LOCUS       NM_001034950             538 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus urinary protein 2 (Rup2), mRNA.
ACCESSION   NM_001034950
VERSION     NM_001034950.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Southan,C., Cutler,P., Birrell,H., Connell,J., Fantom,K.G.,
            Sims,M., Shaikh,N. and Schneider,K.
  TITLE     The characterisation of novel secreted Ly-6 proteins from rat urine
            by the combined use of two-dimensional gel electrophoresis,
            microbore high performance liquid chromatography and expressed
            sequence tag data
  JOURNAL   Proteomics 2 (2), 187-196 (2002)
   PUBMED   11840564
REFERENCE   2  (bases 1 to 538)
  AUTHORS   Wait,R., Gianazza,E., Eberini,I., Sironi,L., Dunn,M.J., Gemeiner,M.
            and Miller,I.
  TITLE     Proteins of rat serum, urine, and cerebrospinal fluid: VI. Further
            protein identifications and interstrain comparison
  JOURNAL   Electrophoresis 22 (14), 3043-3052 (2001)
   PUBMED   11565799
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Feb 10, 2021 this sequence version replaced NM_001034950.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY327506.1, AA819164.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMEA5760476
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-98                JAXUCZ010000008.1  43551359-43551456   c
            99-215              JAXUCZ010000008.1  43550417-43550533   c
            216-369             JAXUCZ010000008.1  43549809-43549962   c
            370-538             JAXUCZ010000008.1  43547875-43548043   c
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q21"
     gene            1..538
                     /gene="Rup2"
                     /gene_synonym="UP-1"
                     /note="urinary protein 2"
                     /db_xref="GeneID:619560"
                     /db_xref="RGD:1561250"
     exon            1..98
                     /gene="Rup2"
                     /gene_synonym="UP-1"
                     /inference="alignment:Splign:2.1.0"
     CDS             38..343
                     /gene="Rup2"
                     /gene_synonym="UP-1"
                     /note="liver regeneration-related protein LRRG05; Urinary
                     protein 1; RUP-1"
                     /codon_start=1
                     /product="urinary protein 1 precursor"
                     /protein_id="NP_001030122.2"
                     /db_xref="GeneID:619560"
                     /db_xref="RGD:1561250"
                     /translation="MGKPILLLPLGLSLLMSSLLALQCFRCESLDSTGLCRVGRRICQ
                     TYPDEICAWVVVTTRDGKFVYGNQSCAECIGTTVEHGSLIISTNCCSATPFCNMVHP"
     exon            99..215
                     /gene="Rup2"
                     /gene_synonym="UP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            216..369
                     /gene="Rup2"
                     /gene_synonym="UP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            370..538
                     /gene="Rup2"
                     /gene_synonym="UP-1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tctgctgatt tctggtttga agatcaatct cactgcaatg ggaaagccta tcttgctgct
       61 cccactgggc ctgtctttgc tcatgagctc cctgctagct ttgcagtgct tcagatgtga
      121 aagcctcgat tctacaggac tttgtcgtgt tggaagacgt atatgtcaga cttatcctga
      181 tgagatttgt gcctgggttg tagtaaccac tcgagatgga aaatttgtat atggaaacca
      241 gagctgtgct gagtgcatcg gtacgactgt tgagcatgga agtcttataa tatcaacaaa
      301 ctgttgctca gccacccctt tctgcaatat ggtacatccc tgatacttaa ttgtatggaa
      361 ggattttagt gctctttatt gagtcttgac agtggagcat gccagaaaga ataatctact
      421 gaccatgtct ggacaactca ctatgatttc tacatcgtgt tttctgacta catgtatatc
      481 atatgttctt gggtgatctg taataaattg aaagccttac atattttaat ttgaacta
//
