LOCUS       NM_001108892            6921 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus spalt-like transcription factor 3 (Sall3),
            transcript variant 1, mRNA.
ACCESSION   NM_001108892 XM_001058670 XM_006254985 XM_344708
VERSION     NM_001108892.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6921)
  AUTHORS   Kawakami,Y., Uchiyama,Y., Rodriguez Esteban,C., Inenaga,T.,
            Koyano-Nakagawa,N., Kawakami,H., Marti,M., Kmita,M.,
            Monaghan-Nichols,P., Nishinakamura,R. and Izpisua Belmonte,J.C.
  TITLE     Sall genes regulate region-specific morphogenesis in the mouse limb
            by modulating Hox activities
  JOURNAL   Development 136 (4), 585-594 (2009)
   PUBMED   19168674
REFERENCE   2  (bases 1 to 6921)
  AUTHORS   Harrison,S.J., Parrish,M. and Monaghan,A.P.
  TITLE     Sall3 is required for the terminal maturation of olfactory
            glomerular interneurons
  JOURNAL   J Comp Neurol 507 (5), 1780-1794 (2008)
   PUBMED   18260139
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On or before Dec 23, 2022 this sequence version replaced
            XM_006254985.4, NM_001108892.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMN12840106, SAMN12840111
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-567               JAXUCZ010000018.1  76700339-76700905   c
            568-4022            JAXUCZ010000018.1  76685283-76688737   c
            4023-6921           JAXUCZ010000018.1  76681005-76683903   c
FEATURES             Location/Qualifiers
     source          1..6921
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18q12.3"
     gene            1..6921
                     /gene="Sall3"
                     /note="spalt-like transcription factor 3"
                     /db_xref="GeneID:364910"
                     /db_xref="RGD:1310232"
     exon            1..567
                     /gene="Sall3"
                     /inference="alignment:Splign:2.1.0"
     CDS             486..4454
                     /gene="Sall3"
                     /note="isoform 1 is encoded by transcript variant 1;
                     sal-like protein 3; sal-like 3"
                     /codon_start=1
                     /product="sal-like protein 3 isoform 1"
                     /protein_id="NP_001102362.2"
                     /db_xref="GeneID:364910"
                     /db_xref="RGD:1310232"
                     /translation="MSRRKQAKPQHLKSDEELPPQDGASEHGVPGDGAEDADSSSESR
                     SGSEETSVCEKCCAEFFKWADFLQHKKTCTKNPLVLIVHDDEPAPPSEDFPEPSPASS
                     PSDRTESEVAEEVAPPEGSEVKAVAKEVEPMDVEASADQGPPGPSVPPPPPALPPQPE
                     PAAFSMPSTNVTLETLLSTKVAVAQFSQGARAGGTTGAGGSVGAVAIPMILEQLVALQ
                     QQQIHQLQLIEQIRSQVALMSRQPGPPLKPSASAPGAASVQLPGLTPHASLQLSAGPA
                     TASAGSGSTLSAAFDGPQHLSQPQPASGTSTPCSTSAGPTDSGAHPACSTGPAPGAVA
                     AASSTVGNTVQPQNASTPPALGPGPLLSSASSLPSPLLPQTSSSSVIFPNPLVSIAAT
                     ANALDPLSALMKHRKGKPPNVSVFEPKASAEDPFFKHKCRFCAKVFGSDSALQIHLRS
                     HTGERPFKCNICGNRFSTKGNLKVHFQRHKEKYPHIQMNPYPVPEYLDNVPTCSGIPY
                     GMSLPPEKPVTTWLDSKPVLPTVPTSVGLQLPPTVPGTHNYTDSPSITPISRSPQRPS
                     PASSECTSLSPGLNNTESGITVRPESPQPLLGGPPLTKAEPVSLPCTSTRTGDAPVVG
                     GQVSGLPTPAATTVTDSACTSLGSPGLPAVSDQFKAQFPFGGLLDSMQTSETSKLQQL
                     VENIDKKMTDPNQCVICHRVLSCQSALKMHYRTHTGERPFKCKICGRAFTTKGNLKTH
                     FGVHRAKPPLRVQHSCPICQKKFTNAVVLQQHIRMHMGGQIPNTPLPEGLQEAMDAEL
                     PFDEKNAETLSSFDDDVDENSMEEDSELKDTASDSSKPLLSYSGSCPPSPPSVISSIA
                     ALENQMKMIDSVMNCQQLASLKSVENGSGESDRLSNDSSSAVGDLESRSAGSPALSES
                     SSSQALSPAHSNGESFRSKSPGLSHQEDPQEIPLKTERLDSPPPGPGNGGALDLTAGH
                     PGRPLIKEEAPFSLLFLSRERGKCASTVCGVCGKPFACKSALEIHYRSHTKERPFVCT
                     VCRRGCSTMGNLKQHLLTHKLKELPSQVFDPNFTLGPSHSTPSLASSPAPTMIKMEVN
                     GHSKAIALGEGPALPAGVQVPTGPQTVMSPGLAPMLAPPPRRTPKQHNCQSCGKTFSS
                     ASALQIHERTHTGEKPFGCTICGRAFTTKGNLKVHMGTHMWNNAPARRGRRLSVENPM
                     ALLGGDALKFSEMFQKDLAARAMNVDPSFWNQYAAAITNGLAMKNNEISVIQNGGIPQ
                     LPVSLGGGAIPPLGAMAGGVDKTRTGSSPPIVSLDKASPETGASRPFTRFIEDNKEIG
                     IN"
     exon            568..4022
                     /gene="Sall3"
                     /inference="alignment:Splign:2.1.0"
     exon            4023..6921
                     /gene="Sall3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggagacggcg ccgcgcggac gccaccaaag ttttcagctt gagcggcacg gaggggccgc
       61 cgccacggcc cgcgccacac cccggcccgc cggagccgca cctgggcgac ggaggagcgt
      121 agcgcctgag ctcgggcgag cggtggaacc cgcgatgtga gcggcgtggg gcggcgcgca
      181 ccccggtccg caggcgccgc ggcccctcct cgccagcgcg gccgctaatt gcgagagcgg
      241 cctcatttgc ataggccgcc ggagtccgct ggaggccggc caatcggcgc ggccctccgc
      301 taatggccat gcattattca ccagcctaat tgctcagccc catgcgcggc ccgcgcagcc
      361 gccgccaccg ccccgcgccc cgctccccgc gcccgcccgg ccgccccgcg cccaccccgc
      421 gctgtccccg ccggccaccc cgctgatgcc gctgccccgc acggggccgg agcgccgcta
      481 gcagcatgtc tcggcgcaag caggccaagc cccagcacct caagtcggac gaggagctac
      541 cgccgcagga cggggcttcg gagcacggcg tcccggggga cggtgcagag gacgccgaca
      601 gcagcagtga gagcaggagc ggcagcgagg aaaccagcgt gtgtgagaag tgctgtgcgg
      661 agttcttcaa gtgggcggac ttcctgcagc acaagaagac ctgcaccaag aacccactgg
      721 tgctgatcgt gcatgatgat gagccggcgc cgccctccga ggactttcca gaaccttctc
      781 ctgccagctc gcccagtgac cgcactgaga gtgaggtggc tgaggaggtg gcgcccccag
      841 agggcagcga ggtgaaggct gttgcaaagg aagtggagcc catggatgtg gaggcttctg
      901 cggaccaggg ccctccaggc ccaagtgtgc ccccaccgcc acctgcactg ccaccacagc
      961 cagagcctgc ggccttcagc atgcctagta ccaatgtgac cctggagacg ctgctgagca
     1021 ccaaggtggc cgtggcacag ttctcacagg gtgcgcgtgc aggcggcacc acaggcgctg
     1081 gtggcagcgt gggtgctgtg gccatcccca tgatcctaga gcagctggtg gcactgcagc
     1141 agcagcagat ccaccagctt cagctcatcg agcagatccg cagccaggtg gccctaatga
     1201 gccggcagcc tgggcctccg ctgaagccct cagccagtgc ccctggagca gcctcagtac
     1261 agcttccggg cctgactccg catgcgtccc tccagctttc cgctggacca gccactgcct
     1321 ctgctggctc aggctccacc ctgtcggcag ccttcgatgg cccccagcac ctgtcgcagc
     1381 cgcagcccgc ttccggcaca agcaccccct gtagcactag tgctggcccc acagattctg
     1441 gggcacaccc agcctgtagc actggcccag ctccaggagc tgtggccgca gcatccagca
     1501 ctgtaggtaa cacggtgcag ccccaaaatg catctacgcc ccctgccctg ggtcccggac
     1561 ccctcctcag ctcagcctcc agtctgccaa gccctctgct acctcagact tcatccagca
     1621 gtgtcatctt ccccaacccg ctggttagca ttgctgccac agccaatgcc ctggaccccc
     1681 tctcggctct tatgaagcac cgcaagggca agccccctaa cgtttcagtg ttcgaaccca
     1741 aggccagtgc tgaggaccct ttctttaagc acaagtgcag gttctgtgcc aaggtcttcg
     1801 gcagtgacag cgcgttgcag atccacctgc gatcccacac aggggaacgg cccttcaaat
     1861 gtaacatctg cgggaaccgc ttttccacca agggcaacct gaaggtccac ttccagaggc
     1921 acaaggagaa gtacccccac attcagatga acccctaccc tgtcccagaa tacctcgaca
     1981 atgtgcccac ctgctctggg attccctacg gcatgtccct acccccagaa aagccggtga
     2041 ccacctggct ggacagcaag ccagtgctgc ccactgtacc aacatcagta gggcttcagc
     2101 tgccccctac tgtccctggc acccacaatt acactgactc ccctagcatc actcctatta
     2161 gccggtcccc acagaggccc tctccagcat ccagtgaatg cacctctctg tctccaggcc
     2221 tcaacaatac agaatctggt atcacagtga ggcctgagtc accccagcca ctgctgggtg
     2281 ggcctccgct tactaaagct gagccagtca gcctgccttg cacgagtaca aggacaggag
     2341 acgctccagt ggtgggtggg caggtcagcg ggttgcccac tccggctgcc accactgtca
     2401 cagacagcgc ctgcacaagc ctcgggagcc ccggtcttcc agctgtctcc gaccagttca
     2461 aggcccagtt tcctttcgga gggctgcttg actctatgca aacgtcagag acctcgaaac
     2521 tgcagcagct ggtggagaac atcgacaaga agatgactga cccgaaccag tgtgtcatct
     2581 gccaccgcgt gctgagctgc cagagcgcac tgaagatgca ctacaggacg cacacagggg
     2641 aacggccctt caagtgtaag atctgtggcc gcgccttcac caccaaaggc aacctgaaga
     2701 ctcacttcgg ggtgcaccgt gccaagcccc cgctccgagt gcagcattcc tgccccatct
     2761 gccagaagaa gttcacaaac gctgtggtgt tgcaacagca catccgtatg cacatggggg
     2821 gacagatccc gaacacgcca ctgcctgagg gcctgcagga ggccatggat gccgaactgc
     2881 cctttgatga gaagaatgca gagaccctca gcagctttga cgacgatgtc gacgagaact
     2941 ccatggagga ggactcagag ctgaaggaca cagccagcga ctcctccaaa ccgctcttgt
     3001 cttactcggg ctcctgtcca ccctcacccc cgtcggtcat ctccagcatc gccgccctgg
     3061 agaatcagat gaaaatgatc gactcggtca tgaactgcca gcaactggcc agcctgaagt
     3121 cggtggaaaa tgggtctggg gaaagcgacc gcttgagcaa cgactcctcc tctgcagtgg
     3181 gagacctgga gagccgcagc gcaggcagcc ctgccctgtc tgagtcctcg tcctcccagg
     3241 ctctgtcacc tgctcacagt aatggtgaga gcttccgttc caagtcgcca gggcttagcc
     3301 accaggagga tccgcaggag atcccactga agactgaaag actggacagc ccaccccccg
     3361 gcccaggaaa tggaggtgcc ctggacctga cagcgggcca ccctggtcgg ccactcatca
     3421 aggaggaggc ccctttcagc ctgctgttcc tgagcagaga acggggtaag tgtgcgagca
     3481 ctgtgtgtgg tgtctgtggc aagccctttg cttgcaaaag tgcgttggaa atccactacc
     3541 gcagccatac caaggagcgg ccgtttgtct gcacagtctg caggcgaggc tgctccacta
     3601 tgggtaactt aaagcagcac ttactgacac acaagttgaa agagctgcct tctcaggtgt
     3661 ttgaccccaa ctttactcta ggtcccagcc acagcacgcc tagcctggcc tccagccctg
     3721 cgcccaccat gatcaaaatg gaagtaaacg gtcacagcaa ggccatcgca ctgggtgagg
     3781 gcccagccct accagccggg gtccaggtac ctactgggcc ccagacagtg atgagccctg
     3841 gcctggcgcc catgctggca cccccgccac gccggacacc caagcagcac aactgtcagt
     3901 catgtgggaa gaccttctcc tcagccagtg ccctgcagat ccatgagcgc acccacactg
     3961 gggagaagcc cttcggctgc accatctgtg gcagggcctt cactaccaag ggcaatctca
     4021 aggtacacat gggcacccac atgtggaaca acgcgcctgc gaggcgtggc cgccgtctgt
     4081 ctgtggaaaa ccccatggcc ctgctgggtg gcgacgctct caagttctct gaaatgttcc
     4141 agaaggacct ggcggctcgg gcgatgaatg tcgaccccag cttttggaac cagtatgccg
     4201 ctgccatcac caatgggctc gccatgaaga acaatgagat ctcagtcatt cagaatggag
     4261 gcatccctca gctcccagta agtctaggcg gaggtgccat cccgcctctg ggtgccatgg
     4321 ctggtggggt ggacaagacg cgcactggca gtagtccacc tatcgtcagc ttggacaaag
     4381 caagcccgga gacgggagcc agccggccgt tcacaaggtt cattgaggat aacaaggaga
     4441 ttggaataaa ctagcaggac acacataaga ctccaccctc ctcttctgtc ccgagtccac
     4501 tctgcagact tggagcttca ggctttggac cccacatgcc taggctctcg ttcacacttt
     4561 acccacgaca gaaaatccct gtaccatgtg gctgctgtaa ggcggcctgg agagtgaggc
     4621 acagtactgc agtgggtttg actgttctta agaactctgc aaccgtttaa gtaaatttca
     4681 cacaagagct tatgtgcttg aaaaaaaaat ggccttagga acagaaagag ctcagaccat
     4741 atctacttca tttctcctaa aacctagtga cccccctctg tgtgggggaa cggggtcccc
     4801 tgcggttacc ccatgagctg cattcaatgg tttcgttcaa actctgtaga cacttgaact
     4861 ctgttttagg gactcttcgt cttgaagaag cagtttagtg ctccaaacgc cgtgtataat
     4921 gacagtctct tcgtctatag tatttatgtt aagattatgc gggtaacaga caagaaaata
     4981 gcccaaccct aaatgacgat tttgtatcac agaatacatc tggctatgtg attttttttt
     5041 ttaaagagca agatttgctt cattataaat aagtggatta attcaatgca ggcaaaatcg
     5101 tgacgttcta ttgggaaaga tagcatgctt ttttgtgtgc aagtacctgt cagtaacacc
     5161 ccctccccct ttaatttaaa cgtttgtagc tgctatgtga acgattgttc tctagtgtgg
     5221 tctgtagccc ctcggccgat cgggagcagg ttacagacaa gcatcaccgt gaaatgattc
     5281 acagcttcat aggcagtcgt gtgagtaaat atttcacatt atcaaagctg tatgataaag
     5341 aggtaatgtt tgtatcacgt ggttgcaaat cttaatttat acaattgcac ttttagaatt
     5401 ttgtattagg gaagtttgtc tataatttga aaatttaaaa aaaaagatgt aaagtatttt
     5461 ataaatagta cttcggttta aagaaaatgg aggggggaaa aaaacccatg tcacagttta
     5521 ttggtttttt tttttctctt aaaagtcaaa catgagaagt ctatgctgtt taagcagaaa
     5581 aaaaaaaaaa aaaaaaaaga agccaccggg atttgtcagc acctcaataa aataaggtct
     5641 gccgtttctt aaattaacat gatttattta acttctctac agaacctctt gagaaactgt
     5701 gagcaccata acaaaacttt gacaaatcat gctcagtccc ctgaccccag gaaggcaggg
     5761 ggacagcgag gtgcgcattg cgcaagcgcg atcttactgt aggctccccc ctctgtctct
     5821 ctcatacaca atacggggct gcctcgtagc attggtcagg gcgcggatga gactgggata
     5881 ccgagtgtct ggcagtataa tccgtcataa ccttgacatt tcctaagtcc gtgattcatt
     5941 gtcttctcga gtgcaaacac ggtgtgtcgt cccgattatt cgaaccccga tctcttttgc
     6001 tgacgacctg tataaactgc atccattgag caaagaagcc agatgctggg aggcggggct
     6061 gactggaaac ttgaacgtca gtgttgtgtg tactacctca tttttgtgca ctgcaagcat
     6121 gctgggaagt gacgcgatgg actcccaaca aaaatcgctc aagacatact gtaggtagct
     6181 gggtacctca gcagggagct gtctgcgcct gaaggctaaa ccagacagtg tgaaacagaa
     6241 ggatagagca gtcacctcaa actgaaccga ccggggaaag cgtcgcaggc gaatggctac
     6301 cactggcctg tgtccgagca gagagcttct gggctcgtta gctgttcctg tctgtggaaa
     6361 tgaacactga cctctctggc tctgttttcc atgtagtgag gtggagcatc ttcaggccgt
     6421 cccctctctc gctgggggat gggagcaggc gcttcggctc tgggaagagg ggacaggtgg
     6481 cttaacgttg ctgtgctttc gcagttgaat gtcttgttat ttatccgtgt cctcttggtg
     6541 tgttttcttc ccccttgtct tggttggtat ttggtaccac gttagtgttc tttcttctct
     6601 caaaaggatg tgtatataac ttaagaaaag agaaatgtaa agtgttataa acgagacagc
     6661 tgatgaaggc gcagagacca cccccattct gcgttcaggg ctggctgtcc ctctgcgtgg
     6721 tgaagagaga cactattttt ataccgcaaa aaccacgcgg gggtgagggc ctcccagaac
     6781 cagccagggt gtttggtaga cctggatata ttttatgatc aaatcttgtg gcttgacaca
     6841 tctactgact gaaatggatg ttgtagacta ggttactatt tttgtcatac agaactgaat
     6901 aaaatgcagg atgtcctatt a
//
