LOCUS       NM_001415981            3261 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus sterile alpha motif domain containing 11
            (Samd11), mRNA.
ACCESSION   NM_001415981 XM_039109111
VERSION     NM_001415981.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3261)
  AUTHORS   Inoue,T., Terada,K., Furukawa,A., Koike,C., Tamaki,Y., Araie,M. and
            Furukawa,T.
  TITLE     Cloning and characterization of mr-s, a novel SAM domain protein,
            predominantly expressed in retinal photoreceptor cells
  JOURNAL   BMC Dev Biol 6, 15 (2006)
   PUBMED   16539743
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3261)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jan 6, 2023 this sequence version replaced XM_039109111.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.25952.1,
                                           SRR26643296.16937.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-864               JAXUCZ010000005.1  172131064-172131927 c
            865-956             JAXUCZ010000005.1  172129979-172130070 c
            957-1138            JAXUCZ010000005.1  172126075-172126256 c
            1139-1189           JAXUCZ010000005.1  172125501-172125551 c
            1190-1314           JAXUCZ010000005.1  172121693-172121817 c
            1315-1401           JAXUCZ010000005.1  172118735-172118821 c
            1402-1536           JAXUCZ010000005.1  172118447-172118581 c
            1537-1699           JAXUCZ010000005.1  172116800-172116962 c
            1700-1815           JAXUCZ010000005.1  172115950-172116065 c
            1816-1894           JAXUCZ010000005.1  172115763-172115841 c
            1895-2406           JAXUCZ010000005.1  172115174-172115685 c
            2407-2528           JAXUCZ010000005.1  172114906-172115027 c
            2529-2639           JAXUCZ010000005.1  172114638-172114748 c
            2640-3261           JAXUCZ010000005.1  172113900-172114521 c
FEATURES             Location/Qualifiers
     source          1..3261
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..3261
                     /gene="Samd11"
                     /gene_synonym="RGD1310271"
                     /note="sterile alpha motif domain containing 11"
                     /db_xref="GeneID:102549710"
                     /db_xref="RGD:1310271"
     exon            1..864
                     /gene="Samd11"
                     /gene_synonym="RGD1310271"
                     /inference="alignment:Splign:2.1.0"
     CDS             348..2882
                     /gene="Samd11"
                     /gene_synonym="RGD1310271"
                     /codon_start=1
                     /product="sterile alpha motif domain-containing protein
                     11"
                     /protein_id="NP_001402910.1"
                     /db_xref="GeneID:102549710"
                     /db_xref="RGD:1310271"
                     /translation="MPAVKKELPGREDLALALATFHPTLASLPLPPLPAYLAPQPAAA
                     ALPSAASLPASASGYEALLAPSLCPPRAYLSLQEATPHLYLHRDPPAFQYFSASAAAA
                     PDFQPLIDNGEPCIEVECGDNRALLYVRKLCQGSKGPSIRHRGEWLTPNEFQFVSGRE
                     TAKDWKRSIRHKGKSLKTLMSKGILRVHPPICDCPGCRISSPVNRGRLADKRTVTLPP
                     THALKKERTPSFSASDGDSDGSGPACGQQLSLKQEDDPHFHIMKRRVHTHWDVNISFR
                     ETSCSQDNDLPTLISSVHRSRCLVMPEHPRHCDFQRGNVEIGLGPGGDLLGKRLSCPY
                     ITSDCSSEKKARSKAPQETLLLPELESTMAPEDHYHQLMSALSEAGPFEETQRLYHLG
                     IPSHDLLRVRQEVATATLRGPSSLEVHLPSSTAGHRRKQGLVQHREGTVPAATTSFSE
                     RELSQPPPLLPPQNAPHITMGSHLRPPFFGMPTALCQTPGYSFLPSAQAEMLARQQEL
                     LRKQSLARLEMSELLRQKELGSVHRPQLLAPEVALHIPEGPDELQRRGSMLVLKHGSA
                     PLLALPPQGPPGPGPPIPAKESARSRSQKGSLGAASAQPSEPKETTRAGLWAQDVSEE
                     PSKDSDGEDPEIAAARGGASTPSQVPAGGTRAEGKGLLSGSTLPPPLPLGFPCGAVSP
                     YFHTGTMGGLFTDEETTGPEDINKWTVDDVCNFVGGLSGCGEYARVFREQGIDGETLP
                     LLTEEHLLNTMGLKLGPALKIRAQVAKRLGRVFYMASFPVALPVQTPSLQAPVLSPGH
                     QPLSPATTTSPYEGTHLPTGQASPKQENGSGTIALLPGAPDPSQLL"
     exon            865..956
                     /gene="Samd11"
                     /gene_synonym="RGD1310271"
                     /inference="alignment:Splign:2.1.0"
     exon            957..1138
                     /gene="Samd11"
                     /gene_synonym="RGD1310271"
                     /inference="alignment:Splign:2.1.0"
     exon            1139..1189
                     /gene="Samd11"
                     /gene_synonym="RGD1310271"
                     /inference="alignment:Splign:2.1.0"
     exon            1190..1314
                     /gene="Samd11"
                     /gene_synonym="RGD1310271"
                     /inference="alignment:Splign:2.1.0"
     exon            1315..1401
                     /gene="Samd11"
                     /gene_synonym="RGD1310271"
                     /inference="alignment:Splign:2.1.0"
     exon            1402..1536
                     /gene="Samd11"
                     /gene_synonym="RGD1310271"
                     /inference="alignment:Splign:2.1.0"
     exon            1537..1699
                     /gene="Samd11"
                     /gene_synonym="RGD1310271"
                     /inference="alignment:Splign:2.1.0"
     exon            1700..1815
                     /gene="Samd11"
                     /gene_synonym="RGD1310271"
                     /inference="alignment:Splign:2.1.0"
     exon            1816..1894
                     /gene="Samd11"
                     /gene_synonym="RGD1310271"
                     /inference="alignment:Splign:2.1.0"
     exon            1895..2406
                     /gene="Samd11"
                     /gene_synonym="RGD1310271"
                     /inference="alignment:Splign:2.1.0"
     exon            2407..2528
                     /gene="Samd11"
                     /gene_synonym="RGD1310271"
                     /inference="alignment:Splign:2.1.0"
     exon            2529..2639
                     /gene="Samd11"
                     /gene_synonym="RGD1310271"
                     /inference="alignment:Splign:2.1.0"
     exon            2640..3261
                     /gene="Samd11"
                     /gene_synonym="RGD1310271"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cacgcgaatc tgcaacttct cactgcccgg ctcagcccgg gtccgaggca agggctggcc
       61 cggagcgcgg gcagtcggac ttcggacgct cggcagaaac cttggacccg agagcggcgg
      121 cccgagttct gaggcagttc caggagcacc gtgcctcagg cgggcgaagc caagtcgaac
      181 acccagaaac cgtccagcaa ggcggccgca tcagttgcga gcactgaggc tcagtagccg
      241 gccgagcgaa tgcatagcca agctccatcc atcaggcttt cccgaccaag acccaactcc
      301 aaccaaaata aattgagcaa ccaacagaaa acctccaccc gagtgccatg ccagcagtga
      361 aaaaagagct cccgggccgc gaggacctgg ccctggccct ggctaccttc cacccgaccc
      421 tagcctcact gccgctgccg ccgctgcccg cctacttggc gccacagccc gctgcggcag
      481 ccctgccctc cgccgcttcg ctgcccgcct cagcctcggg ctacgaggcg ctgttggccc
      541 cttcgctctg cccgccgcgc gcttacctaa gcctgcagga ggccacgcct catctctacc
      601 tgcaccgaga cccgccggcc ttccagtact tctcggccag cgcagctgcc gcgccggatt
      661 tccagccgct gatagacaat ggtgagccgt gtatcgaggt ggagtgcggt gacaaccgag
      721 cgctgctcta cgtgcgcaaa ctctgccagg gcagcaaggg cccgtccatc cgccacaggg
      781 gcgagtggct cacgcccaac gagttccagt tcgtcagtgg ccgcgagacg gccaaggact
      841 ggaagcgcag catccgccac aaagggaaaa gcctgaagac gcttatgtcc aaggggatcc
      901 tgcgagtgca ccccccgatc tgcgactgtc caggctgtag aatatcttcg cccgtgaacc
      961 gtggacgact ggctgataag agaacagtca ctttgccccc tacacatgcc ctaaagaaag
     1021 aaagaacacc cagtttctca gccagtgatg gtgacagtga tggaagtggc ccagcctgtg
     1081 ggcagcagct gagcctgaag caggaggatg atccccattt ccacatcatg aagagaagag
     1141 tccacaccca ctgggatgtg aatatttcct tcagagaaac atcctgcagc caggacaacg
     1201 acctccccac ccttatatcc agtgtacatc gaagccgctg cctcgttatg cctgagcatc
     1261 caagacactg tgacttccag agaggcaacg tggagattgg ccttggaccc ggaggtgacc
     1321 tgttgggcaa gaggctgagc tgcccctaca ttaccagtga ctgttcttca gagaagaagg
     1381 cccgaagcaa ggccccccaa gagactttgc tgctcccaga gctggagtcc acaatggccc
     1441 ctgaggacca ctaccatcag cttatgtcag ccctgagtga ggctggtccc tttgaggaaa
     1501 ctcaacgtct ctaccacttg ggcatcccta gccacgatct gctaagggta cggcaggaag
     1561 tggcaactgc aacactgagg ggtcccagta gtttggaagt acacctgccc tcatctacag
     1621 caggccatcg gcggaagcaa ggcctagttc aacaccggga gggaaccgtt ccagctgcta
     1681 ccacatcctt ctctgaaagg gagctgtcac agccaccccc tttgctgccg ccccagaatg
     1741 ccccccacat cacaatgggt tcccatctcc ggcctccttt ttttggaatg cccacagctc
     1801 tgtgtcagac cccaggttac agcttcctgc cctctgccca ggctgagatg ttagctcggc
     1861 aacaggagct cctacggaag cagagcttgg ctcggctgga gatgtctgag ttgcttaggc
     1921 agaaagaact gggcagtgtt caccggccac agctactggc gccagaggtg gccttgcata
     1981 tccctgaggg tcctgacgag ctccaacgac gtggctccat gctggttttg aaacatggct
     2041 cagcaccact actggccctg ccaccccagg gacccccagg cccaggaccc cctattccag
     2101 ccaaggagtc tgcccgaagc cggtcccaaa aggggagtct tggtgctgcc tcagctcagc
     2161 ccagcgagcc taaggagaca acaagggctg gcctctgggc tcaagatgtc tctgaggagc
     2221 catccaagga ctcagatgga gaggaccctg agatagcagc tgcccgggga ggggcctcta
     2281 ctcccagcca agtcccagca ggagggacca gagcagaagg aaaggggctt ctatcagggt
     2341 ccacattgcc ccctcctctg cccctgggat tcccctgtgg ggcagtcagc ccctacttcc
     2401 acacaggcac catgggggga ctcttcactg acgaggagac cacaggtcct gaggatatca
     2461 acaagtggac tgtagatgat gtctgcaact tcgtgggggg cctttctggc tgtggcgagt
     2521 atgccagggt attcagagaa caaggaatag atggagaaac tttgcctcta ctgacagaag
     2581 agcaccttct gaacaccatg ggactgaagc ttgggcctgc cctcaagatc agggcacaag
     2641 tggccaagcg cctgggccgt gtcttctaca tggccagctt ccctgtggcc ctgccagtgc
     2701 agacaccaag cctgcaagca cctgtgctca gcccaggaca tcaacctctg tccccagcaa
     2761 ccaccacctc cccatatgaa gggacccacc tgcccacagg ccaagcctca ccaaagcagg
     2821 agaatgggtc agggaccata gctctgctcc caggggcccc agatccttcc cagcttctct
     2881 aatgacctag caggcatcca tcatactccc taacacccag tcaaactgcc caccccaccc
     2941 caccccaccc ccagggtatt tccccttttt agatgcaaaa atgccaagag tatttttaaa
     3001 aggaaaacat atggcttaat aagaaagtaa tggattcacc ttctagggat aactgcagag
     3061 gtctgcagac aaaccaaaga caaagtggag aggccatgga gccaccctcc ccactctgaa
     3121 ctgggacaac tctgtaggtc agggtcagcc tcctgcttgg ggcagcagaa ggctctgcag
     3181 aaatagttct ctttcagggt cataatggct cttagaacac ttgttctgtt gtgctgtaac
     3241 aataaaaccc tgtttactgt c
//
