LOCUS       NM_001408874            1023 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus spermatogenesis associated multipass
            transmembrane protein 3 (Samt3), mRNA.
ACCESSION   NM_001408874 XM_001060573
VERSION     NM_001408874.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1023)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On Jun 30, 2022 this sequence version replaced XM_001060573.6.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.32591.1,
                                           SRR26360181.2299311.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-144               JAXUCZ010000021.1  54522644-54522787
            145-260             JAXUCZ010000021.1  54523125-54523240
            261-1023            JAXUCZ010000021.1  54524716-54525478
FEATURES             Location/Qualifiers
     source          1..1023
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq21"
     gene            1..1023
                     /gene="Samt3"
                     /note="spermatogenesis associated multipass transmembrane
                     protein 3"
                     /db_xref="GeneID:681167"
                     /db_xref="RGD:1583524"
     exon            1..144
                     /gene="Samt3"
                     /inference="alignment:Splign:2.1.0"
     exon            145..260
                     /gene="Samt3"
                     /inference="alignment:Splign:2.1.0"
     CDS             232..933
                     /gene="Samt3"
                     /codon_start=1
                     /product="spermatogenesis associated multipass
                     transmembrane protein 3"
                     /protein_id="NP_001395803.1"
                     /db_xref="GeneID:681167"
                     /db_xref="RGD:1583524"
                     /translation="MDFLTCNIQRFAVAKECIFKLSGLVCSLIALVFEIILASSRCWR
                     LWEFDSKSVQFVFFGLWEAYYPQSFNISGSMIRILVHSPINSTWTISPEFHYAQTLII
                     WAVLLKPAVLIFSAMAIKIGCMKDSFVKTQIFLYKTSALILCISSLCTFVSVSWNHIV
                     DLYGQTTLDFPPSFPVKKDALIKKHYTAAFPIGVLTATMSLFGVIMFLFEMSSLKPQS
                     EVEVQCVSRPINQKA"
     exon            261..1023
                     /gene="Samt3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cttaacactt gacagccact aacagttgag cttcttacag gagtcaaaga gacaagtgtt
       61 ttatattttt ccatgtagtt tcattaatca tgttcacttt catagggcat agaagaccag
      121 acaaagcctt tggtatataa ttaggtggtg cttcctgtct tctcacgact ccctctattg
      181 tcaacatttc ctgtaactag gaagatcact tataatcttt tggatttcca aatggatttc
      241 ctcacctgca atatacaaag gtttgctgtg gcaaaggaat gtatcttcaa actgagtgga
      301 ctcgtttgca gcctaatagc tttggtgttt gaaataatcc tagcaagcag ccgatgctgg
      361 cgcctgtggg aatttgacag taagagcgtg cagttcgtgt tttttggact ctgggaagct
      421 tattaccctc aatcgtttaa catctctggg tctatgatcc ggattctggt gcacagccct
      481 atcaactcaa catggaccat ctcaccggaa ttccactatg cacagacact gataatatgg
      541 gccgttttgt tgaaacctgc agtcctaatt ttcagtgcaa tggctattaa gatcggctgc
      601 atgaaagact catttgttaa gacacagata tttttgtaca agacctctgc cttgattttg
      661 tgtattagca gcctttgcac atttgtttct gtgagctgga accatattgt agatctttat
      721 ggtcaaacca cacttgattt tccacccagc tttcctgtta agaaagatgc tcttataaag
      781 aaacactata ctgctgcatt cccaataggt gtcctaacag ctaccatgtc actcttcggt
      841 gtgattatgt tcctttttga gatgagctct ttgaaaccac agagtgaagt ggaggtccag
      901 tgtgtttcta gaccaatcaa tcaaaaggca tgaggcaagc cagaagactg cttaaagaat
      961 ttgtccgtat gcacatatta ctaatgcagt catcaatatg ttccaaataa aacatcaact
     1021 tga
//
