LOCUS       NM_001100971            2480 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus SANT and BTB domain regulator of CSR (Sanbr),
            transcript variant 1, mRNA.
ACCESSION   NM_001100971 XM_001057128 XM_223682
VERSION     NM_001100971.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2480)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC128776.1.
            
            On or before Aug 12, 2007 this sequence version replaced
            XM_223682.4, XM_001057128.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC128776.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2480
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14q22"
     gene            1..2480
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /note="SANT and BTB domain regulator of CSR"
                     /db_xref="GeneID:305579"
                     /db_xref="RGD:1305110"
     exon            1..27
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /inference="alignment:Splign:2.1.0"
     exon            28..157
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /inference="alignment:Splign:2.1.0"
     exon            158..316
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /inference="alignment:Splign:2.1.0"
     CDS             167..2380
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /note="isoform 1 is encoded by transcript variant 1; SANT
                     and BTB domain regulator of class switch recombination"
                     /codon_start=1
                     /product="SANT and BTB domain regulator of class switch
                     recombination isoform 1"
                     /protein_id="NP_001094441.1"
                     /db_xref="GeneID:305579"
                     /db_xref="RGD:1305110"
                     /translation="MSRGCPENNNFLTNNNQMVLDMILYPLIGIPQTINWETVARLVP
                     GLTPKECVKRFDELKSCGSSPVDNQYNPLMAAGEGPVETLATYIKSSLLDAQGDFQET
                     PVDQDTVSKAGRHSIATTRNCSSESENCTARNAGEETGDSEGPNMVIHVCDEAKSLKE
                     DFICPRDLLISEMKYFAEYLSVDAQRWEEVDISVHCDVHIFNWLIKYVKRNTKDSKDC
                     ELPALEPGNVISILISSEFLKMDSLVEQCIQYCHKNMNAIVAAPCNMNCINVNLLTRI
                     ADLFTHNEIDDLKDKKDKFRSKLFCKKIERLFDPEYFNPDSRNNAATLYRCCLCKKLL
                     TRETERRISCIPGKINVDRHGNIIYIHIRDKTWDVHEYLNSLFEELKSWRDVYWRLWG
                     TINWLTCSRCYQAFLCIEFSHCQYHSEVVVYSSAVNSLNTVGTGIYPCCNQKVLRFDP
                     TQLTKGCKVRDHMVLLHDQGENDDSLSCPTAKILDDLHKHKDVIAVPFLKDPVSDPGV
                     GSCDEKGLEYEILLEPNTPWGSKTGELNAFLSLKNWTLQLKQQSLFSEEEEYTTGSEV
                     TEDEVGDEEEISKKQRKKEKPKKFTKPPKKQLSSPCSQKKEKTLEKSTSRDVSPFVVS
                     MQKNKWDATRSLRFNQDAQREDDQRRMSEITGHLIKMRLGDLDRVKAKESKEFAGGIY
                     SRLEAQVKASVPVTARQNSSDKNQSNIPQRHLFNYVHSNFIRNSQKLETSQMFIN"
     exon            317..503
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /inference="alignment:Splign:2.1.0"
     exon            504..597
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /inference="alignment:Splign:2.1.0"
     exon            598..836
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /inference="alignment:Splign:2.1.0"
     exon            837..895
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /inference="alignment:Splign:2.1.0"
     exon            896..1056
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /inference="alignment:Splign:2.1.0"
     exon            1057..1143
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /inference="alignment:Splign:2.1.0"
     exon            1144..1254
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /inference="alignment:Splign:2.1.0"
     exon            1255..1378
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /inference="alignment:Splign:2.1.0"
     exon            1379..1531
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /inference="alignment:Splign:2.1.0"
     exon            1532..1677
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /inference="alignment:Splign:2.1.0"
     exon            1678..1777
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /inference="alignment:Splign:2.1.0"
     exon            1778..1810
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /inference="alignment:Splign:2.1.0"
     exon            1811..1910
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /inference="alignment:Splign:2.1.0"
     exon            1911..2002
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /inference="alignment:Splign:2.1.0"
     exon            2003..2031
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /inference="alignment:Splign:2.1.0"
     exon            2032..2105
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /inference="alignment:Splign:2.1.0"
     exon            2106..2194
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /inference="alignment:Splign:2.1.0"
     exon            2195..2286
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /inference="alignment:Splign:2.1.0"
     exon            2287..2455
                     /gene="Sanbr"
                     /gene_synonym="RGD1305110"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtgagggcc gccgcggccc tgtggagatg aggaaacgga gacacggatt atctgaacta
       61 gagaatatct tactggtaga accaagatat aaagttggac agtttgactc cagaatctat
      121 tcttgtaact actacactgt gctggtcctt cagtaagctc tagaagatga gtcgtgggtg
      181 tccagaaaac aataatttcc tgactaataa taaccaaatg gtattggata tgatccttta
      241 tccattgatt ggaatccctc agaccatcaa ctgggaaact gtggcaaggc ttgtgcctgg
      301 attaacaccc aaagagtgtg tgaaaagatt tgatgagctg aagagctgtg gaagttcacc
      361 tgttgacaac cagtataacc ctttaatggc tgccggagag ggtcctgttg aaactttagc
      421 cacttatatt aaatcttcac ttttggatgc acaaggagat ttccaagaga ctccagttga
      481 tcaagataca gtttctaaag caggaagaca tagtatagct accacaagga attgctcttc
      541 agaaagtgag aactgtactg ctcgtaatgc tggagaagag actggagact ctgaagggcc
      601 aaacatggtg atccatgtat gtgatgaagc aaaaagcttg aaagaagatt ttatttgccc
      661 acgagatctt ttgatatcag aaatgaagta ctttgctgag tatttatctg tggacgccca
      721 gcgctgggaa gaggtggaca tttcagttca ttgcgatgtt cacattttca actggctgat
      781 aaaatatgtt aaaagaaaca ctaaggacag taaagactgt gagcttcctg ctctagagcc
      841 aggaaatgtc atttcaatcc ttatttcttc agagttcttg aagatggatt cattagttga
      901 acaatgtatt cagtattgcc ataaaaatat gaatgccata gtagctgccc catgcaacat
      961 gaactgtatc aatgtcaacc tccttacacg catagctgac ctgttcacac acaacgagat
     1021 tgatgactta aaagacaaaa aagataagtt taggagcaaa ctgttttgta agaagattga
     1081 aagactgttt gatcctgaat acttcaatcc agattctcga aataatgcag caacactcta
     1141 tcgatgctgt ttgtgtaaga aacttttaac tagagaaaca gaaagaagaa tttcttgcat
     1201 ccctggaaaa atcaatgtgg atcgacatgg aaatattatc tacatccaca taagagataa
     1261 aacctgggat gtccatgaat atttgaatag tctttttgaa gaattaaaat cttggagaga
     1321 tgtttattgg cgtctgtggg gaacaatcaa ctggctgact tgttcaaggt gttaccaggc
     1381 tttcctctgc attgaattct cccactgtca gtaccactca gaggtggtcg tttactccag
     1441 cgcagtgaac tcactgaaca ctgtgggcac tggaatttac ccctgctgta accagaaagt
     1501 tcttcgattt gatcccactc agctcacaaa gggctgtaaa gtgagggacc acatggttct
     1561 tcttcatgac caaggggaaa atgatgattc actttcttgt ccaactgcta aaatactgga
     1621 tgatctgcat aagcacaaag atgtcattgc tgtaccgttt ttaaaagatc cagttagtga
     1681 tcctggggtt ggctcctgtg atgagaaggg cctggaatat gagattttac tggagccaaa
     1741 tacaccgtgg ggctccaaaa ctggggagct caatgctttt ttgtcactga aaaactggac
     1801 tctgcagttg aaacagcagt cgttgttctc agaggaggaa gagtacacca ccgggtctga
     1861 ggtcactgaa gatgaagtcg gtgatgaaga agaaatttcc aagaaacaaa ggaaaaagga
     1921 gaagccaaag aaatttacta agccaccaaa aaagcaactg tcctcaccct gttctcaaaa
     1981 gaaagagaag acactggaga agtcaacttc tagagatgta tctccttttg ttgtgagcat
     2041 gcagaagaac aagtgggacg ccacaagatc cttgagattc aaccaggatg cacagagaga
     2101 ggacgatcag cggcggatgt ctgaaattac agggcatcta ataaaaatga gactgggtga
     2161 tctggaccga gtcaaggcaa aggaatcaaa agaatttgca ggaggcattt attctaggct
     2221 tgaagcccaa gtcaaagcct cagtgcctgt cactgcccgg caaaacagct cagacaaaaa
     2281 ccagagcaat atcccacaaa gacacttatt caactatgtt catagcaact ttattcgtaa
     2341 tagccagaaa ctggaaacaa gtcagatgtt catcaactga agaatggata aagaaaatgt
     2401 ggtacatcta cacaatggac tactagtcag ccattaaaaa cagagactgc atgaaaaaaa
     2461 aaaaaaaaaa aaaaaaaaaa
//
