LOCUS       NM_001419900            5657 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus sterile alpha motif domain containing 9 like
            (Samd9l), mRNA.
ACCESSION   NM_001419900 XM_039108585
VERSION     NM_001419900.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5657)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 5657)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Apr 21, 2023 this sequence version replaced XM_039108585.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.400987.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-271               JAXUCZ010000004.1  32330834-32331104   c
            272-362             JAXUCZ010000004.1  32328783-32328873   c
            363-470             JAXUCZ010000004.1  32327243-32327350   c
            471-621             JAXUCZ010000004.1  32325416-32325566   c
            622-5657            JAXUCZ010000004.1  32316748-32321783   c
FEATURES             Location/Qualifiers
     source          1..5657
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q13"
     gene            1..5657
                     /gene="Samd9l"
                     /gene_synonym="Samd9l1"
                     /note="sterile alpha motif domain containing 9 like"
                     /db_xref="GeneID:103690031"
                     /db_xref="RGD:1562531"
     exon            1..271
                     /gene="Samd9l"
                     /gene_synonym="Samd9l1"
                     /inference="alignment:Splign:2.1.0"
     exon            272..362
                     /gene="Samd9l"
                     /gene_synonym="Samd9l1"
                     /inference="alignment:Splign:2.1.0"
     exon            363..470
                     /gene="Samd9l"
                     /gene_synonym="Samd9l1"
                     /inference="alignment:Splign:2.1.0"
     exon            471..621
                     /gene="Samd9l"
                     /gene_synonym="Samd9l1"
                     /inference="alignment:Splign:2.1.0"
     exon            622..5657
                     /gene="Samd9l"
                     /gene_synonym="Samd9l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             644..5368
                     /gene="Samd9l"
                     /gene_synonym="Samd9l1"
                     /note="sterile alpha motif domain-containing protein
                     9-like"
                     /codon_start=1
                     /product="sterile alpha motif domain containing 9 like 1"
                     /protein_id="NP_001406829.1"
                     /db_xref="GeneID:103690031"
                     /db_xref="RGD:1562531"
                     /translation="MDRHVTQPKLIKDWTKEHVRKWITEDLKIDEKYAQIVFEEEVTG
                     MVLQELTEKDLREMGLPRGPALLIKRMYNKLISSPEGHNQDSRQLNNKTLSINEQPKK
                     SNSEEENSISSNSDFGLRETGQNEEQEPSIMKVNTLGDVETKDMKDNMPKSEQMSCMP
                     HPFNFAHDAKRYIEHSILRVAETGPLNLIDPVHEFKAFTNTETATQEQMKMKFSNETF
                     RFAAACMNTRTNGTIHFGVKDKPHGEIVGVQVTSKDIFINHFNVMITKYFEDSDIHEA
                     RACIREPRFVEVLLLNNTQSNRFVIEVDVIPKHSICQEKYFYVMLQTCTGTTWKQSKD
                     TSLFVREGASSRDILGNPKQRDREFKKFLENLKMSIASRKAAEECMVVSKKDSEGLKL
                     SKLLTRHQGSLDKSYYDWYILVTNSCVPTQMEHLDFIKEIKLFAVLDFDPYSHIKGVV
                     KAYRESRVANLHLPSHYEEKTTIEEKISTLKLYEQPSWIFCNGRVDLSCQPLEPHLWQ
                     RDRASGVRKLISFLTDGNIIARGKVLVVFLLLSPVENQKDPLLETFCAFYQVFNGMDN
                     MLCICVNPSIYQQWSDLLQVRLEIKDDLAKHSISTLNIELVNSTILKLKSVIQSSRRF
                     LPSCGSSSVILEKMDEDIMSALEILCENECRDTDIEKDESQFLEFKKLREEHFYRGGR
                     VSWWNFYFSSENYSSAFVKRDNFEELTTLIQQCADSPKPVFAKVINLYHHPGCGGTTL
                     AMHVLWDLKQKFRCAVLKNKATDFIEIGEQVSKLISYKASSHQDYIPVLLLVDDFEEQ
                     QNTYILQNAINSFIAEKGVRYEKTLVIILNCMRSQNPDESAKLADSISLKYQLSPKEK
                     RAFEAKLQEIEKEYKDCENFYSFMILKDNFDTTYIKNVVKNTLKDLDAHSRKAQFISY
                     LALLNTYVIDSTISVSQCEIFLGITYTIKRGKPETVEDNMGTYSTLLIRTEVSDYGRY
                     AGIRIIHPLIAIHCLKELEMSHGMDKCQIALNMLEENIFYDSGIGRDKFKHDVQTLLL
                     TRQRKEHGAEIDTLFSPFIEELQNEQTEKVLTAGSDRFPQNAFICQALARHFYLKEKN
                     FSTALVWANQAKRKAPKNSYISDTLGQVYKSEIRQWLSKNSTCRSISVDDLTRFLEVA
                     EKASKAFKESQEQTDSKDYEIEVWSPQKSQRRYDTYNTAGFFGEIEVGLDTIQLLQLT
                     PLFHKENEMSKESMAQFLSGKGTIPPDPKGEYYVVLNKFKSFLQNLQSDLKRCFDFFL
                     DYMGLLKPRNTPKELTELSLSKKVSRCFKKYADLFCQELQGKEDLLLQEENCRKRIKA
                     WRADTFSGLLEYLNPNHKEANNMENIVEHYTFLLQHTLNKQLSKALIKDTQNFILANI
                     ILSCLKPSSKHILPFSTLKKKLREVLQIVGLTHSYPDPYFLACLLFWPENKELDQDSS
                     LIEKYVSSLNRSFRRQYKHMCRSRQPSTLFYLGQKKGLNSLVHKAEIERYFSEVQDSN
                     SFWQSGVVWEKGEVKDILRLLDGQAEGKLISLEYGTEAKIKIPVTSVYSGPLRSGRNI
                     ERVSFYLGFSIEGPLAYGIKVI"
ORIGIN      
        1 caggatacat aagaccgact ttcctttcca agatatattt agtcactatt ttatcatagc
       61 aatataaatc aaactaggag aaaattggta ccagaaagca ggctattatt atgtcagacc
      121 tgcccatgaa attgcgggga aaattgtaga cctgtttgtt caaagcttag tgggttgtgt
      181 tggggaccct ggacgttaag agttcggaga gcaatgctga tgaaggaggc ctgcccgggg
      241 aagtttcaga aggaagtaaa gactctgtca ggatcctgag aattgtatct gaagaaaaat
      301 aagaaaacac agcttaaagt cactgctttc aagcttctgg aagaatagtt ttcaggagac
      361 tgttaaatcc aaagaggaag tcttcttgaa tagccaaggg ggcgtggctg gttaaagagt
      421 taactgagtg ctttccactg gaaactgaca ctgcttctga cccttcctgg gaaagcttta
      481 cgaagaccag ctctgtcctg catgtgtatc tgctttctgg tgacttacag aacatgactt
      541 tgccaaatat ccaaatgaag tagctccaag aacacacagc tcaagtttct tttataaaaa
      601 gaagtctcca ggaaagactc gggaacaacc ttgaagcttg gacatggata ggcacgtaac
      661 tcaacctaaa ttgatcaaag actggaccaa agaacacgta agaaaatgga ttactgaaga
      721 ccttaaaatt gatgagaaat atgcccaaat cgtgtttgaa gaagaggtaa cagggatggt
      781 cctgcaggaa ctaactgaaa aggatcttag agaaatgggc ttgccacggg gtccagcact
      841 tctgataaaa cgtatgtata acaaactaat tagttcccct gaaggtcaca atcaagattc
      901 cagacaatta aataataaaa cactctctat aaatgaacaa ccaaaaaaga gtaacagtga
      961 agaagaaaac tcaatttcat cgaacagtga ctttggtctt agagagacag ggcagaatga
     1021 agaacaagaa ccaagtatta tgaaagtaaa cacattaggt gatgtagaga ctaaagacat
     1081 gaaagataat atgcccaaat cagaacagat gtcttgcatg ccacaccctt ttaattttgc
     1141 ccatgatgcc aaacgataca tagaacattc tattttacga gtggctgaga cagggccact
     1201 caatctcatt gacccagttc atgaattcaa agccttcaca aacacagaga cagccacaca
     1261 agagcaaatg aagatgaaat tcagcaacga gacgttccga tttgcagcag cttgcatgaa
     1321 tacacgtacc aatggtacta tccattttgg agtaaaggac aaaccacatg gggaaattgt
     1381 tggtgtgcaa gtcaccagta aagacatctt tattaaccac ttcaatgtga tgatcaccaa
     1441 gtattttgaa gacagtgata tccatgaagc cagggcgtgt atccgggaac caaggtttgt
     1501 ggaagtcctt ctgctgaaca atacacaatc taatagattt gtcatcgagg tggatgttat
     1561 tcccaaacat tctatatgtc aagaaaagta tttctacgtc atgttgcaaa cttgcacagg
     1621 tacaacatgg aaacaaagca aagatacttc attgtttgtg agagaaggag ctagctctcg
     1681 ggatatcctg ggcaacccca aacaacggga tagagagttc aaaaaatttc ttgagaattt
     1741 aaagatgtcg atagcatcta gaaaagcagc ggaagaatgt atggtggtat ctaagaaaga
     1801 cagtgaagga ctaaaactgt ctaaactttt gaccagacac caaggctcac ttgataaatc
     1861 ttactatgat tggtacattc ttgtaacaaa ttcctgtgta ccaacgcaaa tggagcactt
     1921 agattttata aaggaaatta aattgtttgc tgtgctagat tttgatcctt actctcacat
     1981 caagggagtg gtcaaagctt acagagaaag cagggtagca aaccttcacc tacccagtca
     2041 ttatgaggaa aaaactacca tagaagagaa aatttccact ctgaaacttt atgagcagcc
     2101 cagttggatc ttctgtaatg gcagagtaga cttgtcatgt caacctctag agccacattt
     2161 atggcagaga gatagagctt ctggcgttag aaagcttatt tcattcctca cagatggaaa
     2221 tataatagca agggggaagg ttttggtggt gtttctctta ctttctccag tagaaaatca
     2281 aaaggatcca ctccttgaga ctttctgtgc tttctatcaa gtttttaatg gaatggataa
     2341 tatgttatgc atctgtgtaa acccaagtat ctaccaacaa tggagtgatc tcctacaagt
     2401 aagactagaa atcaaagatg atttagcaaa acatagcatt tccactttaa acatagaact
     2461 ggtcaacagc accatcctca aactgaaatc agtgattcag tcttcaagga gatttttgcc
     2521 ctcctgtggt tcctcctcag ttattctgga gaaaatggat gaagacatca tgagtgcatt
     2581 ggaaatcctc tgtgaaaatg agtgtagaga cacagacata gagaaagatg aatctcaatt
     2641 cctagaattt aagaaattga gagaagaaca cttttatcga ggaggcagag tatcctggtg
     2701 gaacttttat ttttcttctg aaaactattc ttcagctttt gtaaaaagag ataattttga
     2761 agagctaaca actttaatac agcagtgtgc agactctcct aaaccagtat ttgccaaagt
     2821 catcaacttg taccatcacc caggctgtgg aggtacaaca ttggctatgc atgttctttg
     2881 ggacttaaag cagaagttcc ggtgtgctgt cttgaaaaac aaagcaaccg attttataga
     2941 gattggagag caagtaagca agcttatcag ctacaaggct tccagccacc aggattacat
     3001 tcccgttctt ctccttgtgg atgatttcga agaacaacag aacacctata ttctacagaa
     3061 tgccatcaat tcctttatag cagaaaaggg tgtgagatat gaaaaaactt tagtaatcat
     3121 cctaaactgt atgagatctc agaatccaga tgaaagtgca aaattagctg atagcatttc
     3181 actaaaatac caactctctc caaaagaaaa aagagccttt gaggccaaac tgcaggaaat
     3241 agaaaaggag tacaaggact gtgaaaactt ttattccttc atgatcttga aagacaattt
     3301 tgatacaact tatataaaga atgtagtgaa gaatacactg aaggacctgg atgctcacag
     3361 cagaaaagcc cagttcattt cttatctggc attactgaac acttacgtta tagattctac
     3421 catttcagta tcacagtgtg aaatattttt gggaatcact tacacaatta aacgtggaaa
     3481 acccgaaact gtagaagaca acatgggaac ctattctaca cttcttatta gaaccgaagt
     3541 ttcagattat gggaggtatg ctgggatacg tatcattcac cctctaattg ccattcactg
     3601 tttaaaagaa ctggaaatga gccacggaat ggataagtgt cagattgcac tgaatatgct
     3661 agaagagaac atattctatg attctggaat aggaagagac aaatttaagc acgatgtgca
     3721 aactctcttg cttacgagac aacgcaagga gcatggagct gaaatagaca cactgttttc
     3781 cccattcatt gaagaattgc agaatgagca aactgaaaag gtcttgactg caggaagtga
     3841 ccgattccca caaaatgcat tcatttgtca agctttagca agacacttct atcttaaaga
     3901 gaagaacttt agcactgctc tggtctgggc aaatcaggcc aaaaggaaag cacctaagaa
     3961 ttcctatatt tcagacacac ttggtcaagt ttacaaaagt gagatcagac agtggttaag
     4021 caaaaatagc acgtgtagaa gcattagtgt ggatgattta acacgcttcc tagaagttgc
     4081 tgaaaaggct tcgaaagcct tcaaagagtc tcaggaacaa actgatagta aagactatga
     4141 aattgaggtc tggtcaccac agaagtccca aagaagatat gacacataca atacagctgg
     4201 cttctttggg gaaatagaag tgggtcttga cactatccag cttcttcagc tcacacctct
     4261 tttccataaa gaaaatgaaa tgtcaaaaga atctatggca cagtttttat ctggaaaggg
     4321 gaccatccct cctgacccta aaggtgaata ttatgttgtt ctcaacaaat ttaaatcctt
     4381 cctacagaat ttacagtcag atttgaaaag atgctttgat ttttttttgg attatatggg
     4441 tcttctgaaa ccaaggaaca ccccaaaaga attgacagaa ctctcactaa gtaagaaagt
     4501 cagccgctgt ttcaagaaat atgcagatct tttctgccag gagttacagg gcaaagaaga
     4561 tctcttactg caagaggaga actgtaggaa gcgcataaaa gcttggcgag cagatacatt
     4621 ttcaggactc cttgaatatc ttaacccaaa ccacaaagaa gcgaacaaca tggaaaatat
     4681 agtggaacac tataccttcc tattacagca taccttaaac aagcaattgt caaaggcact
     4741 gataaaggac acacaaaatt tcattttggc caacattatt ctcagttgtc taaagcccag
     4801 ttccaagcac atcctgccat ttagcacact gaaaaaaaag ctcagagagg tcctgcagat
     4861 tgtgggacta actcattcgt atcctgaccc ttatttcctg gcctgtctcc tattctggcc
     4921 agaaaacaaa gagctagatc aagattcctc actgatagaa aagtatgtct catccttgaa
     4981 tcgatctttc aggagacagt acaagcacat gtgtaggtcc aggcagccaa gcacactctt
     5041 ctacttgggg cagaagaagg gtcttaacag tcttgttcac aaggctgaaa tcgagcgcta
     5101 cttcagtgaa gtacaagatt caaattcttt ctggcagagt ggagtagtgt gggaaaaagg
     5161 agaggtcaaa gacatcctac gcctgctgga tggccaggct gaaggcaaac taatctcact
     5221 agaatatgga acagaggcaa aaataaaaat acccgtgact tctgtgtatt ctggtccact
     5281 cagaagtgga aggaacatag agagagtgtc cttctacctt ggattttcca ttgagggccc
     5341 tctggcatat ggcataaaag taatatgagg aggtatatta gttcaacaat gttattttgc
     5401 atctctcatt gtacttactc ttcctagccc atagaatttg catggcatta ttggcttaat
     5461 tataatcaca cagtttgctt ctttttctct gaatcagttc tggaaaactt tgtaagacag
     5521 ggaatatatc cataccacag agcttggcca caagcaacag tcattccata tcctcgttat
     5581 gcactcccaa gtagatatat ttcagttggt ccctgagtca cactctaact ggtcaataaa
     5641 aatctgttgt aaattaa
//
