LOCUS       NM_001408892             937 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus spermatogenesis associated multipass
            transmembrane protein 4 (Samt4), mRNA.
ACCESSION   NM_001408892 XM_008773143
VERSION     NM_001408892.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 937)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On Jun 30, 2022 this sequence version replaced XM_008773143.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.1859851.1,
                                           SRR26360181.990456.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-54                JAXUCZ010000021.1  26175983-26176036   c
            55-165              JAXUCZ010000021.1  26175429-26175539   c
            166-937             JAXUCZ010000021.1  26173295-26174066   c
FEATURES             Location/Qualifiers
     source          1..937
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq13"
     gene            1..937
                     /gene="Samt4"
                     /note="spermatogenesis associated multipass transmembrane
                     protein 4"
                     /db_xref="GeneID:685774"
                     /db_xref="RGD:1590194"
     exon            1..54
                     /gene="Samt4"
                     /inference="alignment:Splign:2.1.0"
     exon            55..165
                     /gene="Samt4"
                     /inference="alignment:Splign:2.1.0"
     CDS             137..838
                     /gene="Samt4"
                     /codon_start=1
                     /product="spermatogenesis associated multipass
                     transmembrane protein 4"
                     /protein_id="NP_001395821.1"
                     /db_xref="GeneID:685774"
                     /db_xref="RGD:1590194"
                     /translation="MDLFTPDTQRFSKEKECIFKLSGLFSSLSALVFEIVIISNQYWR
                     LWEFENNVVQFVSFGLWEAYYPQEFNISGTLINILVHTPIDSTWTISHEFQCAQNLIE
                     WAIFMKPVVLVFSAIAFKISCMKDPFLEIQIYCYKISALILGVSSLFTFVAVSWNHMV
                     DLYGQTTLDFPPNFPVKKEALKSKHMTAVFPIGVLTATMALFGVIIFLSEISYLKLQS
                     KLKAKCVSKVALQEA"
     exon            166..937
                     /gene="Samt4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aacacatttg gtggtcacga atatttggtc ttcatacata caacacacaa agaggtgatt
       61 cacttcttgt gtgacccaat ctctggtcaa catttcctgt tatttggaag atatctatga
      121 tatcagcttc tttcaaatgg atctcttcac ccctgataca caaagatttt ccaaagaaaa
      181 ggaatgcatc ttcaagttga gtggcctttt tagcagccta tcagctttgg tgtttgaaat
      241 agtcattatc agcaaccaat actggcgtct atgggaattt gaaaacaatg ttgtgcagtt
      301 tgtgtccttt ggactttggg aagcttatta ccctcaagaa tttaacatct caggaactct
      361 aattaatatc ctggttcata cacctattga ttcaacgtgg accatttcac atgaatttca
      421 gtgtgcacag aaccttatag aatgggctat ttttatgaag cctgtagttc tggttttcag
      481 tgcaatagct ttcaagataa gctgcatgaa agacccattt ctagagatcc agatatattg
      541 ctacaagatc tctgccttaa ttttgggagt tagcagcctc ttcacatttg ttgctgtcag
      601 ctggaaccat atggtagatc tttatggtca aaccactctt gattttccac ctaacttccc
      661 tgtcaagaaa gaagccttga aaagcaaaca tatgacagct gtgttcccta taggggtcct
      721 gactgcaacc atggcacttt ttggtgtgat aatatttctc tctgagataa gctatttgaa
      781 actacagagt aaattgaagg ccaaatgtgt ttctaaagtg gcccttcaag aggcctgaag
      841 tgagggcacc tgcatttcca acatctgtca gacagctcct ggaagaaatt tccaattgac
      901 acacaaaact catgtagtca ttaacttgtt ctaataa
//
