LOCUS       NM_001033070            1244 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus SAP domain containing ribonucleoprotein (Sarnp),
            mRNA.
ACCESSION   NM_001033070 XM_343147
VERSION     NM_001033070.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1244)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 1244)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 1244)
  AUTHORS   Katahira,J.
  TITLE     mRNA export and the TREX complex
  JOURNAL   Biochim Biophys Acta 1819 (6), 507-513 (2012)
   PUBMED   22178508
  REMARK    Review article
REFERENCE   4  (bases 1 to 1244)
  AUTHORS   Dufu,K., Livingstone,M.J., Seebacher,J., Gygi,S.P., Wilson,S.A. and
            Reed,R.
  TITLE     ATP is required for interactions between UAP56 and two conserved
            mRNA export proteins, Aly and CIP29, to assemble the TREX complex
  JOURNAL   Genes Dev 24 (18), 2043-2053 (2010)
   PUBMED   20844015
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC100070.1.
            
            On Sep 9, 2005 this sequence version replaced XM_343147.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC100070.1, FN798747.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1244
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q11"
     gene            1..1244
                     /gene="Sarnp"
                     /gene_synonym="Cip29; RGD1305692"
                     /note="SAP domain containing ribonucleoprotein"
                     /db_xref="GeneID:362819"
                     /db_xref="RGD:1305692"
     exon            1..194
                     /gene="Sarnp"
                     /gene_synonym="Cip29; RGD1305692"
                     /inference="alignment:Splign:2.1.0"
     CDS             159..791
                     /gene="Sarnp"
                     /gene_synonym="Cip29; RGD1305692"
                     /note="nuclear protein Hcc-1; cytokine induced protein 29
                     kDa"
                     /codon_start=1
                     /product="SAP domain-containing ribonucleoprotein"
                     /protein_id="NP_001028242.1"
                     /db_xref="GeneID:362819"
                     /db_xref="RGD:1305692"
                     /translation="MATETVELHKLKLAELKQECLARGLETKGIKQDLINRLQAYLEE
                     HAEEEANEEDVLGDETEEEEPKPIELPVKEEEPPEKVVDMASEKKVVKITSGIPQTER
                     MQKRAERFNVPVSLESKKAARAARFGISSVPTKGLSSDTKPMVNLDKLKERAQRFGLN
                     VSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRKRAERFGIA"
     exon            195..294
                     /gene="Sarnp"
                     /gene_synonym="Cip29; RGD1305692"
                     /inference="alignment:Splign:2.1.0"
     exon            295..341
                     /gene="Sarnp"
                     /gene_synonym="Cip29; RGD1305692"
                     /inference="alignment:Splign:2.1.0"
     exon            342..409
                     /gene="Sarnp"
                     /gene_synonym="Cip29; RGD1305692"
                     /inference="alignment:Splign:2.1.0"
     exon            410..461
                     /gene="Sarnp"
                     /gene_synonym="Cip29; RGD1305692"
                     /inference="alignment:Splign:2.1.0"
     exon            462..535
                     /gene="Sarnp"
                     /gene_synonym="Cip29; RGD1305692"
                     /inference="alignment:Splign:2.1.0"
     exon            536..564
                     /gene="Sarnp"
                     /gene_synonym="Cip29; RGD1305692"
                     /inference="alignment:Splign:2.1.0"
     exon            565..590
                     /gene="Sarnp"
                     /gene_synonym="Cip29; RGD1305692"
                     /inference="alignment:Splign:2.1.0"
     exon            591..659
                     /gene="Sarnp"
                     /gene_synonym="Cip29; RGD1305692"
                     /inference="alignment:Splign:2.1.0"
     exon            660..749
                     /gene="Sarnp"
                     /gene_synonym="Cip29; RGD1305692"
                     /inference="alignment:Splign:2.1.0"
     exon            750..1122
                     /gene="Sarnp"
                     /gene_synonym="Cip29; RGD1305692"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaaagtggc caagaggcgt gagagcgacg ccgccactga ctaatgggaa gagccgttgg
       61 tgtgaggtgg gagcaaaaat gacagcgatt ggttggatga gcctaagctc ctgaagaggg
      121 ggcagctgtg ggggtctggt ggagtaaggc gcagcaagat ggcgaccgag acggtggagc
      181 tccacaagct gaagcttgct gaactaaagc aagaatgcct tgctcgtggt ttagagacca
      241 agggaataaa acaagatctt atcaataggc tccaggcata tcttgaagaa catgctgaag
      301 aagaagcaaa tgaagaagat gtactgggag atgaaactga ggaagaagaa ccaaagccta
      361 tagaactgcc tgttaaagag gaagaacctc ctgaaaaagt tgttgatatg gcatcagaaa
      421 agaaggtggt aaaaattaca tctggaatac ctcaaactga gagaatgcag aagagggctg
      481 aacgtttcaa tgtgcctgta agcttggaga gtaagaaggc tgctcgggca gcgaggtttg
      541 gaatttcttc agttccaaca aaaggtttat catctgacac caagccaatg gttaacctgg
      601 ataaactaaa ggaaagagca cagagatttg gtttgaatgt ctcttccatc tctagaaagt
      661 ctgaggatga tgagaagctg aagaaacgga aggagagatt tggaattgtg acaagttcag
      721 ctggaactgg aaccacagag gatacagagg caaagaaaag aaaaagagca gagcgttttg
      781 ggattgcata atgaaaagtt cgtgctttct gcccacccca tagtggtttc catttctcag
      841 attttcttgg ttttatatat acagacacac acacacacac cacacacacc acacacacca
      901 cacacacaca cgcacacgca cacgcacaca cacacacaca cacacttccc tacctatctg
      961 cctacataca cagtcatgtg cctcacagtg aggaagcatg tacgtttggt acatccttga
     1021 attcggtagc agttttattt aactgctctt ctgcatttaa gattgttgtg gtttttgttt
     1081 ttaattattt ttgcttatta ataaaagagg aagaaaagaa aaaaaaaaaa aaaaaaaaaa
     1141 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1201 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//
