LOCUS       XM_008761233            4000 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RUN and SH3 domain containing 1
            (Rusc1), transcript variant X3, mRNA.
ACCESSION   XM_008761233
VERSION     XM_008761233.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_008761233.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4000
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4000
                     /gene="Rusc1"
                     /note="RUN and SH3 domain containing 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 29 ESTs, 5 long SRA reads, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 19 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100360417"
                     /db_xref="RGD:2322139"
     CDS             393..3491
                     /gene="Rusc1"
                     /codon_start=1
                     /product="AP-4 complex accessory subunit RUSC1 isoform X1"
                     /protein_id="XP_008759455.1"
                     /db_xref="GeneID:100360417"
                     /db_xref="RGD:2322139"
                     /translation="MLSPQRALLCNLNHIHLQHVSLGLHLSRRPELREGPLSTPPPPG
                     DTGGKESRGPCSGTLVDANSNSPAVPCRCCQEHGPSIENQQDPSQEEEAASPSDPGCS
                     SSLSSCSDLSPDESPVSVYSRDLPGNEDANPQASIFPLELGSPLAPAGPSTCSPDSVC
                     CSPDSCSGISSPPGPDLDSNCNALTTCQDLPSPGLEEEEDSGEQDLATSELSETEDGR
                     IDAGKAEPSWKINPIWKIDTEKTETEWKTIEDSDSGWKTDENTDSSLKTESGKLDSCL
                     NTNSGSKIDAGKTDGGWRGDVSQEPVPHRTITSFHELAQKRKRGPGLPLVPQAKKDRS
                     DWLIVFSPDTELPPTGSLGGSLAPPREVTTFKELRSRSRAQPPPVPPRDPPAGWALVP
                     PRPPPPPVPPRRKKNRLGLQPIAEGLSEEGRAASPPAGEEAPAVQEPEEPRAHAVAGP
                     SLVPRPPVFRFSADGRPLLEGGGTGAPGSLLFTPLTGWPNSRLRLLGAASPPEEQLLP
                     VRLSPVGAYSPPTRGALPCLASPELALLLSPLFPRSSTFPAAAPPPRQVPAPPLPTPR
                     CPPTAPRWTRRPPPPPRQLRSSWSFAGVPGAQRLWMAEAQSGTGQLQEQKKGLLIAVS
                     ASVDKIISHFGAARNLVQKAQLGDSRLSPDVGHLVLTTLCPALHALVADGLKPFRKDL
                     ITGQRRSSPWSVVEASVKPGSCTHSMGSLYSQVSRLAPLSSSRSRFHAFILGLLNTKQ
                     LELWFSTLQEDAGLLSLLYLPTGFFSLARGSCPSLATELLLLLQPLSVLTFHLDLLFE
                     HHHHLPLGLQQAPAPSGPPPALQQTMQAVLHWGGRLAQTLRGTSGEATTDSSTPSTRP
                     PPGSWWDQLTQASRVYASGGTEGFPLLRWGPRRNGTTAEGTQEAPPPTEQTTPGRSVW
                     LGRLFGVPGCSSETDSGAFKSRRPSSWLPPTVSVLALVKRGTPPEVPPEEPVKEPACM
                     VQADRAVRALCDHTAAGPDQLSFQRGEVLRVISTVDEDWLRCGRDGVEGLVPVGYTSL
                     VL"
ORIGIN      
        1 atggatggat agatgggtgg atggcacggg agaggagcag tgaaaaaaag aataaagaag
       61 cgggtgatgg gtggaagatg gagacgagct cagagtgaat ggataaacct tgccgttgcg
      121 ggtgggtgag gacacaggct gaaggctaga actgaatggg gactggggca gatgcagcgc
      181 tgacaagcag aatgcttcct cttcctccag cccagacccc tctcctgcgt taataaccaa
      241 acccttcttc tcattcccga ccatccacct cactagagca tctgggcggg gtctccttcc
      301 tcccagaggt ctgcatctgt actgtcaggt aggtggatgt gagacgctgg atcctgtcgg
      361 ttctctgaaa gccatacgtc gtcctcggca ccatgctgtc ccctcagcgg gctttactct
      421 gcaacctcaa tcacatccat ctccagcacg tctccctagg cctgcacttg tcccgccgtc
      481 ctgaactacg agaggggcct ctgagcacac ccccgccccc aggggacaca gggggcaagg
      541 aaagcagggg gccttgcagc gggacccttg tggacgccaa ctccaacagt ccagctgtgc
      601 cctgcagatg ctgccaggag catgggccca gcatagaaaa ccagcaggac ccctcccagg
      661 aggaagaggc tgcctcgcct tcagatccgg gatgctcttc ctctctcagc tcctgctcag
      721 atcttagccc tgatgagtct ccagtgtcag tctactctcg agacctgccg ggtaatgagg
      781 atgccaaccc tcaggccagc atcttcccct tggagctggg ctctcctctg gctcccgcgg
      841 gtcctagcac ctgctctcca gacagcgtct gctgctctcc tgattcttgc tccggaatat
      901 cttctccacc tggacctgac ctggactcga actgcaacgc cctgaccacc tgccaggacc
      961 taccttcccc aggcttggag gaggaggaag acagtgggga acaggatctt gctacctctg
     1021 agctctcaga gaccgaagat gggagaattg acgcagggaa agcagagccc agttggaaaa
     1081 tcaaccccat ttggaaaatc gacacagaga aaactgaaac tgagtggaaa accatcgagg
     1141 acagtgactc tggttggaaa acagacgaaa atacagactc gagcttgaaa acggaatctg
     1201 ggaaattgga ttcttgtttg aacaccaatt ctggttcgaa aatagatgca gggaaaactg
     1261 atgggggatg gagaggtgac gtcagccagg agccggtgcc ccatcggaca atcacgtcct
     1321 tccatgagct ggcccagaag cgcaagcggg gtccggggct gccccttgtg ccgcaggcca
     1381 agaaagatcg cagcgactgg ctcatagtct tctcgcccga cactgagctc ccgccgactg
     1441 ggtccctggg aggttctttg gcacctcccc gagaagtcac caccttcaag gaactccggt
     1501 cgcgaagccg agcccagccg ccgccagtcc cgccccggga ccctccggct gggtgggctt
     1561 tggtcccgcc tcgaccgcct ccccctcccg tccctccgcg gaggaagaag aatcgacttg
     1621 ggctgcagcc tattgcagag gggctgtcgg aggagggcag ggcggccagc cccccggctg
     1681 gtgaggaggc acccgccgtg caggagcccg aggaaccgcg cgcgcacgcc gtggccggtc
     1741 cctcgctagt ccctcggccc ccggttttcc ggttctcggc cgacgggcgc cccctgttgg
     1801 agggtggggg cacgggcgca cccgggtccc tgctctttac gcctctgacc gggtggccca
     1861 attcccggct ccggctgctg ggggcagcga gtcccccgga ggagcagctc ctgcctgtgc
     1921 gcctgtcccc agtgggagcc tattctcctc ccacgcgggg ggccttgcct tgcctggcca
     1981 gccccgaact ggcactgctg ctatccccgc tcttccccag aagtagcacc ttccccgccg
     2041 cggcgccccc accccgccag gttcccgccc ccccgctgcc aacaccacgg tgtccgccga
     2101 ccgcccctcg ctggaccaga aggccaccac ctccgcccag gcaactgcgc agttcctggt
     2161 cgtttgccgg tgttccgggg gcccagcggc tgtggatggc agaagcccag agtgggactg
     2221 gtcagctgca ggagcagaag aaaggtctcc tgatagctgt cagcgcttca gtggacaaaa
     2281 tcatctcgca ctttggggct gctaggaact tggttcagaa agctcaactg ggggatagcc
     2341 ggctgagtcc agatgtgggg catctggtat tgaccacgct ctgcccggct ctccatgctc
     2401 tggtggctga tgggctgaag ccattccgga aggacctcat taccgggcag cgtaggagta
     2461 gcccttggag cgtggtggag gcctctgtga aaccaggttc ctgcacacat tccatgggat
     2521 ctctgtacag ccaggtcagc cgactggccc ccctgagtag cagccgcagc cgcttccacg
     2581 ctttcatctt gggcctcctc aataccaaac agttggaact gtggttctcc accctccagg
     2641 aggatgcagg cctcctatcc ctcttgtatc tgcccaccgg cttcttttcc ctggcacgcg
     2701 gtagctgtcc atccctggct acagagctgc tgcttctgct gcagccgctg tcggtgctca
     2761 ccttccacct ggacctgctc tttgagcacc accaccacct gcccctgggc ctgcagcagg
     2821 ctcctgcccc ttcaggcccc cctcctgccc tccagcagac tatgcaggct gtgctgcact
     2881 gggggggacg tttggctcag actctccgag ggacttcagg ggaggccact acagactctt
     2941 cgaccccctc cacgcgccct ccaccaggca gctggtggga tcagctgacc caggcttctc
     3001 gagtctatgc ctctggaggc actgagggct tccctcttct tcggtgggga cccaggcgga
     3061 atggaactac cgctgagggt acacaggagg cacctccacc cacggaacaa accacaccag
     3121 gcagaagcgt gtggttgggg cggctatttg gtgtgcctgg gtgctcctca gaaactgaca
     3181 gcggcgcctt caagtccagg agaccatcca gctggttgcc cccaacagta agtgtgctgg
     3241 ctctggtgaa gagggggacg ccacccgagg tccctcctga ggagcctgtg aaggaaccag
     3301 cctgcatggt gcaggctgac agggcagtcc gggctctctg tgaccacact gctgcaggac
     3361 ctgaccagtt gagcttccag cgtggggaag tgcttcgtgt catttccaca gtggatgagg
     3421 actggcttcg ctgtgggcgg gatggtgtgg aggggctggt gccggtggga tacacctccc
     3481 ttgttctgta gctctgagcc tgtttccttt tcctaggctc atgaatactg ttcatgtgaa
     3541 ctgaccatcc cagaagcatt tttccttctg caaacccaca tttcttccca tatctatttc
     3601 tgtggacagt taaaataaac tttccttctt ccctcaacac ccacctttga ggtgaaatct
     3661 gctcttgcaa atatgtaaaa aggacttcct gtccacagga ttcctctttc tccatctgca
     3721 caagagaaca ctgtccttcc tatctgcaaa tcagtatcta tcccacctct accttcaccc
     3781 aagtggactg tgccagtata gtacacatgc ctttgcccca accctcagga cctgcggtct
     3841 cctcactgtg gtctgtctct agcccttgct gctgtattta agatgtgctc ctgctgtgtt
     3901 aagtactgga tggaagcctg gacacccctg gtgggtaagc ctgtgccaat ggtctgcctc
     3961 tttccctctt tgtcccaata aaatgtggga gttgaacaga
//
