LOCUS       NM_001191967            1316 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus sterile alpha motif domain containing 10
            (Samd10), mRNA.
ACCESSION   NM_001191967 XM_575305
VERSION     NM_001191967.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1316)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1316)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jul 17, 2010 this sequence version replaced XM_575305.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.1338971.1,
                                           SRR26643429.15009.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840111 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-91                JAXUCZ010000003.1  189081836-189081926 c
            92-273              JAXUCZ010000003.1  189080317-189080498 c
            274-445             JAXUCZ010000003.1  189080060-189080231 c
            446-586             JAXUCZ010000003.1  189079400-189079540 c
            587-1316            JAXUCZ010000003.1  189078513-189079242 c
FEATURES             Location/Qualifiers
     source          1..1316
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q43"
     gene            1..1316
                     /gene="Samd10"
                     /gene_synonym="RGD1563203"
                     /note="sterile alpha motif domain containing 10"
                     /db_xref="GeneID:499957"
                     /db_xref="RGD:1563203"
     CDS             1..609
                     /gene="Samd10"
                     /gene_synonym="RGD1563203"
                     /codon_start=1
                     /product="sterile alpha motif domain-containing protein
                     10"
                     /protein_id="NP_001178896.1"
                     /db_xref="GeneID:499957"
                     /db_xref="RGD:1563203"
                     /translation="MFTELRSKLSPPRARAGAVRTGFGERPDVDASAHFSFCQTLLEH
                     TVSAENIPCHLPRTPGTSLTWHDSRSQRASSSRPIKLLQQPGSETPQARLYSDHYGLY
                     HTSPSLGGLTRPVVLWSQQDVCKWLKKHCPHNYLVYVEAFSQHAITGRALLRLNADKL
                     QRMGLTQEAQRQEVLQQVLHLQVREEGRSLQLLSQASFGNMS"
     exon            1..91
                     /gene="Samd10"
                     /gene_synonym="RGD1563203"
                     /inference="alignment:Splign:2.1.0"
     exon            92..273
                     /gene="Samd10"
                     /gene_synonym="RGD1563203"
                     /inference="alignment:Splign:2.1.0"
     exon            274..445
                     /gene="Samd10"
                     /gene_synonym="RGD1563203"
                     /inference="alignment:Splign:2.1.0"
     exon            446..586
                     /gene="Samd10"
                     /gene_synonym="RGD1563203"
                     /inference="alignment:Splign:2.1.0"
     exon            587..1316
                     /gene="Samd10"
                     /gene_synonym="RGD1563203"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgttcaccg agctgcggtc aaagctgagc cccccgcgag ctcgcgccgg ggctgtgcgt
       61 acaggcttcg gggagcgccc ggatgtggac gcctctgccc atttcagctt ctgccagacc
      121 ctcctagagc atacagtgtc agctgagaac ataccctgcc acctgcctcg gacaccaggc
      181 accagcctca catggcacga ctcccgaagc cagagggcat ccagcagcag gccaatcaag
      241 ctccttcaac agccgggctc agagaccccc caggcccggc tgtactctga tcactatggt
      301 ttgtaccaca cgagcccttc gctgggtggc ctgacaaggc cagtggtctt gtggagtcag
      361 caggacgttt gcaagtggct caagaaacat tgtcctcaca actacctcgt ctacgtcgag
      421 gccttctccc agcatgccat cacgggccga gctctgcttc gactgaacgc agacaagctg
      481 cagagaatgg ggttgaccca agaggctcag aggcaggagg tgctgcagca ggtgctccac
      541 ctgcaggtgc gtgaggaggg gcggagcctg cagctgctca gccaagcttc cttcggaaac
      601 atgtcctagc tgttgcctat acttggaccc cagaccccaa cactgtgacc agagcccaca
      661 gccaagaatg agtcagaact ggccctacag cccctttgga tcctgcagga taccctagcg
      721 gctaaaccta gcccaggggt cagggaggag caagacctcc atctccaggt gcctctggag
      781 aggcactaca ggttctgccc tgcggctggg tgggtggttg ctgcctgctt atagaccctt
      841 cttctgagat ccaagcccag gtccatcccc tggtgctgct ggcagcaaac agggtagctg
      901 cctggaacta gagtggggtt tgaatgtccc cagactccca gggagtctgt ttatttatgt
      961 tccctccaac atgtgaccat cccccatctg agtcatgagt cttaccctta agtcttagtt
     1021 ctgtgtcttt cccaggcacc tccagatcag ccacacagtg ggacaagctg tcttggctct
     1081 ttgaagtgta tctgtcccag agtacagcag gcccaacctg ctgtccatac taatagtcat
     1141 caattcatga catcatgcca tgcttcactc agtgattgtg aaacgtcagc agaccctatc
     1201 cacactgtag acgtgaattt gagaggggtc caggatgctc aggctggaaa gccagtgtgc
     1261 ggcacagatc ccagtggtgt gcaggtaact gtgcacagct caccagttca gatccc
//
