LOCUS       NM_001004095             504 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus S100 calcium binding protein A11 (S100a11), mRNA.
ACCESSION   NM_001004095 XM_006232805 XM_215598
VERSION     NM_001004095.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Cheng,M., Shi,Y.L., Shang,P.P., Chen,Y.J. and Xu,Y.D.
  TITLE     Inhibitory Effect of S100A11 on Airway Smooth Muscle Contraction
            and Airway Hyperresponsiveness
  JOURNAL   Curr Med Sci 42 (2), 333-340 (2022)
   PUBMED   35419674
  REMARK    GeneRIF: Inhibitory Effect of S100A11 on Airway Smooth Muscle
            Contraction and Airway Hyperresponsiveness.
REFERENCE   2  (bases 1 to 504)
  AUTHORS   Barallobre-Barreiro,J., Oklu,R., Lynch,M., Fava,M., Baig,F.,
            Yin,X., Barwari,T., Potier,D.N., Albadawi,H., Jahangiri,M.,
            Porter,K.E., Watkins,M.T., Misra,S., Stoughton,J. and Mayr,M.
  TITLE     Extracellular matrix remodelling in response to venous
            hypertension: proteomics of human varicose veins
  JOURNAL   Cardiovasc Res 110 (3), 419-430 (2016)
   PUBMED   27068509
REFERENCE   3  (bases 1 to 504)
  AUTHORS   Guo,Z., Neilson,L.J., Zhong,H., Murray,P.S., Zanivan,S. and
            Zaidel-Bar,R.
  TITLE     E-cadherin interactome complexity and robustness resolved by
            quantitative proteomics
  JOURNAL   Sci Signal 7 (354), rs7 (2014)
   PUBMED   25468996
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 504)
  AUTHORS   Pieragostino,D., Agnifili,L., Fasanella,V., D'Aguanno,S.,
            Mastropasqua,R., Di Ilio,C., Sacchetta,P., Urbani,A. and Del
            Boccio,P.
  TITLE     Shotgun proteomics reveals specific modulated protein patterns in
            tears of patients with primary open angle glaucoma naive to therapy
  JOURNAL   Mol Biosyst 9 (6), 1108-1116 (2013)
   PUBMED   23580065
REFERENCE   5  (bases 1 to 504)
  AUTHORS   Fan,C., Fu,Z., Su,Q., Angelini,D.J., Van Eyk,J. and Johns,R.A.
  TITLE     S100A11 mediates hypoxia-induced mitogenic factor (HIMF)-induced
            smooth muscle cell migration, vesicular exocytosis, and nuclear
            activation
  JOURNAL   Mol Cell Proteomics 10 (3), M110.000901 (2011)
   PUBMED   21139050
REFERENCE   6  (bases 1 to 504)
  AUTHORS   Gonzalez-Begne,M., Lu,B., Han,X., Hagen,F.K., Hand,A.R.,
            Melvin,J.E. and Yates,J.R.
  TITLE     Proteomic analysis of human parotid gland exosomes by
            multidimensional protein identification technology (MudPIT)
  JOURNAL   J Proteome Res 8 (3), 1304-1314 (2009)
   PUBMED   19199708
REFERENCE   7  (bases 1 to 504)
  AUTHORS   Palmer,D.J., Kelly,V.C., Smit,A.M., Kuy,S., Knight,C.G. and
            Cooper,G.J.
  TITLE     Human colostrum: identification of minor proteins in the aqueous
            phase by proteomics
  JOURNAL   Proteomics 6 (7), 2208-2216 (2006)
   PUBMED   16502470
REFERENCE   8  (bases 1 to 504)
  AUTHORS   Mannan,A.U., Nica,G., Nayernia,K., Mueller,C. and Engel,W.
  TITLE     Calgizarrin like gene (Cal) deficient mice undergo normal
            spermatogenesis
  JOURNAL   Mol Reprod Dev 66 (4), 431-438 (2003)
   PUBMED   14579419
REFERENCE   9  (bases 1 to 504)
  AUTHORS   Deloulme,J.C., Assard,N., Mbele,G.O., Mangin,C., Kuwano,R. and
            Baudier,J.
  TITLE     S100A6 and S100A11 are specific targets of the calcium- and
            zinc-binding S100B protein in vivo
  JOURNAL   J Biol Chem 275 (45), 35302-35310 (2000)
   PUBMED   10913138
REFERENCE   10 (bases 1 to 504)
  AUTHORS   Inamoto,S., Murao,S., Yokoyama,M., Kitazawa,S. and Maeda,S.
  TITLE     Isoproterenol-induced myocardial injury resulting in altered S100A4
            and S100A11 protein expression in the rat
  JOURNAL   Pathol Int 50 (6), 480-485 (2000)
   PUBMED   10886724
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On or before Oct 6, 2022 this sequence version replaced
            XM_006232805.3, NM_001004095.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ226917.1, FQ223137.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-57                JAXUCZ010000002.1  181875132-181875188
            58-204              JAXUCZ010000002.1  181878841-181878987
            205-504             JAXUCZ010000002.1  181880243-181880542
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..504
                     /gene="S100a11"
                     /note="S100 calcium binding protein A11"
                     /db_xref="GeneID:445415"
                     /db_xref="RGD:1303295"
     exon            1..57
                     /gene="S100a11"
                     /inference="alignment:Splign:2.1.0"
     exon            58..204
                     /gene="S100a11"
                     /inference="alignment:Splign:2.1.0"
     CDS             64..360
                     /gene="S100a11"
                     /note="calgizzarin; S100 calcium binding protein A11
                     (calizzarin)"
                     /codon_start=1
                     /product="protein S100-A11"
                     /protein_id="NP_001004095.1"
                     /db_xref="GeneID:445415"
                     /db_xref="RGD:1303295"
                     /translation="MPTETERCIESLIAVFQKYSGKDGNSCHLSKTEFLSFMNTELAA
                     FTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAIACHESFLQTSQKRI"
     exon            205..504
                     /gene="S100a11"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 actcctgtcc cagcaaccgt cagcctcagt cgcagccggg cctcgctcct caacttggca
       61 aaaatgccta cagagactga gagatgcatc gagtccctga ttgctgtttt ccagaagtat
      121 agtgggaagg atggaaatag ctgtcatctc tccaaaactg agttcctttc cttcatgaac
      181 acggagctgg ccgccttcac gaagaaccag aaggaccccg gtgtcctcga ccgcatgatg
      241 aagaagctgg acctcaacag tgatgggcag ctagatttcc aagagtttct caaccttatt
      301 ggcggcttag ctatagcatg ccatgagtcc ttcctccaga cttcccagaa gcgtatctaa
      361 ccctctccat tcccttccag ccaccaagtc atcgcctcct ccactccttc ccccatccac
      421 acctgcactg agcccaccac acctaccaca catgcagccc acgcctgaca gggaaaataa
      481 aacaatgtca ttttttaaaa tgta
//
