LOCUS       NM_001191607             484 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus S100 calcium binding protein A13 (S100a13), mRNA.
ACCESSION   NM_001191607 XM_215607
VERSION     NM_001191607.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 484)
  AUTHORS   Barallobre-Barreiro,J., Oklu,R., Lynch,M., Fava,M., Baig,F.,
            Yin,X., Barwari,T., Potier,D.N., Albadawi,H., Jahangiri,M.,
            Porter,K.E., Watkins,M.T., Misra,S., Stoughton,J. and Mayr,M.
  TITLE     Extracellular matrix remodelling in response to venous
            hypertension: proteomics of human varicose veins
  JOURNAL   Cardiovasc Res 110 (3), 419-430 (2016)
   PUBMED   27068509
REFERENCE   2  (bases 1 to 484)
  AUTHORS   Matsunaga,H. and Ueda,H.
  TITLE     Stress-induced non-vesicular release of prothymosin-alpha initiated
            by an interaction with S100A13, and its blockade by caspase-3
            cleavage
  JOURNAL   Cell Death Differ 17 (11), 1760-1772 (2010)
   PUBMED   20467443
  REMARK    GeneRIF: results suggest necrosis-inducing stress induces an
            extacellular release of prothymosin-alpha in a non-vesicular
            manner; apoptosis-inducing stress does not, owing to loss of its
            interaction with S100A13, a cargo molecule for extracellular
            release
REFERENCE   3  (bases 1 to 484)
  AUTHORS   Cao,R., Yan,B., Yang,H., Zu,X., Wen,G. and Zhong,J.
  TITLE     Effect of human S100A13 gene silencing on FGF-1 transportation in
            human endothelial cells
  JOURNAL   J Formos Med Assoc 109 (9), 632-640 (2010)
   PUBMED   20863990
REFERENCE   4  (bases 1 to 484)
  AUTHORS   Graziani,I., Doyle,A., Sterling,S., Kirov,A., Tarantini,F.,
            Landriscina,M., Kumar,T.K., Neivandt,D. and Prudovsky,I.
  TITLE     Protein folding does not prevent the nonclassical export of FGF1
            and S100A13
  JOURNAL   Biochem Biophys Res Commun 381 (3), 350-354 (2009)
   PUBMED   19233122
REFERENCE   5  (bases 1 to 484)
  AUTHORS   Huang,C.T. and Chen,C.H.
  TITLE     Identification of gene transcripts in rat frontal cortex that are
            regulated by repeated electroconvulsive seizure treatment
  JOURNAL   Neuropsychobiology 58 (3-4), 171-177 (2008)
   PUBMED   19142028
REFERENCE   6  (bases 1 to 484)
  AUTHORS   Hsieh,H.L., Schafer,B.W., Cox,J.A. and Heizmann,C.W.
  TITLE     S100A13 and S100A6 exhibit distinct translocation pathways in
            endothelial cells
  JOURNAL   J Cell Sci 115 (Pt 15), 3149-3158 (2002)
   PUBMED   12118070
REFERENCE   7  (bases 1 to 484)
  AUTHORS   Landriscina,M., Bagala,C., Mandinova,A., Soldi,R., Micucci,I.,
            Bellum,S., Prudovsky,I. and Maciag,T.
  TITLE     Copper induces the assembly of a multiprotein aggregate implicated
            in the release of fibroblast growth factor 1 in response to stress
  JOURNAL   J Biol Chem 276 (27), 25549-25557 (2001)
   PUBMED   11432880
REFERENCE   8  (bases 1 to 484)
  AUTHORS   Landriscina,M., Prudovsky,I., Mouta Carreira,C., Soldi,R.,
            Tarantini,F. and Maciag,T.
  TITLE     Amlexanox reversibly inhibits cell migration and proliferation and
            induces the Src-dependent disassembly of actin stress fibers in
            vitro
  JOURNAL   J Biol Chem 275 (42), 32753-32762 (2000)
   PUBMED   10921913
REFERENCE   9  (bases 1 to 484)
  AUTHORS   Ridinger,K., Schafer,B.W., Durussel,I., Cox,J.A. and Heizmann,C.W.
  TITLE     S100A13. Biochemical characterization and subcellular localization
            in different cell lines
  JOURNAL   J Biol Chem 275 (12), 8686-8694 (2000)
   PUBMED   10722710
REFERENCE   10 (bases 1 to 484)
  AUTHORS   Song,W. and Zimmer,D.B.
  TITLE     Expression of the rat S100A1 gene in neurons, glia, and skeletal
            muscle
  JOURNAL   Brain Res 721 (1-2), 204-216 (1996)
   PUBMED   8793102
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Jul 17, 2010 this sequence version replaced XM_215607.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BF555708.1, SRR26360190.1888533.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-58                JAXUCZ010000002.1  178297020-178297077
            59-249              JAXUCZ010000002.1  178297918-178298108
            250-484             JAXUCZ010000002.1  178303280-178303514
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..484
                     /gene="S100a13"
                     /gene_synonym="S100A1"
                     /note="S100 calcium binding protein A13"
                     /db_xref="GeneID:295213"
                     /db_xref="RGD:1304919"
     exon            1..58
                     /gene="S100a13"
                     /gene_synonym="S100A1"
                     /inference="alignment:Splign:2.1.0"
     exon            59..249
                     /gene="S100a13"
                     /gene_synonym="S100A1"
                     /inference="alignment:Splign:2.1.0"
     CDS             97..393
                     /gene="S100a13"
                     /gene_synonym="S100A1"
                     /codon_start=1
                     /product="protein S100-A13"
                     /protein_id="NP_001178536.1"
                     /db_xref="GeneID:295213"
                     /db_xref="RGD:1304919"
                     /translation="MAAEPPTELESAIETVVTTFFTFAGREGRKGSLSTNEFKELVTQ
                     QLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGELAKEIRKEKVLAIRKK"
     exon            250..484
                     /gene="S100a13"
                     /gene_synonym="S100A1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 taaaaacttc agcctcaggg ctccagatcg gttagctgca tcccatcttc ttgccccggt
       61 cagtctgtgt ggatatcgac tcctgcttcg gcactaatgg cagcagagcc cccgactgaa
      121 ctggagtcag ccattgaaac ggtagtcact accttcttca cctttgcagg gcgggaagga
      181 cggaaaggta gcctgagcac caacgaattt aaggaacttg tcactcagca gttacctcat
      241 ttgctcaagg atgtgggttc tctagacgaa aagatgaaga gcttggacgt gaatcaggat
      301 tcggagctga agttcaatga gtactggaga ctgattgggg aactggcaaa ggaaatcagg
      361 aaggagaagg tcctggcgat tcgcaagaag taaagtctgc tgtcgggatg ggggccagca
      421 gggcctgctg ggcagggcca ggcagcactc cattccccca ataaagcttc cttcctgaaa
      481 caga
//
