LOCUS       NM_001399774            6657 bp    mRNA    linear   ROD 17-FEB-2024
DEFINITION  Rattus norvegicus sterile alpha motif domain containing 4A
            (Samd4a), mRNA.
ACCESSION   NM_001399774 XM_039093260
VERSION     NM_001399774.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6657)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   2  (bases 1 to 6657)
  AUTHORS   Baez,M.V. and Boccaccio,G.L.
  TITLE     Mammalian Smaug is a translational repressor that forms cytoplasmic
            foci similar to stress granules
  JOURNAL   J Biol Chem 280 (52), 43131-43140 (2005)
   PUBMED   16221671
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000262.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001399774.2.
            
            On Jan 14, 2022 this sequence version replaced XM_039093260.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC168894.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-256               JACYVU010000262.1  2359135-2359390
            257-775             JACYVU010000262.1  2374076-2374594
            776-1039            JACYVU010000262.1  2410659-2410922
            1040-1149           JACYVU010000262.1  2421018-2421127
            1150-1236           JACYVU010000262.1  2423088-2423174
            1237-1549           JACYVU010000262.1  2430036-2430348
            1550-1635           JACYVU010000262.1  2434857-2434942
            1636-1754           JACYVU010000262.1  2441093-2441211
            1755-1956           JACYVU010000262.1  2445227-2445428
            1957-2083           JACYVU010000262.1  2446506-2446632
            2084-2167           JACYVU010000262.1  2453617-2453700
            2168-6657           JACYVU010000262.1  2459261-2463750
FEATURES             Location/Qualifiers
     source          1..6657
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p14"
     gene            1..6657
                     /gene="Samd4a"
                     /gene_synonym="Samd4"
                     /note="sterile alpha motif domain containing 4A"
                     /db_xref="GeneID:305826"
                     /db_xref="RGD:1310361"
     exon            1..256
                     /gene="Samd4a"
                     /gene_synonym="Samd4"
                     /inference="alignment:Splign:2.1.0"
     exon            257..775
                     /gene="Samd4a"
                     /gene_synonym="Samd4"
                     /inference="alignment:Splign:2.1.0"
     CDS             364..2196
                     /gene="Samd4a"
                     /gene_synonym="Samd4"
                     /note="smaug 1; sterile alpha motif domain-containing
                     protein 4A; sterile alpha motif domain containing 4"
                     /codon_start=1
                     /product="protein Smaug homolog 1"
                     /protein_id="NP_001386703.1"
                     /db_xref="GeneID:305826"
                     /db_xref="RGD:1310361"
                     /translation="MKLLPKILAHSIDHNQHIEESRQLLSYALIHPATSLEDRSALAM
                     WLNHLEDRTSTSFGSQNRGRSDSVDYGQTHYYHQRQNSEDKLNGWQNSRDSGICISAS
                     NWQDKSLGCENGHVPLYSSSSVPATINTIGTSTSTILSGQAHHSPLKRSVSLTPPMNV
                     PNQPLGHGWMSHEDLRARGPQCLPSDHAPLSPQSSVASSGSGGSEHLEDQTTARNTFQ
                     EEGSGMKDVPAWLKSLRLHKYAALFSQMTYEEMMALTECQLEAQNVTKGARHKIVISI
                     QKLKERQNLLKSLERDIIEGGSLRIPLQELHQMILTPIKAYSSPSTTPEVRRREPLLM
                     ESPSPDCKDSAATVTSATASASAGASGGLQPPQLSSCDGELAVAPLPEGDLPGQFTRV
                     MGKVCTQLLVSRPDEENISSYLQLLDKCLVHEAFTETQKKRLLSWKQQVQKLFRSFPR
                     KTLLDISGYRQQRNRGFGQSNSLPTASSVGSGMGRRNPRQYQIASRNVPSARLGLLGT
                     SGFVSSNQRHTAANPTIMKQGRQNLWFANPGGSNSVPSRTHSSVQKTRSLPVHTSPQN
                     MLMFQQPEFQLPVTEPDINNRLESLCLSMTEHALGDGVDRTSTI"
     exon            776..1039
                     /gene="Samd4a"
                     /gene_synonym="Samd4"
                     /inference="alignment:Splign:2.1.0"
     exon            1040..1149
                     /gene="Samd4a"
                     /gene_synonym="Samd4"
                     /inference="alignment:Splign:2.1.0"
     exon            1150..1236
                     /gene="Samd4a"
                     /gene_synonym="Samd4"
                     /inference="alignment:Splign:2.1.0"
     exon            1237..1549
                     /gene="Samd4a"
                     /gene_synonym="Samd4"
                     /inference="alignment:Splign:2.1.0"
     exon            1550..1635
                     /gene="Samd4a"
                     /gene_synonym="Samd4"
                     /inference="alignment:Splign:2.1.0"
     exon            1636..1754
                     /gene="Samd4a"
                     /gene_synonym="Samd4"
                     /inference="alignment:Splign:2.1.0"
     exon            1755..1956
                     /gene="Samd4a"
                     /gene_synonym="Samd4"
                     /inference="alignment:Splign:2.1.0"
     exon            1957..2083
                     /gene="Samd4a"
                     /gene_synonym="Samd4"
                     /inference="alignment:Splign:2.1.0"
     exon            2084..2167
                     /gene="Samd4a"
                     /gene_synonym="Samd4"
                     /inference="alignment:Splign:2.1.0"
     exon            2168..6657
                     /gene="Samd4a"
                     /gene_synonym="Samd4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaggagatgg agcagtccct taagtgatca ttccatccac gcacacggct ttcacctaac
       61 atctggttca agtgtaatgt tttcagctcc gcaccacctg gacagcgtct gtgccctccc
      121 cttcaaatgc agctcagtat tatggtcctc taaccaagag aaccgtgctc ccctcgccgc
      181 atgtctcgtg gttcaccggc agaccagtga gttcacacgt cttcaccaga cgactctccg
      241 gagcagctgt ttagaggaat cattaaccaa tggcaacagg aatccaagga taaagtgatt
      301 tcccttctgc taactcacct gcctttgctg aagccaggaa acctcgacgc gaaagtagag
      361 tatatgaaac tgctgcccaa gatcctggca cactctatcg accataacca gcacattgag
      421 gagagcaggc agctgctgtc ctatgctttg atccaccctg ccacttccct ggaagaccgc
      481 agtgcactag ccatgtggct gaaccacttg gaggaccgca catccaccag cttcggtagt
      541 cagaaccgag gccgctcgga ctctgtggat tacggacaga cccactacta tcaccaaaga
      601 cagaactctg aggacaagct caatggctgg cagaactctc gggattctgg gatttgcatc
      661 agcgcctcca actggcagga caagagcctg ggctgtgaga acggccacgt gcccctgtat
      721 tcttcctcgt ctgtccccgc cacgatcaac acgattggaa ccagcacaag tacgattctc
      781 tcaggccagg cacaccacag ccctttgaaa cgatctgtgt cccttacccc acccatgaat
      841 gtgccaaacc agcctctagg acatggatgg atgtctcatg aggacttacg agctagagga
      901 cctcagtgcc tcccatccga tcatgccccc ctgtctccac aaagcagtgt agcctcttca
      961 ggaagtggtg ggagtgaaca cttagaagat cagaccactg ctcgtaacac attccaagaa
     1021 gaaggtagtg gtatgaaaga tgttccagct tggttaaaaa gccttcgcct gcacaagtac
     1081 gctgcgctct tctcacagat gacttacgag gaaatgatgg ccctcacgga gtgtcaactg
     1141 gaggctcaga atgttaccaa aggggcaaga cacaaaatcg tcatcagcat tcagaagctc
     1201 aaagaaagac agaacctcct gaagtcttta gaaagggaca tcatcgaagg aggcagcctg
     1261 cgcatccccc tccaggagct gcatcagatg atcctgacgc ccatcaaggc ctacagctct
     1321 cccagtacca cccctgaggt gcgacgccgg gagcccttgc tgatggagag cccgagtcct
     1381 gactgcaaag acagtgctgc tacagtcacc agcgccacag ccagtgcctc agccggtgcc
     1441 agcggtgggc tgcaaccacc ccagctaagc agctgcgacg gggagctggc tgtcgcccct
     1501 ctgccggagg gggatctccc gggacagttc acccgagtca tggggaaagt gtgcacacag
     1561 ctcttggtct ccagacccga cgaggaaaat ataagctcct atctacagct cttagacaag
     1621 tgtctcgttc acgaggcatt tacagagaca cagaaaaaaa gattgttgtc atggaaacag
     1681 caggtgcaga agctctttcg gtctttccct cggaaaaccc ttctagacat atcaggatat
     1741 cgacagcaac gaaatcgtgg ctttggacag tccaactccc tcccgacggc cagctctgtg
     1801 ggcagtggca tgggtagacg gaacccacga cagtaccaga tcgcatctcg gaacgtccct
     1861 tctgcccgcc ttggtctctt gggcaccagt ggatttgtca gctccaacca gcgccacact
     1921 gctgccaacc ccaccatcat gaaacaagga agacagaacc tctggtttgc caaccctggg
     1981 ggcagcaaca gcgtacccag ccgcacccac agctccgtcc agaagacccg ctcgctgccc
     2041 gtgcatactt ccccacaaaa catgctgatg ttccagcaac cagaatttca gcttcccgtg
     2101 actgaacctg acatcaacaa taggctggag tccttgtgcc tcagtatgac ggagcatgcc
     2161 ctgggagacg gggttgaccg gacctccaca atctagaaac tgaagatgac agtgaccgcg
     2221 ctggccgtga aatggactgc tgcgggccca gtgtcagcca tcttcagggc tgcagagact
     2281 cttccaagac actttgcagc cttttccccc tggtccctcg cccattttga ttttgtgaga
     2341 gcgtaggtca tccttgtaaa catatcagta gacctggggt tggttatgtt gtcatttgtt
     2401 tctgtcatgg gatgggacgg tatgcagggt ggggagggga ctctcgggga acgtggggct
     2461 gggagggggt ggagggatgc tagtggcttc ctggattgaa atggagtggg gaagagtatt
     2521 gctaggagag ttatgcaaga gacacacggg agggagggag aagccctgcc ctggggagcc
     2581 ttctcagtgc ccagcttcgc agtcaggccg cagaagacag agcacacaag caagcagagc
     2641 aagatggcgg ctggcctgtt tgtgtctccc ctgactggtg ttccctgagg aaaaaacaac
     2701 cacgagagag ggcgacaagg caacaagggc aagaggaaga agttccctcc agcaaacttt
     2761 cagataaact ttgatttgtg tattgtttac ataagaattt taaagggtac ataaaagtgt
     2821 cgagtgtggg tagaacttcc cttcacacta tgggtttttt tttttggttt tttttttttt
     2881 ttgtaaaaga ctgattcctg ttacagattc atttttgtct catctatatt tttataatag
     2941 tagcagggtt gtcttttttt aaaatggctg ccaagctctg cttctcgaga agacgattgg
     3001 gcctcaaggc tgccgtcttc caccataaga tgggaggagc gcgtggacgg gttggaagga
     3061 taaggatgtg gctgggatga acggagtgct aggcacagac acgaggatgg tggcgccgtg
     3121 tgaccagtta tggatttact cataggtttc cctcagagat gataaactct gcaacctctt
     3181 tctgggctgg atttgcaacc cacccaaggc ctgtcttgct ccccaccctc cccaccccat
     3241 cctaccagcc ctggtctcac cccacagaca cacccatagg tacatgtccc tctagaggag
     3301 gagagacacg gtagatggtt ttcttttgca cgaagcccgg cactagaaca tttgtgacga
     3361 agactttgca ggaacctaga cccgggagct gtatctcttc tcactctttc tctctgctga
     3421 agaagaatgg cccagcaaat agtgtcacag agaacatgca gagaggcatt aagtcctcat
     3481 ggtccagctc catcgagggg gcaggcagat gaaagcagaa gcaggaaagg tcacacttac
     3541 aagagaagtg gtggctctcc ccaggcctgt gagtcagaga ttctctgtgt ggcgggatgg
     3601 cttatccagc cacgcacagg aaagagaaaa cacacgcaca tcacacagcc ggaaatttac
     3661 tgtgacaccg tgctgtcata ggtctgtctc ttaagggcag caaagaatag ctcagaattt
     3721 aatgcatcgg aggatgttag agggaatcaa aaggaaattg tgtgctgcac tggggaatcg
     3781 gtcgcataaa tgtgacggta tgagcgagca gccagaggca tgatctgggg cataacataa
     3841 ggcctgttta tgtgtgagac tgattcctct tttaaaaaaa aaagaagaag aaaagtgaag
     3901 tttaaaacca gaccatgcaa atgactttac ctctggtttt tttttttttt tttcaagtta
     3961 atgaagtgca cacagactct aaaggcctta ataaaaaaat ccacacaacg ttgcctgtca
     4021 cgattacaaa cgtacaacct agcccagcca tggatgccct gacagagatt tagggcaggg
     4081 ccgagggcac cttaagaaga tagcgctttt agtgaacaca gaggacttag atacgctgtc
     4141 tggtgtagaa cttcacaaca cagaaacaaa aggttcagga tgtacctagg aagcgcaagg
     4201 ccctgggttc ggtccccagc tccaaaaaaa aaaaacaaaa aaaaaaaaaa aaaaaaaaaa
     4261 aaggttcagg atgctccgtg ggtgaccagg tcttgaagat gcaaattcac gtgcagaaag
     4321 aggtagcatg tttagctttt atatgtgtat atatatatat atatagagag agagagagaa
     4381 tttttttttt aaccaagtgc cattaacatt catccctcat gtctcttttc caaacaagca
     4441 gtgttgggga aggacctggg atggagcatg taaggcagaa taggttagga tgccgaaggc
     4501 caaaggtaag gccgagaggg tctgaggaag tgtttggagg acgctgggaa ggttcacgga
     4561 gaagagcctc aggactccac gtcctgtagg aaggagaagg tgttcgagtc tgctacacgc
     4621 agcgcacgta cccgtaagga cgtgggctgt tcagaaacac aatcacagga gcacgcgtct
     4681 tttaagagga agaagaccat agagtatatt tgcaaatctg aatttctatt tattccctca
     4741 tggagtatag aagcaatggt tatctgatta ttagagatat tattttggat atgttactta
     4801 ttaacgcgct atggctggta accatgataa agtctgttat tagtaacaac ataattcttt
     4861 ttttaaaaaa aaaaagggaa aaaaaagaaa agcttatttt tcattgacgg tatagatttt
     4921 tatctactta gttttggttt gctatgttag tgttttgttt ttttgttttt ttaaggttgt
     4981 gttctgatga ttttttttaa gagcctctcc cccccccccc caccttgatt tgaatcctgt
     5041 gttgactgca ggtatacagc tcaattaaaa aaaaaatcct aaggcggaga aattttattt
     5101 ataaacagag tcaaacagtt gcatgcctga ggctgtgagg tcagacacag gaatgagctg
     5161 cagtgccttt tttttttttt tttatttaac cgtcaaccac cccgcccccg cccccaccgc
     5221 tctgatttaa gcagcatgtc tgcactgtct gaggcacagt gccggtctac actatcatgg
     5281 gtgatgtttt attggtgctt ttctgttcat agtgttttct taaccagaaa acagtaggaa
     5341 gagacacaaa ccgtacacga cacaaacgat gctgctgacg gtttgttgtg tgtgtccccc
     5401 accccacccc ctccccacgt gcttttgagt ttcacctttt tatacacaaa cccagcaagc
     5461 caagtagctg ctggcgagtc ctgcctgcca agggctgctg tgtgcaccaa gctctcagcc
     5521 caggttgagc tgaaggtctc tttctggtac ccaggacgga tgggagctac agctgggccc
     5581 caacctccca ttcttctgag gcgacgctga gggaaaaacc agagtttctt ttgaggtgtc
     5641 gctgcctgcc ttttacagag tgggagtctt ctctgggcct tgcgttcttc tgtgcctctt
     5701 gtagctagcg aatgctggtg caaggtttgt agatctgtgc accccggacc tgggatgagg
     5761 gctgagctaa ggaggggagg aaagtggatt ctgtccggtg accttcctct ttagcccaga
     5821 gtgggggcta aaccaccctg cccagggtgc tcaggtgtgc ctatggtaaa cagaacctgt
     5881 agaagttgta cacagagcct tgatgctaat attggctttg tttttttttt tttttttttt
     5941 tttttttggt tctttttttc ggagctgggg accgaaccca gggccttgtg cttcctaggt
     6001 aagcgctcta ccactgagct aaatccccag cccggctttg tttttctgtt tgctttttct
     6061 tttttttttt ttgcaactca tcagagatgt ttgcaaagtg actttttttt taaattcctt
     6121 tatcttgact taaaggtgaa tgtgtatccc tctgggagga gcaagaagaa agcaggaatg
     6181 ttagtcatgg cgaacagaag acttcctccc ttattaatat ataaccctca catatttatg
     6241 cctaacgcaa gcggactttc aaaaggcgtc cttttgttgc atgccctgtg caggcatctg
     6301 tattgtacat gcatgacttt tgtcctgttt ccctgtataa agtcagtgaa caaagaaata
     6361 tttttgccta gttcatgttg ccaagcaatg catatttttt aaatttgtca tacatggaaa
     6421 gagcatgttt gttacatgta aaagctctac tgatgcagac acactaatgt ttgaacatgc
     6481 tgttcttcgc aagtgtacag ttttcaaatg ttgttaccag tgacaacgcc ctcgtggtct
     6541 aaacttgcta cagtgtattt attactcatt tcctcccaca gaattaagaa tcatggctat
     6601 atttcatatg gttatattga gagtgaaggg aaatgattaa tacaaggttt tgtaaca
//
