANKSQGWLCELLRWKENPSPENRTLWENLCTIRRFLNLPQHERDVIYEEE
                     SRHHHSERMQHVVQLPPEPVQVLHRQQSQPTKESSPPREEAPPPPPPTEDSCAKKPRS
                     RTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHHGK
                     LKEHLGSAVDVAEYKDEELLTESEENDSEEGSDEMYKVEAEEESAEKNKVAPAETDQR
                     "
ORIGIN      
        1 taggtaacca acaaatccaa ttactaagct ttattgatac taaaaggaaa agttcccctc
       61 gtaaaatttc tctgagctta ttagttattt aaatcaacct cggggctgga cctgagacgc
      121 ccagggcacc ttctttggct cttggagaag tcctgaagtc ctaatatcat caattcttct
      181 tagttcgtgg acattgggcc ggaggattct gtagttccaa caccaaggtc cctgcgcgtt
      241 ttattgcgac ctgccggtgg gaactttgtc tccaaatcgg agcagcatgg agcggcggag
      301 cgagagcccg tgtcttcggg acagccccga ccgaaggagc ggcagccccg acgtcaaggg
      361 gcctcccccg gtgaaggtgg cccggctgga gcagaacggc agccccatgg gagcccgcgg
      421 gaggcccaac ggcgccgtgg ccaaggccgt gggaggtaac agcccggagc tgggaggtct
      481 gatgattccg gtcttctgtg tggtggagca gttggatggc tctcttgagt acgacaacag
      541 agaagagcat gctgagttcg tcttggtgcg aaaagatgtg ctttttagcc agctggtgga
      601 gacggcgctc ctggccctgg gctattccca cagctctgca gctcaggccc aaggaataat
      661 caagctgggg aggtggaacc ctctccctct cagttatgtg acagacgccc ctgatgccac
      721 cgtggccgac atgctgcaag atgtctatca cgttgtgacg ctgaagatcc aattacaaag
      781 ttgttcaaag ttggaagact tgcctgcaga gcaatggaac cacgccaccg tccgcaatgc
      841 cttaaaggag ctgctcaaag aaatgaacca gagcacatta gccaaagaat gccctctctc
      901 ccagagtatg atttcatcca ttgtaaatag cacatactat gccaatgtgt cagcaaccaa
      961 gtgccaggag tttgggagat ggtacaaaaa gtataagaag ataaaagtgg aaagagtgga
     1021 gcgagagaac ctttcagact attgtgttct gggccagcgg ccaatgcatt taccaaatat
     1081 gaaccagctg gcatccctgg gaaaaaccaa cgaacagtct cctcatagcc aaatccacca
     1141 cagtactcca atccggaacc aagtgcccgc actgcagccc atcatgagcc ctggtcttct
     1201 ctcaccgcag ctcagcccac agctggtcag gcagcaaata gctatggctc atctgataaa
     1261 ccagcagatc gccgttagcc gacttctggc tcaccagcat cctcaagcca tcaaccagca
     1321 gttcctgaac catccaccca ttcccagagc agttaagcca gagccaacaa actcctctgt
     1381 ggaagtctct cctgatatct accagcaagt tagagatgag ctgaagaggg ctagcgtgtc
     1441 tcaagctgtc ttcgcaagag tggcattcaa ccgcacacag ggattattgt cagagatact
     1501 gcgtaaggaa gaagacccca ggactgcatc tcagtctctt ctagtaaacc tgagggccat
     1561 gcagaacttc ctcaacctgc ctgaagtgga gcgtgaccgc atttaccagg atgagcgaga
     1621 gcggagcatg aaccccaatg tgagcatggt gtcctctgcc tctagcagtc ccagctcctc
     1681 ccgaacccca caggccaaaa cctcgacacc gacaacagac ctccctatta aggtggacgg
     1741 agccaacgtc aacatcacag ctgccattta tgacgagatc caacaggaga tgaaaagagc
     1801 caaggtgtct caagccctgt ttgccaaagt ggctgcaaac aaaagtcagg gctggctctg
     1861 tgaactgctt cgttggaagg agaaccccag tccagaaaac cgcacccttt gggagaatct
     1921 ctgcaccatt cgccgtttcc tgaatcttcc ccagcatgag agggatgtga tctatgagga
     1981 agaatctcga catcaccaca gtgagcgcat gcaacacgtg gtccagctcc cacctgagcc
     2041 cgtgcaggtc cttcatcgac agcagtccca gccaactaag gagagctccc ctcccagaga
     2101 agaagcaccc ccaccacctc ctccaacaga agacagttgt gccaaaaaac ctcggtctcg
     2161 cacaaagatc tccttggaag cactgggcat ccttcaaagc ttcatccatg atgtaggcct
     2221 ctatcctgac caagaagcca tccacacact ctcagcccag ttggatctcc ctaaacacac
     2281 catcatcaag ttcttccaga accagaggta ccatgtgaag catcatggga agctgaagga
     2341 gcatctgggc tccgcggtgg acgtggcgga gtataaggac gaggagctgc tgacagagtc
     2401 tgaggagaac gacagcgagg aaggctcgga cgagatgtac aaggtggagg ccgaggagga
     2461 gagcgcagag aagaacaagg tggcccctgc tgaaactgac cagagataat gtgagctcca
     2521 caggcagcgc aatacatggg tccaaggact ttccgcttta gtttctttta aagttcctct
     2581 cggctttgtt ttattttgtt ttttatttta tgtctgtttt atttttctta cccttaatgg
     2641 cattcctctg ttacacagga tagcctatag actgagtgaa ctcagagttt ctgaatcaga
     2701 cgtcgccttg gcaaagacac taagtgttaa acttttacaa ttgactggac catagtaatt
     2761 ctagtcacgg gagaccctgc catcattctt ggacctacga agagacacca gacaagttcc
     2821 aggatgggaa gacccaggaa ataaatgaag gaagctacga gtgtgtgtgt atatgtatat
     2881 gtacatatct ctatatttac atatatatat taaaaattgc atgggacaga gaactttaca
     2941 atttgaagga ctagactgtg aaatgagttc ttaaacaaaa gactcgtgta tgtataaaaa
     3001 ataataccac ttcacagtga gtcgctttga cttttggaga aactgcagcc tgctctcagg
     3061 gcggggtaac tatttttgaa ttcctattta ttttgtgtgt ttgtccctga tttttttttt
     3121 taattctatg gcttcctatc tggcagctta atgggtaatt tttgaggtat gtatttaaca
     3181 aaataacact gccaaaaaaa aaaaaaaaga gagaaaagag gaaagaagag agtaaagtga
     3241 gagacaacca gggcctgtta aaaaacgacg taaggcaaat gactcctaag gacataatgc
     3301 acactttaag acaatgacgc aacgccgtga ccttccgcac tccgttactg agtatgtcag
     3361 cactgtagcg agcaggtgta ttctgtggtg gaatcccgag ccaagttcag tgcaggggaa
     3421 acttgacctt tagcgcagtc tcgatgaatg acattctgat attggatgac ctatgggatc
     3481 catgctatga gccacatttt gtcgtgaagt ttatttacct gcttgtggct tcaaatctta
     3541 aaattattaa gcctgctcat ttaaaattgt tgggatgtta ctgtttcctt tcgtttcatt
     3601 tttgttttct ggatttcttt tgtttttgtt ttcattttgt tttgttttaa atagagcata
     3661 gttcaaggta atgctaggtt agagaaagaa gtttctgccc ggtttgaggg gcttccactc
     3721 aaatgaatct ccacccgccc cgctccccaa gcgtttctta ctcctcttcc gtttggactt
     3781 cttttcttca caaaccccct tcgcttagcc aaacctctgc agaccctgag ctcacgtgcc
     3841 tctgcccttc ccctgccatg gcagccctga caggaacctg gtttggaatc attatgcacc
     3901 tccaggcaat aaataaagta agggaagcaa tttcagcaga gtcacctact catcggaaaa
     3961 ggaaataatt gtcccagtgc cccacattgc gcttacctta cgtaaagcag aactaatgcc
     4021 aacgggctgt tttgtgaaac aagcgttaag ctgcagtcta ccacactttg ccaagtctcc
     4081 tccagtttcc tattagaaac agtagcattc ccttccagtt ccactgacag agatagcaag
     4141 gggccaggcc cccagaaccc actccaggct tgagacggcc actcaacagt cccgcacggt
     4201 tggattttgt tttgttttgt cttgtttttg agttgtatcc tcatgcaacc ttgtcaaaga
     4261 cctcatgcaa tatcactttg aaatttattt tctgtttact acacaaacat tgtaatataa
     4321 ctgttaatac tatttatata tttgaaaggt ataagaggta ggagtttaaa aaaaacaaac
     4381 ctctatgtgt agatattaac tcagaaatta cactatacag ggagaagaca cgttgcaata
     4441 caagctaatt ctagctgctt agtaacctct ggagttttca aagggacgtt ttcctgtact
     4501 ttttcaaata atgatgttta aaacagttaa ccttgacgtg agtgtcacgc gtctttgcaa
     4561 aaggatggct gtttgcaatc gaggcctggg cctgcccttc ccctttctgt agatgctgca
     4621 gctttaatcc gagagttcac agttgctgct tcctgatctc cgagttactc tttccaaatt
     4681 gtcttctgac actgttgctg aagtcactct gtacacaccc tccacaccga tttttttgcc
     4741 aagctcttac aggtggttca tcgatcgatg gcatccgcat ttggtatctt ttacacttca
     4801 accaaaaatt tattaggtat ttttcaatgc taagtcttgc cttttgtttt ttaatttcac
     4861 tgccgagttt gcagtgattc taagtgaatc tgtgggcatt ttagcctgtg gtcttgccag
     4921 atctttgcga attacaatgc atatatgtct atttattcaa tatctgtcat ataatatcta
     4981 tttggaagaa gaaactttct cttgtagtgc ctcttgacaa agcacaattt cccgcctttt
     5041 tttttttttt gtgaaatgaa gaaaaaaaaa acaaattgtg ttttattgca gtatcaataa
     5101 tgtgaataag gattaacata ttgtaaatgt tcttttttcc atgtaaatca actatctttg
     5161 ttatcactaa gtgataattt ttaacttatg tgcattgtta ggctgttaga attttttggt
     5221 tgttaaataa aacgcattca ataaatctga
//
