LOCUS       NM_001004241            1638 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Rattus norvegicus SAMM50 sorting and assembly machinery component
            (Samm50), mRNA.
ACCESSION   NM_001004241 XM_217005
VERSION     NM_001004241.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1638)
  AUTHORS   Edelman,D., Kalia,H., Delio,M., Alani,M., Krishnamurthy,K., Abd,M.,
            Auton,A., Wang,T., Wolkoff,A.W. and Morrow,B.E.
  TITLE     Genetic analysis of nonalcoholic fatty liver disease within a
            Caribbean-Hispanic population
  JOURNAL   Mol Genet Genomic Med 3 (6), 558-569 (2015)
   PUBMED   26740948
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1638)
  AUTHORS   Ott,C., Dorsch,E., Fraunholz,M., Straub,S. and Kozjak-Pavlovic,V.
  TITLE     Detailed analysis of the human mitochondrial contact site complex
            indicate a hierarchy of subunits
  JOURNAL   PLoS One 10 (3), e0120213 (2015)
   PUBMED   25781180
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1638)
  AUTHORS   Hohr,A.I., Straub,S.P., Warscheid,B., Becker,T. and Wiedemann,N.
  TITLE     Assembly of beta-barrel proteins in the mitochondrial outer
            membrane
  JOURNAL   Biochim Biophys Acta 1853 (1), 74-88 (2015)
   PUBMED   25305573
  REMARK    Review article
REFERENCE   4  (bases 1 to 1638)
  AUTHORS   Ott,C., Ross,K., Straub,S., Thiede,B., Gotz,M., Goosmann,C.,
            Krischke,M., Mueller,M.J., Krohne,G., Rudel,T. and
            Kozjak-Pavlovic,V.
  TITLE     Sam50 functions in mitochondrial intermembrane space bridging and
            biogenesis of respiratory complexes
  JOURNAL   Mol Cell Biol 32 (6), 1173-1188 (2012)
   PUBMED   22252321
REFERENCE   5  (bases 1 to 1638)
  AUTHORS   Zhao,X., Leon,I.R., Bak,S., Mogensen,M., Wrzesinski,K., Hojlund,K.
            and Jensen,O.N.
  TITLE     Phosphoproteome analysis of functional mitochondria isolated from
            resting human muscle reveals extensive phosphorylation of inner
            membrane protein complexes and enzymes
  JOURNAL   Mol Cell Proteomics 10 (1), M110.000299 (2011)
   PUBMED   20833797
REFERENCE   6  (bases 1 to 1638)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   7  (bases 1 to 1638)
  AUTHORS   Humphries,A.D., Streimann,I.C., Stojanovski,D., Johnston,A.J.,
            Yano,M., Hoogenraad,N.J. and Ryan,M.T.
  TITLE     Dissection of the mitochondrial import and assembly pathway for
            human Tom40
  JOURNAL   J Biol Chem 280 (12), 11535-11543 (2005)
   PUBMED   15644312
REFERENCE   8  (bases 1 to 1638)
  AUTHORS   Da Cruz,S., Xenarios,I., Langridge,J., Vilbois,F., Parone,P.A. and
            Martinou,J.C.
  TITLE     Proteomic analysis of the mouse liver mitochondrial inner membrane
  JOURNAL   J Biol Chem 278 (42), 41566-41571 (2003)
   PUBMED   12865426
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC079302.1.
            
            On Sep 10, 2004 this sequence version replaced XM_217005.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079302.1, SRR8487227.88076.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1638
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..1638
                     /gene="Samm50"
                     /note="SAMM50 sorting and assembly machinery component"
                     /db_xref="GeneID:300111"
                     /db_xref="RGD:1303219"
     exon            1..83
                     /gene="Samm50"
                     /inference="alignment:Splign:2.1.0"
     CDS             63..1472
                     /gene="Samm50"
                     /note="sorting and assembly machinery component 50 homolog
                     A"
                     /codon_start=1
                     /product="sorting and assembly machinery component 50
                     homolog"
                     /protein_id="NP_001004241.1"
                     /db_xref="GeneID:300111"
                     /db_xref="RGD:1303219"
                     /translation="MGTVHARSLEPLPSSGTDFGALGEEAEFVEVEPEAKQEILENKD
                     VVVQHVHFDGLERTKDDIIICEIGEVFKAKNLIEVMRRSHEAREKLLRLGIFRQVDVL
                     IDTCHGEDALPNGLDVTFEVTELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVT
                     FQFSYGTKETSYGLSFFKPQPGNFEKNFSVNLYKVTGQFPWSSLRETDRGVSAEYSFP
                     LCKTSHTVKWEGVWRELGCLARTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRG
                     ALLKVNQELAGYTGGDVSFIKEDFELQLNKPLVLDSVFSTSLWGGMLVPIGDKLSSIA
                     DRFYLGGPTSVRGFSMHSIGPQSEGDYLGGEAYWAGGLHLYTPLPFRPGQGGFGELFR
                     THFFLNAGNLCNLNYGEGPRAHIRKLAECIRWSYGAGIVLRLGNIARLELNYCIPMGV
                     QRGDRICDGVQFGAGIRFL"
     exon            84..194
                     /gene="Samm50"
                     /inference="alignment:Splign:2.1.0"
     exon            195..296
                     /gene="Samm50"
                     /inference="alignment:Splign:2.1.0"
     exon            297..384
                     /gene="Samm50"
                     /inference="alignment:Splign:2.1.0"
     exon            385..491
                     /gene="Samm50"
                     /inference="alignment:Splign:2.1.0"
     exon            492..622
                     /gene="Samm50"
                     /inference="alignment:Splign:2.1.0"
     exon            623..710
                     /gene="Samm50"
                     /inference="alignment:Splign:2.1.0"
     exon            711..839
                     /gene="Samm50"
                     /inference="alignment:Splign:2.1.0"
     exon            840..911
                     /gene="Samm50"
                     /inference="alignment:Splign:2.1.0"
     exon            912..998
                     /gene="Samm50"
                     /inference="alignment:Splign:2.1.0"
     exon            999..1069
                     /gene="Samm50"
                     /inference="alignment:Splign:2.1.0"
     exon            1070..1137
                     /gene="Samm50"
                     /inference="alignment:Splign:2.1.0"
     exon            1138..1284
                     /gene="Samm50"
                     /inference="alignment:Splign:2.1.0"
     exon            1285..1426
                     /gene="Samm50"
                     /inference="alignment:Splign:2.1.0"
     exon            1427..1611
                     /gene="Samm50"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtttgtagct gagttgggtt gggcgcgggc acctccgtgg ggcagcagcc ggagagggag
       61 ccatggggac agtgcacgcc aggagtctgg agcctctccc atcaagtgga actgactttg
      121 gagcactggg ggaggaagcg gagtttgtgg aagttgaacc tgaagcaaaa caggaaatcc
      181 tggaaaacaa agatgtggtg gttcagcatg ttcattttga tggacttgaa cggaccaagg
      241 atgacatcat catatgtgaa atcggagagg tttttaaggc taaaaacctc attgaggtaa
      301 tgcggcggtc tcatgaggcc cgtgaaaaac tgcttcgcct aggaattttt agacaagtgg
      361 atgttttgat agacacgtgt catggcgaag atgccctgcc aaatgggcta gatgtcacct
      421 ttgaagttac agagctaagg agactgacgg gcagttacaa caccatggtt ggaaacaacg
      481 aaggcagtat ggtactcggc ctcaaactcc ccaatcttct gggacgtgca gaaaaagtga
      541 ctttccagtt ttcttatgga accaaagaaa cttcctacgg cctgtctttc ttcaagccac
      601 agcctgggaa cttcgagaaa aacttctcgg taaacttata taaagttacc gggcagttcc
      661 catggagctc acttcgggag acggacagag gagtgtctgc tgagtacagt tttccactat
      721 gcaagaccag tcacactgtc aagtgggagg gtgtgtggcg ggaactgggc tgcctcgcgc
      781 ggactgcgtc attcgctgtg cggaaggaaa gtggacactc attgaagtcg tctctctcgc
      841 atgccatggt cattgactct cggaattcat ctatcttgcc aagaagaggg gccttgctca
      901 aagtcaacca ggagctggca ggctacactg gaggagatgt gagcttcatc aaggaagact
      961 ttgagcttca gctgaataag ccgcttgtat tggattcggt gttctccacg tccctctggg
     1021 gtggaatgct ggtgcccatc ggtgacaagc tatccagcat tgctgacagg ttttacctgg
     1081 gaggccccac gagcgtccga ggatttagca tgcacagcat cggaccccag agcgaaggag
     1141 attacctggg cggggaggca tactgggccg ggggcctgca cctctatacc ccactgcctt
     1201 tccggccagg ccagggtggc ttcggagagc ttttcagaac tcactttttc ctcaatgctg
     1261 gcaacctgtg caacctcaac tacggtgagg gccccagagc ccacatccgg aagctggctg
     1321 aatgcatccg ctggtcctat ggtgcaggca tcgtcctccg gcttggcaac attgctcggc
     1381 tggagctgaa ctactgcatt cctatgggtg tgcagcgagg cgacaggatt tgtgatggcg
     1441 tccagtttgg agctgggatt cggttcctgt aacttgagtc ccaggggcag cgtggatgag
     1501 caacgggact ctcccaggct acatgcctgt ttggaggtga cacagctgag tgcttctggg
     1561 ccgtcatcct tatgggaaat cacgtcaata aattttaaac actcagctgt aaaaaaaaaa
     1621 aaaaaaaaaa aaaaaaaa
//
