LOCUS       NM_001402102            1513 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus serum amyloid A-like 1 (Saal1), mRNA.
ACCESSION   NM_001402102
VERSION     NM_001402102.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1513)
  AUTHORS   Sato,T., Fujii,R., Konomi,K., Yagishita,N., Aratani,S., Araya,N.,
            Aono,H., Yudoh,K., Suzuki,N., Beppu,M., Yamano,Y., Nishioka,K. and
            Nakajima,T.
  TITLE     Overexpression of SPACIA1/SAAL1, a newly identified gene that is
            involved in synoviocyte proliferation, accelerates the progression
            of synovitis in mice and humans
  JOURNAL   Arthritis Rheum 63 (12), 3833-3842 (2011)
   PUBMED   22127701
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000001.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643292.2191.1,
                                           SRR26643290.2091.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-164               JAXUCZ010000001.1  106353665-106353828 c
            165-278             JAXUCZ010000001.1  106352493-106352606 c
            279-362             JAXUCZ010000001.1  106350664-106350747 c
            363-442             JAXUCZ010000001.1  106347706-106347785 c
            443-502             JAXUCZ010000001.1  106346362-106346421 c
            503-618             JAXUCZ010000001.1  106346143-106346258 c
            619-799             JAXUCZ010000001.1  106345577-106345757 c
            800-882             JAXUCZ010000001.1  106343014-106343096 c
            883-1071            JAXUCZ010000001.1  106342737-106342925 c
            1072-1268           JAXUCZ010000001.1  106339182-106339378 c
            1269-1361           JAXUCZ010000001.1  106336930-106337022 c
            1362-1513           JAXUCZ010000001.1  106336421-106336572 c
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q22"
     gene            1..1513
                     /gene="Saal1"
                     /note="serum amyloid A-like 1"
                     /db_xref="GeneID:691143"
                     /db_xref="RGD:1587443"
     exon            1..164
                     /gene="Saal1"
                     /inference="alignment:Splign:2.1.0"
     CDS             30..1454
                     /gene="Saal1"
                     /codon_start=1
                     /product="protein SAAL1"
                     /protein_id="NP_001389031.1"
                     /db_xref="GeneID:691143"
                     /db_xref="RGD:1587443"
                     /translation="MDRNPSPPPPSCDQEDEEDLGSGDRIGNTVYSKHWLFGVLSGLI
                     QTVTPESVTSGPEDEEEQVELAEEMENEICRVWDMSTDEDVALFLQEFKAPDIFMGVL
                     TRSRCPRLREICVGILGNMACFREICESVSKCEDHGQVLLQCLCDSDPPTLLETCRLL
                     LTCLSQTEVASVWVRRIREHPSVYASVCFIMSSSTNVDLLVKVGEVVDKLFDLDEKLM
                     LEWIRNGAARLPDQSQEDSEEQPVFSIVPCILEAAKQVRSENLEGLDVYMHVLQLLTT
                     VDDGVQAIVQCPDTGKDTWSLLFDLVCHEFCQPDDPPVILQEQKTVLASVFSVLSAIS
                     ASRAEQEHLKIEEGDLPLIDSLIRVLQNVEHCQKKPENPSESDTEEPTICGSTQDDFH
                     MKILKDISCEFLSNIFQVLTKETVAQGLKEGQLSKQKCSCAFQSLLPLYSPAVEDFIK
                     VVREVDVALAEDLEGSFPSVKAQT"
     exon            165..278
                     /gene="Saal1"
                     /inference="alignment:Splign:2.1.0"
     exon            279..362
                     /gene="Saal1"
                     /inference="alignment:Splign:2.1.0"
     exon            363..442
                     /gene="Saal1"
                     /inference="alignment:Splign:2.1.0"
     exon            443..502
                     /gene="Saal1"
                     /inference="alignment:Splign:2.1.0"
     exon            503..618
                     /gene="Saal1"
                     /inference="alignment:Splign:2.1.0"
     exon            619..799
                     /gene="Saal1"
                     /inference="alignment:Splign:2.1.0"
     exon            800..882
                     /gene="Saal1"
                     /inference="alignment:Splign:2.1.0"
     exon            883..1071
                     /gene="Saal1"
                     /inference="alignment:Splign:2.1.0"
     exon            1072..1268
                     /gene="Saal1"
                     /inference="alignment:Splign:2.1.0"
     exon            1269..1361
                     /gene="Saal1"
                     /inference="alignment:Splign:2.1.0"
     exon            1362..1513
                     /gene="Saal1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcttccggt tctgttggcg cgcgctggca tggatcgcaa cccgtctcct ccgccgccta
       61 gctgtgatca ggaagatgaa gaggacctgg gtagtggaga ccgcatcggc aacacggtct
      121 acagcaagca ctggctcttc ggcgtcctta gcgggctcat ccagactgtc acacccgaaa
      181 gtgtcacatc tggcccagag gatgaggaag aacaggtgga gcttgctgaa gaaatggaga
      241 atgaaatttg cagagtctgg gatatgtcca cagatgagga tgtggcttta tttctccaag
      301 aatttaaggc tccggacata ttcatggggg tgctgaccag atccaggtgt ccccgattaa
      361 gagaaatctg tgtgggaatt ttagggaata tggcttgctt ccgggagata tgtgagtccg
      421 tcagcaagtg cgaggatcat gggcaggtgc tgctgcagtg tttgtgcgac tcagacccac
      481 ccaccctgct ggaaacctgc aggttgttgc ttacttgcct ttcccagaca gaagtggcca
      541 gcgtctgggt tagaaggatc cgcgagcatc catctgttta cgctagcgtt tgcttcatta
      601 tgtcgagttc aacgaatgtt gacttgctgg tgaaggtcgg ggaggtcgtg gacaaactct
      661 ttgacttaga tgaaaaactc atgctggaat ggattagaaa tggggctgcc cggcttccag
      721 accaatccca ggaggactct gaagagcagc ccgtgttttc cattgtaccc tgtatactgg
      781 aagctgccaa acaagtacgt tctgaaaacc tggaagggct ggatgtttat atgcacgtcc
      841 tacagctgct caccacggtg gatgatgggg ttcaagcaat cgtgcagtgt cctgatactg
      901 ggaaagacac atggagtttg ctttttgacc tggtgtgcca cgaattctgc cagcccgatg
      961 acccgcccgt catcctgcag gagcagaaga cagtgctagc ctctgtcttc tcagtgctgt
     1021 ctgccatcag tgcctcacgg gccgaacagg agcacctgaa gatagaggaa ggggatcttc
     1081 ctctaattga cagcctaatt cgggtgttac aaaatgtgga acattgtcag aagaaaccag
     1141 agaacccctc agagtctgat acagaagaac ctacgatctg tggttccacc caagatgact
     1201 tccatatgaa gatcttgaag gacatttcat gtgaattcct ttctaatatt tttcaggtgt
     1261 taacaaagga aaccgtggcc cagggactga aggagggcca gttaagtaaa cagaaatgta
     1321 gctgtgcatt tcagagcctc ctgcccctct acagccctgc ggtggaagac ttcattaaag
     1381 tcgtgcgtga ggttgacgtc gctcttgctg aagacctgga aggcagcttc ccaagtgtga
     1441 aggcacagac ctgagaccca ggtcggagct tctgctgtcc gaggaataaa cttcgtgttt
     1501 tctgtggttt gaa
//
