LOCUS       XM_006249502            3732 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus spliceosome associated factor 3, U4/U6
            recycling protein (Sart3), transcript variant X2, mRNA.
ACCESSION   XM_006249502
VERSION     XM_006249502.4
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086030) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006249502.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3732
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..3732
                     /gene="Sart3"
                     /note="spliceosome associated factor 3, U4/U6 recycling
                     protein; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 ESTs, 105 long SRA reads, 1
                     Protein"
                     /db_xref="GeneID:304582"
                     /db_xref="RGD:1311646"
     CDS             480..3023
                     /gene="Sart3"
                     /codon_start=1
                     /product="squamous cell carcinoma antigen recognized by
                     T-cells 3 isoform X2"
                     /protein_id="XP_006249564.1"
                     /db_xref="GeneID:304582"
                     /db_xref="RGD:1311646"
                     /translation="MARQKMSEIFPLTEELWLEWLHDEISMAVDGLDRERVYELFERA
                     VKDYICPNIWLEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLHMTKGLAIWEAYREF
                     ESAIVEAARPIAAFLSPSDREQTFDSQLERVHSLFRRQLAIPLYEMEATFAEYEEWSE
                     EPIPESVLQSYQKALGQLEKYKPYEEALLQAEAPRLAEYQAYIDFEMKVGDPARIQLI
                     FERALVENCLVPDLWIRYSQYLDRQLKVKDLVLSVHSRAVRNCPWTVALWSRYLLAME
                     RHGLDHQMISATFENALSAGFIQATDYVEIWQVYLDYLRRRVDFRQDSSKELEELRSM
                     FTRALEYLQQEVEERFSESGDPSCLIMQSWARVEARLCNNMQKARELWDSIMTRGNAK
                     YANMWLEYYNLERAHGDTQHCRKALHRAVQCTSDYPEHVCEVLLTMERTEGTLEDWDL
                     AIQKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQRKKVRAEKKALKKKKTRGADKR
                     KAGEDDDERECGEEEEEQPSKRRRMENSLASGVASAKEEETKLSGKCLTIDVAPPSKQ
                     KEKAASLKRDMPKVAHDSSKDSVTVFVSNLPYSIEEPEVKLRPLFEACGEVVQIRPIF
                     SNRGDFRGYCYVEFKEEKSAQQALDLDRKNVEGRPMFVSPCVDKSKNPDFKMFRYSTT
                     LEKHKLFISGLPFSCTKEELEGICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQAS
                     QAVLKMDGMTIKENVIKVAISNPPQRKVPEKPEVRTAPGAPMVPRQMYGARGKGRTQL
                     SLLPRALQRQGAAPQAENGPAPGLAATTSVATEAPKMSNADFAKLLLRK"
     polyA_site      3732
                     /gene="Sart3"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 aggtgtgagc gagagcgatg gggatgagga ggacgccgcc atggcttcct ccgccgagag
       61 ctccgccggg gaggacgagt gggagtacga cgaggaggag gagaagaacc agttggagat
      121 cgagcggctg gaggagcagt gcctcctgtt gggcaaaccc agctgtaaac cattgtgcca
      181 gaagaccaaa atctagtgca ccccagttgt tcatgggaca aggagaagat atggaggagt
      241 gggaccaaaa agatgaagcc tgttctcgtg aggaaacgag gctcagcaaa tggtaggatc
      301 tgactcggct gaattcacac aagtgggcct tgatctctta tggtcatctg tggtccagat
      361 acccccctgg aggtgcggtc cctcagtgat ttgtgctgtc catcaatggc tatgattaca
      421 actgccacgt gggactcatc aggctgttgc ggctggaagg cgagctcaac aaagtgagga
      481 tggcccgaca gaagatgagc gagatcttcc ccttgactga agagctctgg ctggagtggc
      541 tccacgatga gatcagcatg gctgtggacg gcctggaccg cgagcgtgtc tacgagctct
      601 ttgagagagc cgtgaaggac tacatctgtc cgaacatttg gctagaatat ggccagtact
      661 cagttggtgg cattggtcag aaaggtggcc tagagaaagt tcgctctgtg tttgaacgag
      721 ccctgtcatc tgttggccta cacatgacaa aaggtctggc catctgggag gcctaccggg
      781 agtttgaaag tgccattgtg gaagctgctc ggcccatagc tgccttcctt tccccttctg
      841 accgggaaca aacctttgat tcacagctgg agagagtgca cagcctcttc cggcggcagc
      901 tggcgatccc actgtacgag atggaggcca cctttgcaga gtatgaagaa tggtcagaag
      961 agcccatacc tgagtccgta cttcagagct atcagaaggc actggggcag ctggagaagt
     1021 acaagcctta cgaggaagca ctgttgcaag cagaggctcc acggctggcg gagtaccaag
     1081 cttacatcga ctttgagatg aaagttgggg atcctgctcg cattcagttg atctttgagc
     1141 gtgccctggt ggagaactgc ctggtgccag acttatggat ccgctacagt cagtacctag
     1201 atcgacagct gaaagtaaag gatttggttt tatctgtaca cagccgagct gtgaggaact
     1261 gcccatggac agttgccctg tggagtcggt acctcctggc catggagcga cacggactgg
     1321 accatcaaat gatttccgcg accttcgaga atgctctgag tgccggattc atccaggcca
     1381 ctgattatgt ggagatctgg caggtgtacc tagactacct gaggagaagg gttgacttca
     1441 gacaagactc tagcaaagag ctggaagagc tgcggtccat gttcacgcgt gctctggagt
     1501 atctgcagca ggaggttgag gagcgtttca gcgagagcgg agatccaagc tgcctgatca
     1561 tgcagagctg ggcccgggtt gaggctcgcc tgtgcaataa catgcagaaa gctcgagaac
     1621 tctgggacag catcatgacc agagggaatg ccaagtacgc caacatgtgg ctggagtact
     1681 acaacctgga aagggcacac ggtgacacac agcactgtcg gaaggctctg caccgagctg
     1741 tgcagtgcac gagcgactac cctgagcatg tctgtgaagt gctgctcacc atggagagga
     1801 cagaagggac cttggaagat tgggacctag ccattcagaa gacagagacg cgcttggctc
     1861 gtgtgaacga gcaaaggatg aaggctgcag agaaggaagc agctcttgtg cagcaggaag
     1921 aagaaaaggc tgagcagcgg aagaaggtgc gggcggagaa gaaagccctg aaaaagaaga
     1981 agacgcgagg tgcagacaag cgcaaggcag gcgaggacga tgatgagaga gagtgcggtg
     2041 aagaggagga agaacagcct tccaaacgca gaaggatgga gaacagcttg gcctctggag
     2101 tggcttcagc taaggaggaa gaaacaaaac tttccgggaa atgcttaaca atagacgttg
     2161 ctcctccttc caagcagaaa gagaaggccg cctcccttaa gcgggacatg cccaaggtgg
     2221 ctcacgacag cagcaaggac agtgtcactg tctttgtcag caacctgccc tacagcatag
     2281 aagaaccaga ggtgaagctc aggccgctct ttgaggcctg tggggaagtg gtccagatca
     2341 ggccaatctt cagcaaccgt ggggacttcc ggggctactg ctatgtggag tttaaagagg
     2401 agaagtcagc ccagcaggcc ctggatctag acaggaagaa tgtggaagga aggccgatgt
     2461 ttgtgtcccc ctgtgtggat aagagcaaga accccgattt taagatgttc agatacagca
     2521 ccaccctgga gaaacacaaa ctcttcatct cgggcctgcc cttttcctgc accaaagagg
     2581 aacttgaagg catttgtaag gctcatggca ctgttaagga cctcaggctg gttactaaca
     2641 gggccggcaa gccaaagggc ttggcgtacg tggagtatga gaatgagtcc caggcctctc
     2701 aggcagtgct gaagatggat ggcatgacca tcaaagagaa cgtcatcaaa gtggcgatca
     2761 gcaacccccc tcagcggaaa gttccagaga agccagaagt gaggacagcc ccaggagccc
     2821 ccatggttcc ccggcagatg tatggagcgc gcgggaaggg acggacccag ctctcgcttc
     2881 ttcctcgggc tctgcagcgc cagggtgctg ctcctcaggc tgagaacggc ccagctccgg
     2941 ggctggcagc caccacctct gtggccactg aggctcctaa gatgtccaat gccgattttg
     3001 cgaagttact cctgagaaag tgagcaggac tctgagatgg aatgccttac ctgctccttc
     3061 atgctggcca ggctggctgc tgtgggccct gggcacagaa gggctgggca ctcaaacctg
     3121 cgtgcccacc gatttctcct ccggtgtaga tgggaaggga gagcctatgt tgagcatggc
     3181 ggtgaggagt gttccctcac attgagggcg gaggccgact gctctacggg ctgtcccacg
     3241 gtacgttagt gtcctaacaa ggagggactc agctttcgag gcctacttgt cctgatactt
     3301 tcaccgcctc tggccctttt tctacgaacc ccctccccgg ccctgcacag cacgcgtgcc
     3361 catcactctt tagtgtgaaa ggtggagtgg aggagccgca ctcatcagag tggcctgttc
     3421 agtgaagtgc ccgagggaca tcacagaagg ctcgcttgat gggttttgtc caaagagcct
     3481 atgagttttt ctattatgta tttgtaattg acattttgac tgttttatgt tccctaaacg
     3541 tggggagtct gcaacacttg ttcctaggaa ttgtgtgtgc cacccgctgt gtgtgccacc
     3601 cactgtggcc cattttcttt gcctgatgac tgaagaccta cgccctctgc tcaaacactc
     3661 atgcctggtg ccgtgtccag tgcagagtga gttcccattt agttctgttt attaaactga
     3721 agttcttaca ga
//
