LOCUS       NM_001395624            3261 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus sterile alpha motif domain containing 15
            (Samd15), mRNA.
ACCESSION   NM_001395624 XM_006240398
VERSION     NM_001395624.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3261)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Jul 22, 2021 this sequence version replaced XM_006240398.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.36525.1,
                                           SRR26360181.1425870.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1724              JAXUCZ010000006.1  112572352-112574075
            1725-1823           JAXUCZ010000006.1  112574832-112574930
            1824-3261           JAXUCZ010000006.1  112585705-112587142
FEATURES             Location/Qualifiers
     source          1..3261
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q31"
     gene            1..3261
                     /gene="Samd15"
                     /note="sterile alpha motif domain containing 15"
                     /db_xref="GeneID:681908"
                     /db_xref="RGD:1589368"
     exon            1..1724
                     /gene="Samd15"
                     /inference="alignment:Splign:2.1.0"
     CDS             384..2108
                     /gene="Samd15"
                     /codon_start=1
                     /product="sterile alpha motif domain-containing protein
                     15"
                     /protein_id="NP_001382553.1"
                     /db_xref="GeneID:681908"
                     /db_xref="RGD:1589368"
                     /translation="MSVDEKNEVPDSSEPPDVSEDELKERPTETDPEQKTPDFRSEKP
                     RKSVDEEDLVPSKMTKSEKKRKESARKKSIEPYEVTKPEFPDRKLRKSKEEAETTEEF
                     QVKSTQQVGTEQDKFPDKKLKKSTKKRASEPLEEFNLQHFGEESRTLIDEASLELSEK
                     RTSKASKKAHKSSFDANFPGMLEEITLALLEEIKPDVEDESQDTSTKEKVPEPVGDKK
                     PITQKHRQRRPSGLPKLKGSLTEPSQEKEPVLQAHTEPEFTKEKLIKSMEKTDYEPPQ
                     TTDLDIPEKSELEQTIEKSLKLPSEPKPGEEGQFPKEDRPGPSKLKYPIGKDDLIFSE
                     YQKKLSEKKSTKSKNDYVVGSPRESVESAGSVYETQEFLRDLQDDMNELFTAVPDLEA
                     STELRDSLVFPQDVDILGGKESQINPSLRPQFEHLTWSPERVAEWISDLGYPQYKECF
                     TENFISGQKLIHVNCSNLPQMGITDFEDMKAISYHVRVLLGIEEPLFSRSICLPYRDN
                     IGLFLERKGHSGVKSDALTFSEFVEASGLQEYSAEVSGSQETSPEVKATDKSENSSLD
                     ESDIIIQI"
     exon            1725..1823
                     /gene="Samd15"
                     /inference="alignment:Splign:2.1.0"
     exon            1824..3261
                     /gene="Samd15"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcgagaggt gcgggggcgg ggaggttact acgtgctttt ggtcgcctgt ttggacggtc
       61 ggcacttgca aggatcgaca aaatctcggg aaatttcagg aaaacgccgc cggaaatcgt
      121 ggtatccata gagacgctgt cggaagttga ggttgctagg aggccttggc cgcatagact
      181 gacacggctg aagtcccaga agattatcat tctggccccg atgagagtct gaatctgcac
      241 cctaaaagaa ctaaatctgg taaattacag aatgctaaag cagacaccac gttagaggta
      301 agctctgagc tgtccccgaa tactgaccaa cacccaggaa tgtgctacta gagccaacca
      361 ggacacgcaa ggagaattcg gagatgtctg tagatgaaaa gaatgaggtg ccagactcct
      421 ctgaaccacc agacgtctct gaagatgaac tcaaagaacg gcctacagaa acagacccag
      481 aacagaagac accagatttt cgaagtgaaa aaccaagaaa atccgttgac gaggaagatc
      541 tagttccatc caagatgacc aaatccgaga agaaacgaaa agaatcagct aggaaaaaaa
      601 gtatagagcc atatgaggta actaaacctg agttcccaga ccggaagcta agaaagtcta
      661 aggaggaagc agaaactaca gaggagtttc aagtcaagtc tacacagcag gtgggcacag
      721 agcaggataa gttcccagac aagaaactaa aaaagtcaac taagaagaga gcctcagagc
      781 cactggagga attcaatctg cagcattttg gagaagaatc aagaacactg attgatgaag
      841 caagtctaga actatcagaa aagagaacat caaaggcttc aaagaaagca cacaaaagct
      901 cttttgatgc caattttcca gggatgctag aagagattac tctagcacta ctggaagaaa
      961 taaaaccaga tgttgaagac gagtcgcaag atacgtctac taaggagaaa gttccagagc
     1021 cagtagggga caagaaacca ataactcaaa agcacaggca gagaagacca agcgggctac
     1081 ctaaattaaa gggctcatta acagagccaa gtcaggagaa ggagcccgtg ctacaggcac
     1141 acaccgagcc agagtttaca aaggagaaac taataaagtc aatggagaaa actgattatg
     1201 agccaccaca gacaactgat ctagacattc cagagaagtc agagctggaa caaaccatcg
     1261 agaaaagtct caagttacca agtgaaccca aaccaggaga ggaaggacaa tttcccaagg
     1321 aagaccgtcc aggaccgagc aaactcaagt accctatagg caaggatgac ctgatattct
     1381 ctgaatatca aaaaaagttg tcagaaaaaa aatctaccaa gagtaaaaat gactatgtag
     1441 taggatctcc tagagagagt gtagaatccg ccggttcagt gtatgaaacc caagagttcc
     1501 tcagagactt gcaggatgac atgaatgagc tgtttacagc tgttcctgat ttagaggctt
     1561 caacagaact gagggattct ctagttttcc cccaggacgt agacatccta ggaggtaaag
     1621 aatcccagat caatccaagt cttagaccac aatttgagca ccttacctgg agcccagaaa
     1681 gggttgcaga gtggattagt gatctaggct accctcaata caaggagtgt tttactgaaa
     1741 acttcatcag tggtcaaaaa ctcatccacg ttaactgctc caacctgcca cagatgggga
     1801 taactgattt tgaagacatg aaggcaatat cctatcatgt ccgagtgctc ctgggaattg
     1861 aagagcctct cttcagccgc agcatctgcc ttccctacag ggacaatata ggcttattct
     1921 tagagcggaa agggcacagt ggggtaaagt ctgacgcctt gaccttctca gagtttgttg
     1981 aggcatcagg gttacaggag tatagtgcag aggtatcagg gtcacaggag accagtccag
     2041 aggtaaaagc cacggacaag agtgaaaact caagcctgga tgaaagtgac ataataatac
     2101 agatttaaac gcagtgacaa tagggacaac catgtcactt agctcgaaag atcaaactgg
     2161 ggctgaagag atggtttagc agttgagacc actcgctgct cttccagagg accagggttc
     2221 aattcccagc actgtcatgg cagctcacaa ctgtctaact ccagttccag gggatccagc
     2281 accctcacgc agatgaacac caatgcactt aaaataaaaa taattttttt taacaaaaag
     2341 aaagaaaaat caaagtacat tcccgtgggg tagaggtgtg gtttttgcca ggttttgttc
     2401 tctccttttc aggaagaatg agagaactgc tggctctagt ctttaattct tcccgacaca
     2461 tagcatcttc cctctgctaa aggtagcagt atttaccttc ctcgataact ttcagatctt
     2521 gtgttaaatt ctaacacacc taatactaag atttgttagg ggaattataa ttgaaaatgc
     2581 agtctcagca aggcatagta cgtaccttta ctcctagcac taagctgagg ctagtctgag
     2641 gtcatgataa gtctccaaga gccacataaa taaaatgttg ttaagtctct tggaaggagt
     2701 ctacaatgcc acttacaaga tggggtggga cttggtggca acgctgctga cctggggtta
     2761 cccacactca tgtgatccag gcctggtgac tcctgacctg tatcagataa gagcacatct
     2821 aagtctgatt gcagttagag gctggagagc caactcagca gttcagagtg ctgcctgctc
     2881 ctcctctgcc ctcttctagt gtccccgggt gtctgacaaa atgagcatgt gcacacagag
     2941 ccatgcagac aagcgtgcat gcacaatgca caggacttta ggaagtggag cttaaaacca
     3001 tcccaaaata tcaggcaatt tccatagtgt ttgtttgcct ccctggttta ctatctgacc
     3061 caaaggacag tgcagtggag ctcgggactg gaagagaaaa acatgaactg ggtaactagt
     3121 gacttcggtg aaagaacaaa ggcagcctga ggacagtgaa catgagcaga gcccaggaag
     3181 tgaggagaat gagtgtggga ctgtgagtgg attggaggcc ttccactacc tatgttggag
     3241 ctaataaaat atcatgggct g
//
