LOCUS       NM_001107415            5124 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus spalt-like transcription factor 1 (Sall1), mRNA.
ACCESSION   NM_001107415 XM_001066559 XM_226329
VERSION     NM_001107415.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5124)
  AUTHORS   Ribeiro,P.C., Lojudice,F.H., Fernandes-Charpiot,I.M.M.,
            Baptista,M.A.S.F., de Almeida Araujo,S., Mendes,G.E.F.,
            Sogayar,M.C., Abbud-Filho,M. and Caldas,H.C.
  TITLE     Therapeutic potential of human induced pluripotent stem cells and
            renal progenitor cells in experimental chronic kidney disease
  JOURNAL   Stem Cell Res Ther 11 (1), 530 (2020)
   PUBMED   33298161
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5124)
  AUTHORS   Basta,J.M., Robbins,L., Kiefer,S.M., Dorsett,D. and Rauchman,M.
  TITLE     Sall1 balances self-renewal and differentiation of renal progenitor
            cells
  JOURNAL   Development 141 (5), 1047-1058 (2014)
   PUBMED   24550112
REFERENCE   3  (bases 1 to 5124)
  AUTHORS   Gnemmi,V., Leteurtre,E., Sudour-Bonnange,H., Devisme,L.,
            Guettier,C., Buob,D. and Leroy,X.
  TITLE     SALL4 is a marker of the embryonal subtype of hepatoblastoma
  JOURNAL   Histopathology 63 (3), 425-428 (2013)
   PUBMED   23822878
REFERENCE   4  (bases 1 to 5124)
  AUTHORS   Karantzali,E., Lekakis,V., Ioannou,M., Hadjimichael,C.,
            Papamatheakis,J. and Kretsovali,A.
  TITLE     Sall1 regulates embryonic stem cell differentiation in association
            with nanog
  JOURNAL   J Biol Chem 286 (2), 1037-1045 (2011)
   PUBMED   21062744
REFERENCE   5  (bases 1 to 5124)
  AUTHORS   Uchiyama,Y., Sakaguchi,M., Terabayashi,T., Inenaga,T., Inoue,S.,
            Kobayashi,C., Oshima,N., Kiyonari,H., Nakagata,N., Sato,Y.,
            Sekiguchi,K., Miki,H., Araki,E., Fujimura,S., Tanaka,S.S. and
            Nishinakamura,R.
  TITLE     Kif26b, a kinesin family gene, regulates adhesion of the embryonic
            kidney mesenchyme
  JOURNAL   Proc Natl Acad Sci U S A 107 (20), 9240-9245 (2010)
   PUBMED   20439720
REFERENCE   6  (bases 1 to 5124)
  AUTHORS   Ma,Y., Singer,D.B., Gozman,A., Ford,D., Chai,L., Steinhoff,M.M.,
            Hansen,K. and Maizel,A.L.
  TITLE     Hsal 1 is related to kidney and gonad development and is expressed
            in Wilms tumor
  JOURNAL   Pediatr Nephrol 16 (9), 701-709 (2001)
   PUBMED   11511981
REFERENCE   7  (bases 1 to 5124)
  AUTHORS   Surka,W.S., Kohlhase,J., Neunert,C.E., Schneider,D.S. and
            Proud,V.K.
  TITLE     Unique family with Townes-Brocks syndrome, SALL1 mutation, and
            cardiac defects
  JOURNAL   Am J Med Genet 102 (3), 250-257 (2001)
   PUBMED   11484202
REFERENCE   8  (bases 1 to 5124)
  AUTHORS   Nishinakamura,R., Matsumoto,Y., Nakao,K., Nakamura,K., Sato,A.,
            Copeland,N.G., Gilbert,D.J., Jenkins,N.A., Scully,S., Lacey,D.L.,
            Katsuki,M., Asashima,M. and Yokota,T.
  TITLE     Murine homolog of SALL1 is essential for ureteric bud invasion in
            kidney development
  JOURNAL   Development 128 (16), 3105-3115 (2001)
   PUBMED   11688560
REFERENCE   9  (bases 1 to 5124)
  AUTHORS   Kohlhase,J.
  TITLE     SALL1 mutations in Townes-Brocks syndrome and related disorders
  JOURNAL   Hum Mutat 16 (6), 460-466 (2000)
   PUBMED   11102974
  REMARK    Review article
REFERENCE   10 (bases 1 to 5124)
  AUTHORS   Kohlhase,J., Wischermann,A., Reichenbach,H., Froster,U. and
            Engel,W.
  TITLE     Mutations in the SALL1 putative transcription factor gene cause
            Townes-Brocks syndrome
  JOURNAL   Nat Genet 18 (1), 81-83 (1998)
   PUBMED   9425907
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On Mar 4, 2011 this sequence version replaced NM_001107415.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643287.35700.1,
                                           SRR26360176.1833589.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760400
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-101               JAXUCZ010000019.1  34181078-34181178
            102-3532            JAXUCZ010000019.1  34190142-34193572
            3533-5124           JAXUCZ010000019.1  34194687-34196278
FEATURES             Location/Qualifiers
     source          1..5124
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19p11"
     gene            1..5124
                     /gene="Sall1"
                     /note="spalt-like transcription factor 1"
                     /db_xref="GeneID:307740"
                     /db_xref="RGD:1309916"
     exon            1..101
                     /gene="Sall1"
                     /inference="alignment:Splign:2.1.0"
     CDS             26..3973
                     /gene="Sall1"
                     /note="sal-like 1"
                     /codon_start=1
                     /product="sal-like protein 1"
                     /protein_id="NP_001100885.2"
                     /db_xref="GeneID:307740"
                     /db_xref="RGD:1309916"
                     /translation="MSRRKQAKPQHFQSDPEVASLPRRDGDTEKGQPSRPTKSKDAHV
                     CGRCCAEFFELSDLLLHKKSCTKNQLVLIVNESPASPPKTFPPGPPSLNNPDEQMKFV
                     ASKADQEDCGDLSEHKGLDREESMETEVPVATSSSSSNGGTLSSVTNIATPSCHSGSS
                     TGTSAITTSLPQLGDLTTLGNFSVINSNVIIENLQSTKVAVAQFSQEARCGGASGGKL
                     LISALMEQLLALQQQQIHQLQLIEQIRHQILLLASQNADLSASSVPSQGTLRTSANPL
                     TTLSSHLSQQLAVAAGLAQSLASQSANISGVKQLPPVQLPQSSSGTIIPPSSGPSPNV
                     SMVTATVPTPSSEKVASNAGASHVSPPAVSASSSPAAFAISSLLSPASNPLLPQPTPA
                     NAVFPTPLPNIATTAEDLNALSALAQQRKSKPPNVTAFEAKSTSDEAFFKHKCRFCAK
                     VFGSDSALQIHLRSHTGERPFKCNICGNRFSTKGNLKVHFQRHKEKYPHIQMNPYPVP
                     EHLDNVPTSTGIPYGMSIPPEKPVTSWLDTKPVLPTLTTSVGLPLPPTLPSLTPFIKT
                     EEPAPIPISHSAASPQGSVKSDSGAPDLATRNPSGVPEEAEGSAVPPFGGKGEDSSVV
                     SSIPTAGSSALNSPVADGGAGGTTFTNPLLPLMSEQFKAKFPFGGLLDSAQASETSKL
                     QQLVENIDKKATDPNECVICHRVLSCQSALKMHYRTHTGERPFKCKICGRAFTTKGNL
                     KTHYSVHRAMPPLRVQHSCPICQKKFTNAVVLQQHIRMHMGGQIPNTPVPDNYPESME
                     SDTGSFDEKNFDDLDNFSDENMEECPEGSIPDTPKSADASQDSLSSSPLPLEMSSIAA
                     LENQMKMINAGLAEQLQASLKSVENGSVEGDVLTNDSSSVGGDVESQSSGSPAISEST
                     SSMQALSPSNSTQEFHKSPNVEEKPQRVGPGEFANGLSPTPVNGGALDLTSSHAEKII
                     KEDSLGILFPFRDRGKFKNTACDICGKTFACQSALDIHYRSHTKERPFICTVCSRGFS
                     TKGNLKQHMLTHQMRDLPSQLFEPSSNLGPNQNSAMIPASSLSSLIKTEVNGFVHVSP
                     QDSKDAPTSHVPSGPLSSSATSPVLLPALPRRTPKQHYCNTCGKTFSSSSALQIHERT
                     HTGEKPFACTICGRAFTTKGNLKVHMGTHMWNSTPARRGRRLSVDGPMTFLGGNPVKF
                     PEMFQKDLAARSGSGDPSSFWNQYTAALSNGLAMKANEISVIQNGGIPPIPGSLGNGS
                     SSPISGLTGNVEKLGNSEPSAPLAGLEKMASSENGTNFRFTRFVEDSKEIVTS"
     exon            102..3532
                     /gene="Sall1"
                     /inference="alignment:Splign:2.1.0"
     exon            3533..5124
                     /gene="Sall1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgccccagct gatgtttgag ccagcatgtc gcggaggaag caagcgaagc ctcaacattt
       61 ccaatccgac cccgaagtgg cctcgctccc ccggcgagat ggggacacag agaagggtca
      121 accaagtcgc cccactaaga gcaaagatgc ccacgtctgt ggccggtgct gcgctgaatt
      181 ctttgaatta tcagaccttc tgctccacaa aaagagctgc actaagaatc aattagtttt
      241 gatcgtcaat gaaagtccag cctccccacc aaaaaccttc cctcccggcc cgccgtctct
      301 caacaatcct gatgagcaaa tgaaattcgt ggcgagtaaa gcagaccaag aagactgcgg
      361 cgacctttca gaacacaagg gactcgacag ggaagagtcc atggagacgg aggtcccagt
      421 tgccaccagc agcagcagca gcaacggtgg cactctgagc agtgtcacca acatcgccac
      481 cccaagctgc cacagcggct cttccacggg tacctcagcg atcacaacct ctctacctca
      541 acttggggac ctgacgacac tgggcaactt ctcggtgatc aacagcaacg tcatcattga
      601 aaatctccag agcaccaagg tggcggtggc ccagttctcc caggaagcga ggtgtggggg
      661 ggcctctgga ggcaagctgc tcatctcggc cctcatggag cagctcctag ctctgcagca
      721 gcagcagatc caccagctgc agctcataga acagattcgt caccaaatac tgctgctggc
      781 ttctcagaac gcagatctgt cagcctcttc tgttccttct caaggtactt tacgaacgtc
      841 tgccaacccc ttgaccacac taagttccca tttgtctcag cagctggcgg tggcagctgg
      901 attagcacag agccttgcta gccaatctgc caacatcagc ggtgtgaagc agctcccccc
      961 agtccagcta cctcagagca gctccggcac catcatcccg cccagtagtg gcccatctcc
     1021 caacgtgagc atggtgacag caacagttcc caccccgtcc tcggaaaaag tggcttccaa
     1081 tgctggtgcc tcccatgtca gccccccggc cgtctcagca tcatcctcac cagcagcatt
     1141 cgcaataagc agtctgttga gtcctgcatc taacccactt ctacctcagc cgaccccagc
     1201 taatgctgtt ttccctaccc ctttgcctaa cattgcgaca actgcagaag atttaaacgc
     1261 cctgtctgcc ttggcccagc aaagaaaaag caagccacca aatgtcactg ccttcgaagc
     1321 aaagagtact tcagacgagg cattctttaa acacaagtgt aggttctgtg caaaggtctt
     1381 tgggagtgac agtgccttgc agatccactt gcgctcccat actggagaga ggccgttcaa
     1441 gtgcaacatc tgtgggaaca ggttctccac caagggcaac ctgaaagtcc actttcagcg
     1501 ccacaaagag aagtaccccc acatccagat gaacccctac cccgtaccgg agcacttgga
     1561 caacgtccct acgagcaccg gcatccccta cggcatgtcc atccctccag agaagccggt
     1621 caccagctgg ctagacacca agccggtcct gcccactctg accacttccg tcggcctgcc
     1681 attgcctcct accctcccaa gcctcacgcc cttcatcaag acggaagaac cagctcccat
     1741 cccaattagc cattctgctg ccagccccca aggctcagtc aaaagtgact cgggggcccc
     1801 cgatttggcc acaagaaacc caagtggggt cccagaggaa gccgaagggt ctgctgtgcc
     1861 ccccttcggt ggcaagggtg aagacagtag cgtggtaagc tccatcccga cagcgggcag
     1921 cagtgccctg aactccccag tggctgatgg tggtgcagga gggaccacct tcaccaaccc
     1981 tctgttgccc ctcatgtctg agcagttcaa ggccaagttt ccttttgggg gactcttaga
     2041 ttcagcccag gcctcagaga catccaagct gcagcaactg gtagaaaaca ttgacaagaa
     2101 ggccaccgac cccaacgagt gtgtcatctg ccatcgggtt ctgagctgtc agagcgcttt
     2161 gaaaatgcac taccgaacac acaccgggga gaggcccttc aagtgtaaga tctgcggccg
     2221 ggcttttacc acgaaaggga acctcaagac ccactacagc gtccatcggg ctatgccccc
     2281 actcagagtc cagcattcct gccccatctg tcagaagaag ttcacaaacg cagtggtcct
     2341 ccagcagcac atccgtatgc acatgggagg ccagatcccg aacaccccgg tccctgacaa
     2401 ctaccccgag tccatggagt ctgacacagg ctccttcgat gagaagaatt tcgatgactt
     2461 agacaacttc tcagatgaga acatggaaga gtgtcctgag ggcagcatcc cggatacgcc
     2521 caagtcagct gacgcttccc aagacagcct gtcgtcttca cctctgccac tcgagatgtc
     2581 cagcatcgcc gctttggaaa atcagatgaa gatgatcaac gctggcctgg ccgagcagct
     2641 gcaggccagc ctgaagtcgg tggagaacgg gtcagtggaa ggagatgtac tgaccaatga
     2701 ctcatcctca gtgggtgggg atgtggagag ccagagttcg ggcagcccag ccatctcaga
     2761 gtctacctct tctatgcagg ctctgtcccc atccaacagc acccaagagt tccacaagtc
     2821 acccaatgtt gaggaaaagc cacagagagt ggggccaggc gagtttgcca atggcctgtc
     2881 tcccacccca gtgaacggag gtgctttgga cttgacctct agtcatgcag agaaaatcat
     2941 caaagaagat tccctgggaa tcctcttccc tttcagagac cggggtaaat ttaaaaacac
     3001 tgcttgtgac atttgtggca aaacctttgc ttgtcagagt gccttggaca ttcattacag
     3061 aagtcatacc aaagagagac cgttcatttg cacagtttgc agtcgtggct tttccacaaa
     3121 ggggaatttg aagcagcaca tgttgacaca tcagatgcga gatctgccat cgcagctctt
     3181 tgagcccagt tccaacctcg gccccaatca gaactctgcg atgattcccg ccagctcgtt
     3241 gtcatctctc atcaaaacag aggtcaacgg ctttgtgcac gtttctcctc aggacagtaa
     3301 ggatgccccc actagtcatg tcccttcggg gcctctgtca tcctctgcga catccccggt
     3361 tctgctccca gctctgcccc ggagaacccc caaacagcac tattgtaaca catgtggtaa
     3421 aaccttctct tcctcgagtg ccctgcagat ccacgagaga actcacactg gagagaagcc
     3481 ctttgcttgc actatctgtg gaagagcatt cacaacgaaa ggcaatctga aggtccacat
     3541 gggcactcat atgtggaaca gtacccctgc acgccggggc cgccggctct cagtggatgg
     3601 ccccatgaca tttctaggag ggaatcctgt caagttccca gaaatgttcc agaaggatct
     3661 ggcggcgagg tcaggaagcg gggatccgtc cagcttttgg aaccagtata cagcagcact
     3721 gtccaacggg ctggccatga aggccaacga gatctctgtc attcagaatg gtggcatccc
     3781 tccaattcct ggaagcctgg gcaacgggag cagctcacct atcagcgggc tgacagggaa
     3841 cgtggaaaag ctggggaatt cggaacccag tgctcccctg gctggtctgg agaaaatggc
     3901 gagcagcgag aacggaacca acttccgttt cacccgcttc gtggaggaca gcaaagagat
     3961 cgtcacgagc taaagctgcc agagcgtttc tactcaaaat gccgcccgag gttgcctcct
     4021 gcccccgccc cttaccttct ggcccctggg actatgaact acattatgaa gacattcttt
     4081 tgtacgttgt tcaacctcta gagttctaag aaagcttatt tattagtgct ataaccttgc
     4141 tttgcaaaca gagtgcaagc attaactttg gtcttctgta ttttggacta aatactaatg
     4201 gactagagtg ctctaagctt gctgtaacat ttatggcaat cgcaagttgc cctgctaggc
     4261 ggtcttaatc tggcattaac ttattttcta tatccagttt aatatgaatc tggtgttgat
     4321 gcaatgcctc cgtgatacgt tagatctcta ataaagtctg tatataaatg tacactttga
     4381 tcctgctgga aaattttatc agcaaacaca ttgtctaatc tttccaaaca gatttaaggg
     4441 aaggactttt aagtacaagg ctgaacattt gaaaggctta gggtttttgt tgttgttgtt
     4501 tgtttgtttg tttgttttgg gttttgtttt cattttgatt ctgaacttca acctgctttt
     4561 ttttgtttgt ttgtttttgt tggttttgtt ttgaagagtt aaccatttcc gttttgaacc
     4621 attcgtattg tgctttttac ttgagtcgtc ttcgatgtta accagtttct gtacagtaat
     4681 aagcacgcag aattctttag agggaaaaaa aaccccacaa gtgttgtttt ggtagttgaa
     4741 actgagatgt agcatttttg ccttgtaggg tatcttcaca gtagaaaaag acgtgtgctg
     4801 ggatttcaca atgctgctaa cgatagcatc ttgaacgacc ttcagtggag aaatgtagat
     4861 gctcttgtat atacaataag aaatatccct ttcattaaaa tgtacatatg tcccttacaa
     4921 gagcaaatgc tccttgataa gagcaggtat aatgttggtt tattttgtat tagatatggg
     4981 aggaaagaaa tggactgtta catgcacttt cttggaaagt tgaaaggggg ggttccaatt
     5041 tctttaacat ttaatactta ctaacaacag agatactgta attttactca agtaatcaaa
     5101 tacatttttt ttgcaacaga taaa
//
