LOCUS       NM_001398798            1145 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus SAP30-like (Sap30l), mRNA.
ACCESSION   NM_001398798 XM_340803
VERSION     NM_001398798.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1145)
  AUTHORS   Laitaoja,M., Tossavainen,H., Pihlajamaa,T., Valjakka,J., Viiri,K.,
            Lohi,O., Permi,P. and Janis,J.
  TITLE     Redox-dependent disulfide bond formation in SAP30L corepressor
            protein: Implications for structure and function
  JOURNAL   Protein Sci 25 (3), 572-586 (2016)
   PUBMED   26609676
REFERENCE   2  (bases 1 to 1145)
  AUTHORS   Viiri,K.M., Janis,J., Siggers,T., Heinonen,T.Y., Valjakka,J.,
            Bulyk,M.L., Maki,M. and Lohi,O.
  TITLE     DNA-binding and -bending activities of SAP30L and SAP30 are
            mediated by a zinc-dependent module and monophosphoinositides
  JOURNAL   Mol Cell Biol 29 (2), 342-356 (2009)
   PUBMED   19015240
REFERENCE   3  (bases 1 to 1145)
  AUTHORS   Korkeamaki,H., Viiri,K., Kukkonen,M.K., Maki,M. and Lohi,O.
  TITLE     Alternative mRNA splicing of SAP30L regulates its transcriptional
            repression activity
  JOURNAL   FEBS Lett 582 (2), 379-384 (2008)
   PUBMED   18070604
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Dec 23, 2021 this sequence version replaced XM_340803.8.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CB581194.1, SRR22582424.1553184.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-652               JAXUCZ010000010.1  42480201-42480852
            653-775             JAXUCZ010000010.1  42484308-42484430
            776-874             JAXUCZ010000010.1  42486241-42486339
            875-1145            JAXUCZ010000010.1  42487869-42488139
FEATURES             Location/Qualifiers
     source          1..1145
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q22"
     gene            1..1145
                     /gene="Sap30l"
                     /gene_synonym="RGD1309585"
                     /note="SAP30-like"
                     /db_xref="GeneID:360531"
                     /db_xref="RGD:1309585"
     exon            1..652
                     /gene="Sap30l"
                     /gene_synonym="RGD1309585"
                     /inference="alignment:Splign:2.1.0"
     CDS             455..1003
                     /gene="Sap30l"
                     /gene_synonym="RGD1309585"
                     /codon_start=1
                     /product="histone deacetylase complex subunit SAP30L"
                     /protein_id="NP_001385727.1"
                     /db_xref="GeneID:360531"
                     /db_xref="RGD:1309585"
                     /translation="MNGFSTEEDSREGPPAAPAAAPGYGQSCCLIADGERCVRPAGNA
                     SFSKRVQKSISQKKLKLDIDKSVRHLYICDFHKNFIQSVRNKRKRKTSDDGGDSPEHD
                     ADIPEVDLFQLQVNTLRRYKRHYKLQTRPGFNKAQLAETVSRHFRNIPVNEKETLAYF
                     IYMVKSNRSRLDQKPEGSKQLE"
     exon            653..775
                     /gene="Sap30l"
                     /gene_synonym="RGD1309585"
                     /inference="alignment:Splign:2.1.0"
     exon            776..874
                     /gene="Sap30l"
                     /gene_synonym="RGD1309585"
                     /inference="alignment:Splign:2.1.0"
     exon            875..1145
                     /gene="Sap30l"
                     /gene_synonym="RGD1309585"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgggcggc ggccggggcg gcccaggggc tgccgcgggg actcggggcg ccgccgagcg
       61 gccaggcgct ggggcgggcc gagcgcaccg cggggcccgg acacggcggg ttcgaggccg
      121 ggcccccgcg cggggagctg cggggtggag actttgccgc gcggcgcgga gcaggcggga
      181 gccggcgggg gcctcgggag ccccagggcg gccgggcccg gatcccgggg gagcctcgcg
      241 agtccgggcc ggaacctcgg tgtgcgcatc ccctccgggg cccgggctgc aggagcacag
      301 agcaaccggg cctcgcggag ctcagagcgc gcctgacccg gggcgcaccg tgggacccgg
      361 gcgcggggct ggcggagagc tgccccgcgg ggctagcagc cgcggagtgg cctacagggg
      421 ccctcccccg gaggggccgg gtcggggcgg ggagatgaac ggcttcagca cggaggagga
      481 cagccgcgaa gggccccctg ccgcccccgc cgccgccccg ggctacggcc agagctgctg
      541 cctcatcgcg gacggcgagc gctgcgtccg gcccgcgggc aacgcctcct tcagcaagag
      601 ggtgcagaaa agcatctcgc agaagaaact caagctggac atagacaaga gcgtaaggca
      661 cctgtacatc tgcgacttcc acaaaaattt catccagagc gtccgaaata aaaggaagag
      721 gaagacaagt gatgatggcg gagattcccc tgagcatgat gccgacattc ctgaggttga
      781 tctgttccag ctacaggtga acactctccg acgctacaaa cggcactaca agctgcagac
      841 cagacccggc ttcaacaagg cccagctagc agagactgtg agccgacact tcaggaacat
      901 accagtgaat gagaaagaga cgcttgccta tttcatctac atggtgaaga gtaacaggag
      961 cagactggac cagaagccag agggcagcaa gcagcttgag tgaggtgcag ccgcccagtg
     1021 aggtggaagc cctgatgaga ggacagccat gcactgcttg atgacaggtg gcccctgcaa
     1081 cgtctcagcc aataaggact gttcgtatct actgtaaata aagtttgaat gatggacact
     1141 gtaaa
//
