LOCUS       XM_008763548            5716 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RUNX1 partner transcriptional
            co-repressor 1 (Runx1t1), transcript variant X7, mRNA.
ACCESSION   XM_008763548
VERSION     XM_008763548.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008763548.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008763548.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5716
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5716
                     /gene="Runx1t1"
                     /gene_synonym="Cbfa2t1"
                     /note="RUNX1 partner transcriptional co-repressor 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 26 ESTs, 1 long SRA read, 32 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 28 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:362489"
                     /db_xref="RGD:1305490"
     CDS             257..1960
                     /gene="Runx1t1"
                     /gene_synonym="Cbfa2t1"
                     /codon_start=1
                     /product="protein CBFA2T1 isoform X4"
                     /protein_id="XP_008761770.2"
                     /db_xref="GeneID:362489"
                     /db_xref="RGD:1305490"
                     /translation="MPDSPVDVKTQSRLTPPAMPPPPTTQGAPRTSSFTPTTLTNGTS
                     HSPTALNGAPSPPNGFSNGPSSSSSSSLANQQLPPACGARQLSKLKRFLTTLQQFGND
                     ISPEIGERVRTLVLGLVNSTLTIEEFHSKLQEATNFPLRPFVIPFLKANLPLLQRELL
                     HCARLAKQNPAQYLAQHEQLLLDASTTSPVDSSELLLDVNENGKRRTPDRTKENGFDR
                     EPLHSEHPSKRPCTISPGQRYSPNNGLSYQPNGLPHPTPPPPQHYRLDDMAIAHHYRD
                     SYRHPSHRDLRDRNRPMGLHGTRQEEMIDHRLTDREWAEEWKHLDHLLNCIMDMVEKT
                     RRSLTVLRRCQEADREELNYWIRRYSDAEDLKKGGSGSSSHSRQQSPVNPDPVALDAH
                     REFLHRPASGYVPEEIWKKAEEAVNEVKRQAMTELQKAVSEAERKAHDMITTERAKME
                     RTVAEAKRQAAEDALAVINQQEDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWE
                     KHHHICGQTLQAPQQGETPAVSSSVTPSSGAGSPMDTPPAATPRSTTPGTPSTIETTP
                     R"
ORIGIN      
        1 gcgcggcgtg ggggcggccc cccaacgatc ccgagcagat aagagccagg gaagtgaaga
       61 tgtaacctgt tatcgggagc tcctcttagc tgccagaggg aatttacatt taaagattac
      121 agagggagag ggagaggatc tgccttttgt tgtgctgggt gaggaggagg cagcggccct
      181 ggcctccctg ctatctccca acacctctgc tatccagacg gggactcgcg gagatcgtac
      241 cgagaagcac tccacgatgc cagactcacc tgtggatgtg aagacgcagt ctaggctgac
      301 tcccccagca atgccgcctc ctccgaccac tcaaggagcc ccgagaacca gttcgtttac
      361 gccaacgaca ttaacgaatg gcaccagcca ttcacccacg gccttgaatg gcgccccctc
      421 accgcctaat ggctttagca acgggccttc ctcttcctct tcctcttctc tggctaatca
      481 acagctgccc ccagcctgtg gtgctagaca actgagcaag ctgaagcgat ttcttactac
      541 cctgcagcag tttggcaatg acatttcacc agagattgga gaaagagttc gcactcttgt
      601 actaggactg gtgaactcta ctttgacaat tgaagaattt cattccaaac ttcaagaagc
      661 tactaacttc ccactgagac cttttgtcat cccgtttttg aaggccaacc tgcccctgct
      721 acagcgtgaa ctcctccact gcgcaaggct agccaaacag aaccctgccc agtacctcgc
      781 tcagcacgaa cagctgcttc tggatgccag caccacctcc cctgtcgact cctcagagct
      841 gcttctcgat gtgaacgaaa acgggaagag gcgaactcca gacagaacca aagaaaatgg
      901 ctttgacaga gagcctttgc actcagaaca tccaagcaag cgaccatgca ctattagccc
      961 aggccagcgg tacagtccaa ataatggctt atcctaccag ccaaatggcc tgcctcaccc
     1021 caccccacct ccacctcagc attaccgttt ggatgatatg gccattgccc accactacag
     1081 ggactcctat cgacacccca gccacaggga cctcagggac agaaatagac ctatggggtt
     1141 acatggcaca cgtcaagaag aaatgattga ccacagacta acagacagag aatgggcaga
     1201 agagtggaag catctcgatc atctgttaaa ctgcataatg gacatggtag agaagacgag
     1261 gcgatccctc actgtactaa gacgatgtca ggaagcagac cgggaagaac tgaattactg
     1321 gatccggagg tacagtgatg ctgaggactt gaaaaagggc ggcagcggta gcagcagcca
     1381 ctccaggcaa cagagccccg tcaatccgga cccagtcgca ttagatgcac atcgggaatt
     1441 ccttcacagg cctgcgtctg gatacgtgcc agaggagatc tggaagaaag ctgaggaggc
     1501 tgtgaatgag gtgaagcgac aggcaatgac ggagctgcag aaagccgtgt ctgaagccga
     1561 gaggaaagcc catgacatga tcaccacaga gcgagccaaa atggaacgca cggtggctga
     1621 agccaagcgg caggccgcag aggatgctct ggcagtcatc aaccagcagg aagactccag
     1681 tgagagttgc tggaactgtg gccggaaagc aagtgagacc tgcagcggct gtaacacggc
     1741 ccgatactgt ggctcttttt gccagcataa agactgggag aagcatcacc acatctgtgg
     1801 acagaccctg caggccccac agcagggaga aacgcctgct gtcagctcct cagtcacgcc
     1861 cagcagtggg gctgggagcc caatggacac accaccagca gccactccga ggtctaccac
     1921 ccccggaacc ccctccacca tagagacgac gcctcgctag acctaaactc agactgtcag
     1981 aggaaagaca ccacaaccaa cacgaaagca attcctcatc ctcagatgct caaagtccct
     2041 tttctgtttg tttgtttata gatgaactat ctatcttatt tcagtacttc ggcaagagag
     2101 aacctaactg tatctttgag gcgatagtaa aacacagagg ccagtaacgg gtcgtaatga
     2161 cttactgtgg aaaacaaaga tatcttttct ttagagaact gaaaagagag gaaagaatat
     2221 aacgtgaaat gctagatttg acctcctccc tgttattttc aagtagctgg gattttaaac
     2281 tagatgacct cattaaccaa tgctttacca aacagcaaac caagagattg ctaattgctg
     2341 ttgaaagcaa aaatgctaat attaaaagtc acagtgttct ttatatacaa taatggaaag
     2401 aaaaaaaaaa aagaggcaat tcctcaaggg cacgagcgtt ggatacagca gtagacattt
     2461 taacaagaag atgaatggcg tctgtgggtt gctaactgaa ctttgaagac cggctgcaaa
     2521 acgcacagat gtgcagcaga ttggaaggag acacagatgt tcgttttttt ttcccccgtt
     2581 tctgaaaaag aaataataat atccaggtca acagaatgaa aaatgaaaga tgatttccag
     2641 tggggtgtat gactacagca gcaagaaaaa aaaaattgcc ataatacaaa ggctcctttt
     2701 tatatcacac acacacacac acacacacac acacacacac acacacacac acacactcac
     2761 tctctctctc cctctctctc tctcttaaga gactcagcct gcagttaatt agcattctgg
     2821 cagcttccaa gtcagccagc tgccctaaat aacccttcaa cgtttcttca cttttgcaag
     2881 gttccacaga gtaagacatt gaatctattc cagcttattc attttatatc gaaaaaccaa
     2941 tttttttaaa aaaaaaaatg gcggcttcag ctccagcccc tttccaaaat ttttcaaccc
     3001 caccctgttt gggtttttaa ttaaaatcta gtagttctct tggtattaaa acacttctgt
     3061 cctgtgaggt tttcccaatg gtgtttttct tgtaaatgtg ttggacaaat gtgaagatgc
     3121 gttgtagttg atccatatgc ccacatttag tctctttatt cctagttggt gagagaaacc
     3181 agtatctttc tatgctgctt ttatatctgt atgtattagt gatatttctc tagtagttaa
     3241 aaaaaaaaaa tgaaaagaaa agaaaaaaaa aaaccacact ttttttggtt gtcctcaaga
     3301 aaagaagaaa agaaaagaaa agaaaaagct atcttttgga gctgctaact cactctctta
     3361 taggattttt ttcctggaaa ccagcatgct tcatggaatg ctagcacatg gatgttttta
     3421 agagggatgt acataaatgt attttgcact gtcacaatga ctccctaggc atgctttttt
     3481 tttttcaaac caacttttta aatatgctag agccatttca ccaattttag ctgtagcata
     3541 gagtagtagt ggaatttttc ttttatcctt ttttttatga aaaaaaaaat tattagggac
     3601 tttttaaaaa aaaataaaat aagatatcct actttaaaaa aaaaggacag tgcatgcata
     3661 ttgctgtaag gttgtttaag tatttctaat tttacaaaaa aaaaatgaaa aaaaaaatca
     3721 ttagctctcc aaatgctgag gtgtagacgg acagctttag ccctgctgag tgccaggtta
     3781 tacagtattc ttacaaaagg gaagtcagcc aaagactgat ctgatggacc aaaatcggaa
     3841 tttttgaaaa gcaccagtaa tcctttccaa atgatcagca ggttaaacat gttcagtgtg
     3901 actccattaa cccttcgttg tccagggtcc agaccagaac tacttgttag ttttgaaaca
     3961 cattattagc ccaggatgtg gttgtgtgct ttaagagtcg gcagtgctgc aggctgtgta
     4021 gacaaccaaa gttgaaaggc tgggaagaca cttttccaca tacacataca ccaggcattt
     4081 ctttacaaaa ttgagtacaa tccattagct tgtgggaggg gggagcgggt aatgtagccc
     4141 ttggatacag ttttaagtgg ttgtgtttta agttttctgc atagatgcaa tcctcacggg
     4201 attgcttcat gtctcgcaaa tctaaggttt ccttaaacca tttcccctgt attttcatat
     4261 accagtcggt tttgattttg tcccggtagt gttgtgttct tttctcttgt cgtcgtcgtc
     4321 gttgttttca atggcctttt agtttaggaa gttctgatga gcgaatcaat gcatctatct
     4381 atctgcatgt tggaagtcca tctgccagca cacccgctaa ggcaaagaga agcgcataac
     4441 caggctgcga atgggttcta ttttaccatg gtgctcccag aatcctttga cctcattctg
     4501 ctttctagtc tgcttgtgac actggacagt cctttcttag agctattata tgttctaggc
     4561 tacgaagggt taaataatcc caaaaaaaat aacaaaaaaa aatgaggtat gtcataccct
     4621 cgcgtctcga tctcaagaag ctgtgatgta tgtggaacag cactgttatt ctgaacacta
     4681 gtgtgtaaaa taaggattag tacagtacgt ctcattcctt ttttaattca gggcaccctg
     4741 agtgaaaacc aatacaaaaa aaaaaaaaaa tccctaactc tgagctctgt ctctaattcc
     4801 tcttcctcct tcccctcttc ctcctcctct tcctctactc ctgttttgct acattctcct
     4861 cagtggcaaa aagtttcact ctacctctga cagcatgtat attgcaccag tcgctaacga
     4921 aaactggtct agtcaaacca aatgggcaca aaagaaccag gataccaaaa gttaagctca
     4981 tacagctgcg aaccatatca cttcttggta acaatgcaga cctcataaac ctaaaaaaaa
     5041 agagaaagaa aagaaaactt ttgttacttt ccttttttgc ttgtcactta tatacaggct
     5101 atgtgagagt attcatttgt aggtattaca cattaaaaaa aaaaagctat cttcattgga
     5161 tagaactgaa tggtggtcgc tgataggaat agggcgtcct ctatctctta tctctgtctc
     5221 ttttctcttt ctctttctct gtcatgagac tgtgtgtgac agggctacct gtctttttaa
     5281 tttgttttct gaactttttt tttttaatgt gtaggtgcat gtcttgggga tttaaaaatt
     5341 tcaaggctgg tttacttatg caaagcatgc ctatgtctgg aatacttagg gaaagaaagt
     5401 gactccatgt tgtccgaatt cctcaaggga cagaaaaaca aattggagac tgttgaaatg
     5461 cagatttgaa gtaattttat ttttaattat tttgggttct gcgacattat tgtgaaaaat
     5521 taaagtcgtt gtgcaatact taattcagac acgtgccaca agttaacggt agactaacac
     5581 tggggggcgg gggctaggca tcacgctttt gtctgcatac tcttgagctt ttaagtctac
     5641 tatgtctgaa ctgtggtttc ttgtttatcc ttttttgttt tttccttagt tggactgtaa
     5701 tgtatggtct gtcaac
//
