LOCUS       NM_001009478            1743 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus serum amyloid A4 (Saa4), mRNA.
ACCESSION   NM_001009478 XM_344893
VERSION     NM_001009478.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1743)
  AUTHORS   Rossmann,C., Windpassinger,C., Brunner,D., Kovacevic,A.,
            Schweighofer,N., Malli,R., Schuligoi,R., Prokesch,A.,
            Kluve-Beckerman,B., Graier,W.F., Kratky,D., Sattler,W. and Malle,E.
  TITLE     Characterization of rat serum amyloid A4 (SAA4): a novel member of
            the SAA superfamily
  JOURNAL   Biochem Biophys Res Commun 450 (4), 1643-1649 (2014)
   PUBMED   25044109
  REMARK    GeneRIF: Luciferase assays with promoter-truncation constructs
            identified 3 proximal C/EBP-elements that mediate expression of
            rSAA4 in McA-RH7777 cells. In line with sequence prediction a
            14-kDa non-glycosylated SAA4 protein is abundantly expressed in rat
            liver
REFERENCE   2  (bases 1 to 1743)
  AUTHORS   de Beer,M.C., Yuan,T., Kindy,M.S., Asztalos,B.F., Roheim,P.S. and
            de Beer,F.C.
  TITLE     Characterization of constitutive human serum amyloid A protein
            (SAA4) as an apolipoprotein
  JOURNAL   J Lipid Res 36 (3), 526-534 (1995)
   PUBMED   7775864
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001009478.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC088188.1, SRR26360186.2844868.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-126               JAXUCZ010000001.1  106388033-106388158 c
            127-224             JAXUCZ010000001.1  106387257-106387354 c
            225-363             JAXUCZ010000001.1  106385564-106385702 c
            364-1743            JAXUCZ010000001.1  106383856-106385235 c
FEATURES             Location/Qualifiers
     source          1..1743
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q22"
     gene            1..1743
                     /gene="Saa4"
                     /note="serum amyloid A4"
                     /db_xref="GeneID:365245"
                     /db_xref="RGD:1307371"
     exon            1..126
                     /gene="Saa4"
                     /inference="alignment:Splign:2.1.0"
     exon            127..224
                     /gene="Saa4"
                     /inference="alignment:Splign:2.1.0"
     CDS             134..526
                     /gene="Saa4"
                     /note="serum amyloid A 4; serum amyloid A-4 protein; serum
                     amyloid A4, constitutive"
                     /codon_start=1
                     /product="serum amyloid A-4 protein precursor"
                     /protein_id="NP_001009478.1"
                     /db_xref="GeneID:365245"
                     /db_xref="RGD:1307371"
                     /translation="MRFVTVIILCSLFLGVSGDGLFSFFKEAIQGTWDLCRAYRDNLR
                     ANHQNSDQYFYARGNFEAQQRGSGGVWAAKIISTGRKYFQGLMNRYYFGIRDHGLESL
                     QSTQKAEEWGRSGKDPNHFRPEGLPEKY"
     exon            225..363
                     /gene="Saa4"
                     /inference="alignment:Splign:2.1.0"
     exon            364..1743
                     /gene="Saa4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggagagaagg ttccagaagc ccaaatccct ctgaaacttc aggcagagaa agggtcattg
       61 ctgtcgcatt tttccaggga ggtcttgctc atggtttact tctgagatcc attgtatata
      121 aagttgcagc gccatgaggt ttgtcaccgt cattatcctc tgctctttgt tcctgggagt
      181 cagtggtgat ggcttgtttt cattcttcaa ggaagccata caagggactt gggacttgtg
      241 cagagcctat cgggacaacc taagagctaa ccaccaaaac tcagaccaat acttctatgc
      301 tcgtgggaac ttcgaggccc aacaaagggg gtctgggggc gtctgggctg ctaaaataat
      361 cagcactggc aggaagtact tccagggcct catgaaccgg tattattttg gaatcaggga
      421 ccatgggttg gaaagcctgc agtctactca gaaagccgag gaatggggcc gcagcggcaa
      481 agaccccaac cacttcagac ccgagggcct tcctgagaag tactgagccc gccactcagg
      541 ttgcactcag agggctgggc tgtgagccac atacctctct ccttgatgtc actcaggttg
      601 gtgtccacaa gaaccaccga gaagctagag ataccccaaa caacggcccg gaagcacgca
      661 ggcccctcac acaaccccac cagatctgct ttagccttta gccacaccaa cttctgctaa
      721 gcaggcccga gccagcaaag tattgtccac catgccaggc ttctctgcaa agtggagttt
      781 gattggagat gagccctggg cacccgtcca tcaatttcct cctacctcat catcttctgg
      841 tcacaacccg gtctctgttt attgtactgt cactcccatg cttttctgag tactgacgca
      901 actctgcctt atcagtcacg tcctatccac tgtctgactg caggccttgt cccctgtgac
      961 ctcttttcag atagggagct ctatgttgag gatgcctcat cctaacctta ggaaccctaa
     1021 cttagaaact gcactgggga ccagggatat agctcagctg gcagggtgct tgcttagcat
     1081 acacagatcc ctaggtggat tcccagagct gcatcagcct ggtgatggta aatacttaac
     1141 tgcggggcac gtgtgtgcac acgcacgcac acgcacgcac gcatacacac acacacacac
     1201 acacacacac acacacacac accagtgcct atctcagctc aagttctaac tactcttggc
     1261 ccatgttacc taagaagtgg ctatcatatc accatttctt ggctttattc taaaggaaag
     1321 tcttttgatc taaacgaaag tctacttcgt gctccagaag gggagcaaga cacaacatca
     1381 ctgagcagga ataaatgtat taatttactc acaaagcaaa cacattcttt taggggaggt
     1441 catctggttt gtaggaccag aaggtactga tgaagaggga gagtccagtc cagagggaat
     1501 aactgccatg ccaaagccag gtccctaggt ggaagaccaa ccccaaagga gtagaaacat
     1561 tgcttcctca aagaaacaga agtggggagg aggaaggagc ccatgggatc gaggatgagg
     1621 aacttgggga ttcaacctgc tcttgtcacg tgttgctact tttagagttt ggcatacttt
     1681 gctatcttgg cctacctgcc tatctgtcta tagggaaaat atactaaaaa acaatgccat
     1741 aaa
//
