LOCUS       XM_003749632            4021 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus spalt-like transcription factor 4
            (Sall4), mRNA.
ACCESSION   XM_003749632
VERSION     XM_003749632.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 26, 2024 this sequence was replaced by
            NM_001427495.1.
            
            On Jan 21, 2021 this sequence version replaced XM_003749632.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4021
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4021
                     /gene="Sall4"
                     /note="spalt-like transcription factor 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 11 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     4 samples with support for all annotated introns"
                     /db_xref="GeneID:686412"
                     /db_xref="RGD:1597672"
     CDS             234..3446
                     /gene="Sall4"
                     /codon_start=1
                     /product="sal-like protein 4"
                     /protein_id="XP_003749680.1"
                     /db_xref="GeneID:686412"
                     /db_xref="RGD:1597672"
                     /translation="MSRRKQAKPQHINSEEGQGEQPLQQPSPGLAEAPAAEEPGVPVN
                     SSGNGDEASEDPAPAPVKRSRREDTHICNKCCAEFFSLSEFMEHKKSCTKNPPVLIMN
                     DSEGAVPPEDFSRAVLGSPSNKDGLQENGGSSSGDLKENLGTDSILYLKTEATQPPAP
                     QDISYLPKGKVANTNVTLQALRGTKVAVNQRSTDVPAAPVPAALSIPWILEQILCLQQ
                     QQLQQIQLTEQIRVQVNMWAAHALHSGVAGADTLKALSNHVSQQVSVSQQVSAAVALL
                     SQKASNPTLSLDALKQAKLPHAAVPSTASSLSSGFTPFALKPDGTRVLPNFMSRLPNA
                     LLPQTPGSVLLQSPFSTVTLDQSKKGKGKPQNLSASMLDAKTKDEVVLGKHKCRYCSK
                     VFGTDSSLQIHLRSHTGERPYVCPVCGHRFTTKGNLKVHFHRHPQVKANPQLFATEFQ
                     DKGASSTSPHYALPVPIPVDESSLSVDTEPVPVTGTPSIGLPQKLTSGPNPKDLMGGS
                     LPNDIQPGPSPESEVGLPLLGAGMMRNPPRAGGFQGTGAPESGSETLKLQQLVENIDK
                     ATTDPNECLICHRVLSCQSSLKMHYRTHTGERPFQCKICGRAFSTKGNLKTHLGVHRT
                     NMAVKTQHSCPICQKKFTNAVMLQQHIRMHMGGQIPNTPLPESPCDFTVPEPMAVSEN
                     GGGSGVCQEDAVEGMEAEEACIQDVPGGPSTVSAPLPGTHLASPSLGFPVMAPLDAQG
                     RGALPALALQRQSSRESGSLEAGDSCLTNDSSSLMGDQECPSRSPDATETMCYQAVSP
                     ANSQAGSVKSRSPDGHKAEGVESCRVDTEGRTSLPSTFIRAQPTFVKVEVPGSFVGPP
                     SVPSGMTPLLASQQPPRRQAKQHSCTRCGKNFSSASALQIHERTHTGEKPFVCNICAR
                     AFTTKGNLKVHYMTHGTNNNSARRGRKLAIENTMAALGAEGKRAPEVFPKELLSPTVS
                     VDPATWNQYTSVLNGGLAMKTNEISVIQSGGIPTLPVSLGASSVVSNPTLSKLDGSQT
                     GGSGAMSGAMSGNLEKPGVPDGVAKHQFPHFLEENKIAVS"
ORIGIN      
        1 atgcctctcc cctccctgat caatgagggc ttatttaaat gatctctgag gtcttggacc
       61 caggccaatc agctgtcaga gctcatgata aatcgcaatg cattattgat aataataatt
      121 actgggacat gcgcgttcct gccgaagggg ggtaaaattt cctaactcca ggaattggtg
      181 gcggagaagg gccaagtcac cagggctctt cccggcgccc cgatgcgcgc accatgtcga
      241 ggcgcaagca ggcgaagccc cagcacatca actcggagga gggccagggc gagcagccgc
      301 tgcagcaacc gagccctggc ctcgcagagg cgccggcggc ggaggaaccc ggtgttccag
      361 tgaattcctc agggaacgga gatgaagcct cggaggaccc cgcccccgcc ccggtgaagc
      421 ggtcccgacg ggaggatact cacatctgta acaagtgctg tgcggagttc ttcagtctct
      481 ctgagttcat ggaacacaag aaaagttgca ctaagaaccc tcctgtcctc atcatgaatg
      541 acagcgaggg ggctgtgcct ccagaggact tttccagagc tgtcctgggc agcccaagca
      601 ataaagatgg tctccaggag aatggcggca gcagctcggg ggacttgaag gagaacctag
      661 gcacggactc catcctgtac ttgaagacag aggcgaccca gccacccgca ccccaggaca
      721 taagctattt gcccaaaggc aaagtagcca acaccaatgt gactctgcaa gcgctccgtg
      781 gcaccaaggt ggcagtgaac cagcggagca ccgatgtccc cgcggccccc gtgcctgccg
      841 ctctcagcat cccttggatc ctggagcaga tcttgtgcct gcagcagcag cagctccagc
      901 agatccagct aacggaacag atcagagtcc aggtgaacat gtgggccgcg catgccctcc
      961 actctggcgt ggcaggcgcg gacactctca aggccttaag caaccacgtg tctcagcagg
     1021 tctctgtctc ccagcaggtg tctgctgctg tggccctgct tagccagaaa gcctccaacc
     1081 caactctgtc tctagatgcc ttgaaacaag ccaagctacc tcatgccgct gtcccctcca
     1141 cggccagctc attgtcctcg gggttcacac ccttcgcctt gaagccggac gggactcgag
     1201 ttctccccaa cttcatgtcc cgcctcccga atgccctgct acctcagacc ccgggctctg
     1261 tgctcctgca gagtcccttc tctactgtga cactggacca gtccaagaaa ggaaagggga
     1321 aaccccaaaa cctctccgcc tccatgttag atgccaagac caaggacgag gttgtcctcg
     1381 gtaagcacaa gtgtaggtac tgtagtaagg ttttcgggac cgatagctcc cttcagattc
     1441 atcttcgctc ccacaccgga gagagacctt acgtgtgccc tgtctgtggt caccgcttca
     1501 ccaccaaggg caacctcaag gtccacttcc atcgacaccc tcaggtgaag gcgaaccccc
     1561 agctgtttgc cactgaattc caggacaaag gggcatcaag caccagtcct cactatgcac
     1621 tccctgtccc catccctgta gacgagtcaa gtctctctgt agacactgag cctgtcccgg
     1681 tcacgggaac cccttccata gggctacctc agaagctcac ttcagggcct aaccccaagg
     1741 acctcatggg cggctccttg cccaacgaca tacagccagg gccttctcca gaaagcgagg
     1801 tgggccttcc actcctcggg gcggggatga tgcgtaatcc cccaagggct gggggcttcc
     1861 agggcactgg agccccagag tcagggtcag agaccctgaa gttacagcag ctagtggaga
     1921 acatagacaa ggccaccacc gaccccaacg agtgtctcat ttgtcatcgg gtcctcagct
     1981 gtcagagttc ccttaagatg cattaccgta cccacacagg agagagacca ttccaatgca
     2041 agatctgtgg ccgggccttc tccaccaaag gcaacctgaa gacacatctt ggggttcacc
     2101 gaacaaacat ggccgtaaag acccagcatt cgtgccccat ctgccagaag aagttcacca
     2161 atgccgtcat gttacagcag catatccgga tgcacatggg tggccagatc cccaacacgc
     2221 ctctgcccga gagtccctgc gacttcacag ttcccgagcc catggccgtc agtgagaacg
     2281 gcggtggcag cggtgtctgc caggaagacg cggtagaagg gatggaagcg gaggaggctt
     2341 gtatccagga tgttcccggt ggcccctcga cggtctccgc gccgctcccc ggaacccatc
     2401 tggcgtcgcc ctccctgggc tttccggtga tggctcccct ggatgctcag gggagagggg
     2461 ctcttcctgc tttggccttg caacggcaga gcagtcgaga aagcggctct ctggaggccg
     2521 gtgacagttg cctgaccaat gactcttcct cgctcatggg tgaccaggag tgtccgagcc
     2581 ggagcccaga tgccacggag accatgtgct accaggcagt gtcccctgcc aatagccaag
     2641 ctggaagtgt caagtcccgg tctcccgacg gtcacaaggc cgagggtgtc gagagctgcc
     2701 gcgtggacac cgaaggccgt accagcctcc cctcgacatt tatccgagca cagcccacct
     2761 ttgtcaaagt tgaagtacct ggctcctttg tgggaccccc gagcgtgccc tcaggcatga
     2821 cgcctctgct agcttcccag cagccgccgc gccgccaggc caagcaacac tcttgcaccc
     2881 ggtgcgggaa gaacttctcg tccgccagtg ccctgcagat ccacgagcga acgcacacgg
     2941 gagaaaagcc tttcgtgtgt aacatatgtg ctcgggcctt caccacgaaa ggcaacctga
     3001 aggtacacta catgactcat gggaccaaca ataactccgc ccgccgaggc aggaagctgg
     3061 ccatagagaa taccatggcc gccctgggtg ctgagggaaa gagagcacct gaggtgtttc
     3121 ccaaggagct cctgtccccc acggtgagtg tggaccctgc cacgtggaac cagtacacca
     3181 gtgtcctcaa tgggggtctg gccatgaaga ccaatgagat ctctgtgatc cagagtggag
     3241 ggatccccac cctgcctgtg tctctggggg ccagctccgt ggtgagcaac cccacgcttt
     3301 ctaagctgga tggctcccag accggcggga gcggggccat gagtggggcc atgagcggga
     3361 acctagagaa gcctggcgtt cccgatgggg tggccaaaca ccagtttcct cattttctgg
     3421 aggaaaataa gatcgcagtc agctaaggag gaagaggagg aggctgccgg agtgagattc
     3481 tagagtcttc ttcattgttc agtttcctta acagcccatc tccctttctc cctactcttc
     3541 ctgatatgca agtgatgtgg cttgtgacca tacccttggg caatcctaca atcacgttat
     3601 gctgctttcc aaaaaaaaga atgaaaacaa aatggagaaa aagtgaaaaa cagaaaaaca
     3661 acaaaaacca agccaaaaaa acaaaaaaca acaaaaaaaa aacctaaaaa aaacaaaaaa
     3721 caaaccactt ttttttttaa aacattttgg aaagaatctg gttttgaaaa atagttttgt
     3781 taacttggga cgagttgtat actagaagct ttgtgtgacc tcatggctgt ttccaaagac
     3841 tgtcgcctgt ttcaaagtga aacagttggg actcattgga ccacagtgga agtgacaact
     3901 ttctaaccca gtcctggggg tgagggtgct gtgtccttct gtggtgacta atgcgggtaa
     3961 atgtggggac ctggttttat gcctcccgag cctgtcttca gaaatcttgt tttttttttt
     4021 t
//
