LOCUS       XM_006254605            4041 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Sin3A associated protein 130 (Sap130),
            transcript variant X1, mRNA.
ACCESSION   XM_006254605
VERSION     XM_006254605.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006254605.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006254605.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4041
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4041
                     /gene="Sap130"
                     /note="Sin3A associated protein 130; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 17
                     ESTs, 1 long SRA read, 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 76 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:307527"
                     /db_xref="RGD:1311657"
     CDS             102..3317
                     /gene="Sap130"
                     /codon_start=1
                     /product="histone deacetylase complex subunit SAP130
                     isoform X1"
                     /protein_id="XP_006254667.1"
                     /db_xref="GeneID:307527"
                     /db_xref="RGD:1311657"
                     /translation="MLAGPGPRRCKAEMSSQQFPRLGTPSPGLSQAPSQIASSGSTGL
                     INQVATVNEEAGRDADVGTREHVGPSSSLPPREEKQEPVVVRPYPQVQMLPAHHAVAS
                     ATPVAVTAPPAHLTPAVTLSFSEGLMKPSPKPTMPSRPIAPAPPSTMSLPPKVPGQVT
                     VTMESSIPQASAIPVATISGQQGHPSNLHHIMTTNVQMSIIRSSAPGPPLHIGASHLP
                     RGAAAAAVMSSSKVTTVLRPTSQLPNAATAQPAVQHLIHQPIQSRPPVSTSSTIPPAV
                     VATVSATRAQSPVITTTAAHAADSALSRPTLSIQHPPSAAISIQRPAQSRDVTTRITL
                     PSHPALGTPKQQLHTMAQKTIFSTGTPVAAATVAPILATNTLPSATTAGSVSHTQAPT
                     STIVTMTMPSSHSSHATAVTTSNIPVAKVVPQQITHTSPRIQPDYPSERSSLIPISGH
                     RASPNPVAMETRNDNRPSVPVQFQYFLPTYPPSAYPLAAHTYTPITSSVSTIRQYPVS
                     AQAPNSTITAQTGVGVASTVHLNPMQLMTVDASHARHIQGIQPAPISTQGIQPAPIGT
                     SGIQPAPIGTQGIHSAAPINTQGLQPAAMGNQQPQPEGKTSAVVLADGATIVANPITS
                     PFSAAPAATTVVQTHSQSASTNTPAQGSSPRPSILRKKPATDGMAVRKTLLPPQPPDV
                     ASPRVESSMRSASGSPRPAGTKPKSEVHVSIATPVTVSLETISNQNAEQPTVAVPPTA
                     QQPPPTIPSMIAAASPPSQPAIALSTIPGAVPITPPVTTIAAAPTPSAPVGGTPPTVL
                     GPPIPEIKVKEEVEPVDITRPVSTVPPLATNTVSPSLALLASNLSMPPSDLPPGASPR
                     KKPRKQQHVISTEEGDMMETNSTDDEKSTAKSLLVKAEKRKSPPKEYIDEEGVRYVPV
                     RPRPPITLLRHYRNPWKAAYHHFQRYSDVRVKEEKKAMLQEIANQKGVSCRAQGWKVH
                     LCAAQLLQLTNLEHDVYERLTNLQEGIIPKKKAATDDDLHRINELIQGNMQRCKLVMD
                     QISEARDSMLKVLDHKDRVLKLLNKNGTVKKVSKLKRKEKV"
ORIGIN      
        1 ctgctagaac ccggaagtcc taggcacacg tgactccacc tataggcgct tcttcccaaa
       61 ttggttgcta gggagacgcg gcttaggatg gaaggggaag gatgcttgct gggcctggtc
      121 ccaggagatg caaggcggaa atgagttctc agcagtttcc tcgattagga accccttctc
      181 ctgggcttag ccaggcaccc tcacagattg caagcagtgg ttccacagga ttgataaacc
      241 aagtcgccac cgttaacgag gaggctggcc gagatgctga tgttggtacc agggagcacg
      301 tgggccctag cagctccctg ccgccccggg aagagaagca ggagccagtt gtggtaaggc
      361 cctatccaca ggtacagatg ctgcccgcac accatgctgt cgcctcagcc actcctgtcg
      421 cagtgacagc cccgccagca cacctgacac cagcagtcac actctctttt tcggaaggac
      481 ttatgaagcc atccccgaag cccaccatgc cgagccgtcc cattgctcct gctccccctt
      541 ctaccatgtc acttcccccg aaagttccag gacaggttac tgttaccatg gagagcagca
      601 tccctcaggc ttcagccatt cctgtggcaa cgatcagtgg acaacaggga catcccagta
      661 acctgcatca cattatgacc acaaacgttc agatgtccat tatccgcagc agtgctcccg
      721 gaccccctct tcacatcggc gcttcccact taccccgagg cgcagcagct gctgctgtga
      781 tgtccagctc taaagtaacc acggtcctga ggccaacttc ccagctgcca aatgctgcca
      841 cggcccagcc agcggtgcag cacctcattc accagccaat ccagtctcgt ccacctgtga
      901 gcacctccag tacgatccct cctgctgtag tagcgacagt ctcagccacc agagcgcagt
      961 ctcccgtcat cactaccaca gcagcacacg ctgctgactc agcactcagt cggcccacgt
     1021 tatctatcca gcacccacca tctgcagcca ttagtatcca gcgtcctgca cagtctcggg
     1081 atgtgacgac gagaatcaca ctgccttctc atcctgcact aggaacgcca aaacagcagc
     1141 tccatacaat ggctcagaaa accatcttta gcaccggcac accagtggct gcagctacag
     1201 tagcacctat tctggcaacc aacacgcttc cttcagcaac cacagctgga tctgtgtcgc
     1261 acacacaggc tcccacaagt acaattgtta ccatgacaat gccctcctcc cattcatccc
     1321 acgctactgc tgtgaccact tcaaatatcc cagttgctaa ggtggtgccc cagcagatca
     1381 cacacacttc ccctcggatc cagcctgatt acccttccga gaggagcagc ctgatcccca
     1441 tttccggcca tcgggcctct ccaaatcctg tggccatgga aacccgaaat gacaacagac
     1501 cttcggttcc tgttcagttc cagtacttcc tgccaaccta cccgccctct gcctacccgc
     1561 tggctgccca cacctacacc cctatcacca gttctgtgtc cactatccgg cagtacccag
     1621 tttcagctca ggccccaaac tccaccatca cagctcagac tggcgttggc gtagcatcta
     1681 cagtccacct gaaccccatg cagctgatga ctgtggacgc ttcccatgcc cgacatatcc
     1741 aggggatcca gccagcaccc attagcacac agggaatcca gccagcaccc attgggactt
     1801 cagggatcca gccagcacca atcggcaccc aaggaatcca ctcagcagcc ccaatcaaca
     1861 ctcaggggct tcagccagca gcgatgggta atcagcaacc acagcctgaa ggcaaaacct
     1921 cagcagtggt gctggcagat ggagctacaa ttgtagccaa ccccattacc agtccgttca
     1981 gcgctgctcc agcagcaacc acagtggtcc agactcacag tcagagtgct agcaccaaca
     2041 cgccagccca gggctcctct ccacggccaa gcatcctgcg gaagaagcct gccacagacg
     2101 gaatggcagt tcggaaaact ctcctccctc ctcagcctcc tgacgtggct agtcctcgag
     2161 tagaaagctc catgcggagt gcttccgggt cacctagacc tgcaggcacc aaacctaaat
     2221 ccgaagtgca cgtgtccata gccactccag tcacagtgtc cttggagacc atatccaatc
     2281 aaaatgccga acagcctacc gtcgccgtcc ctccaactgc ccagcagcct ccaccgacca
     2341 ttcccagcat gatcgcagca gccagtcctc catcccagcc agccattgct ctttctacca
     2401 ttcccggagc tgtgcccatc actccacccg tcacgaccat tgctgctgca ccaacaccgt
     2461 cagcccctgt gggcggcact cctcccacgg tcctggggcc tcccattcct gagatcaaag
     2521 tgaaggaaga agtggagcca gtggacatca ccaggccagt gtccacagtc cctcctctgg
     2581 ctaccaacac cgtgtctcca tctctggctt tgctggcaag caacctgtcc atgcctccaa
     2641 gtgacctccc acctggtgcc tccccaagga aaaagcctcg aaagcagcag cacgtgatct
     2701 caaccgagga gggggatatg atggagacaa acagcaccga tgatgagaag tccactgcca
     2761 aaagtctctt ggtgaaggct gagaaacgca agtctcctcc caaagagtac attgatgagg
     2821 aaggcgtgag gtacgtccca gtgcggccaa gacctcccat tactttgctc cgtcactatc
     2881 ggaacccctg gaaagctgct tatcaccact ttcagaggta cagtgacgtc cgggtcaaag
     2941 aggagaagaa agctatgcta caggaaatag ctaatcagaa aggagtgtcc tgccgtgccc
     3001 aaggctggaa agtccacctc tgtgctgccc agttactaca gctgacaaat ctagagcacg
     3061 acgtttatga aagactcacc aacctccagg aagggatcat cccaaagaaa aaggcagcaa
     3121 ccgacgacga cctgcatcgg ataaacgagc tgatacaggg aaacatgcag aggtgtaaac
     3181 tagtgatgga ccaaatcagt gaagccagag actctatgct taaggttttg gatcacaaag
     3241 atcgggtcct gaagctcctc aacaagaatg ggactgtaaa gaaagtgtca aaattgaagc
     3301 gaaaggagaa ggtgtagacc tgggagaatc aggacttgga aacagaattt atgaatgatg
     3361 ctgcggggga ggggggaggg ctttgctact ttgacaatgg agcattgaaa tgcaggacac
     3421 ttcccttcat tcacttgagg aagcagatct ggtgacacag aaggatcggg acgggactgc
     3481 cgtgctgagt cctcttcctc ccaggcacat cctaatacac ctcagttttc agggactcag
     3541 atactcggtg acacagatgg ccagcggagt tttcagcctc tcagtccata gactatttat
     3601 ctggtggatt cctgcggggc ctgagctgag cctggactga aagtatccac ttggacaatc
     3661 tgttctctag actaaacata aaacctcttc tcaccccgtc agttctcctg tttgaccgtc
     3721 cgatgcccaa atcggccttc tacagtggtg cggcagcacc cagagaaacc acgtctcacg
     3781 caaaaggatt ccagcaatca gttcttgtcg tttattttca aaagaaccat ctccaagtga
     3841 tactgttaca ctgtctgtcc tgcctgtgtc agagctggat tcgtgtgaag gttgcgagca
     3901 gacaacacta acctgctctg gaatcctgtt ctggagaaca ttctcagtta tctgtacttc
     3961 ctcactgtgt gatgctgtca atcatatgta ccacgcatct ccaaatgtta ataaagaact
     4021 agaagaggtt tttgtagatg a
//
