LOCUS       XM_006241549             883 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sterile alpha motif domain containing
            1 like 1 (Samd1l1), mRNA.
ACCESSION   XM_006241549
VERSION     XM_006241549.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006241549.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 4% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..883
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..883
                     /gene="Samd1l1"
                     /note="sterile alpha motif domain containing 1 like 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 mRNAs, 1 EST, and 96% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:102555439"
                     /db_xref="RGD:7744477"
     CDS             1..663
                     /gene="Samd1l1"
                     /codon_start=1
                     /product="atherin"
                     /protein_id="XP_006241611.1"
                     /db_xref="GeneID:102555439"
                     /db_xref="RGD:7744477"
                     /translation="MDVKENVAATLPPSASTSETRPAEAHARPPVSGAARGGGLARQN
                     PSRGAGKRPRLFAHVRGGWRPETRKPRAPPTRCADGLTLFRAEAGRVREGRGQQPRRD
                     RLLTAPPFPGPAQREVGPWLGRVRRSPAPPRPPPPRPQQPLPPPPLPSSALSSASSGA
                     VARVGPWRQTRVGGASAAGGISRGCRRRCFPFSPAVSAESAECVLRARNTHLLLKNPK
                     KI"
ORIGIN      
        1 atggatgtga aggagaacgt ggcagctacc ctgcctccct ccgcgtccac ctcggaaact
       61 cggccggcag aggctcacgc ccgcccaccc gtgtccggcg ccgctcgggg cggggggcta
      121 gcgaggcaga accccagccg cggcgccggg aagaggccgc gactattcgc gcacgtgagg
      181 ggcggttggc gcccagaaac ccggaagccc cgcgcgccgc ccacccgctg cgctgacggg
      241 ttaacgctct ttcgggcgga ggcggggcgt gtgcgcgagg ggcgtggcca gcagccgcgc
      301 cgggaccgcc tactaactgc cccgcccttt cctggccctg cgcagcggga agtcggcccc
      361 tggctggggc gcgtgcgcag aagccccgcc ccgcctcggc caccaccccc acgcccgcag
      421 cagccgctgc cgccgccacc tctcccttcc tctgcgcttt cctccgcctc ctccggcgcc
      481 gtcgctcgcg tagggccctg gcgtcagacg cgcgtgggcg gggcgagtgc ggcggggggt
      541 ataagtagag ggtgcaggag gcggtgcttc cccttctccc cggcggttag tgctgagagt
      601 gcggagtgtg tgctccgggc tcggaacaca catttattat taaaaaatcc aaaaaaaatc
      661 taaaaaatcc tttgaaaaaa cccaaaaaaa tttacaaaaa atccgcgtct cccccgccgg
      721 agactttatt tttttttctt cctcttttat aaaataaccc ggtgaagcag ccgagaccga
      781 cccgcccgcc cgcggccccg cagctccaag caggaaccca gagaccgagg ccttcctgcc
      841 gcccggaccc agcaccgcca gcctcgctcc cccggttcca cgg
//
