LOCUS       NM_001047116            3596 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus RUN domain containing 3B (Rundc3b), mRNA.
ACCESSION   NM_001047116 XM_001070103 XM_001070146
VERSION     NM_001047116.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3596)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001047116.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC107563.1, SRR22582424.480109.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-359               JAXUCZ010000004.1  26417688-26418046
            360-475             JAXUCZ010000004.1  26448090-26448205
            476-609             JAXUCZ010000004.1  26472511-26472644
            610-695             JAXUCZ010000004.1  26482569-26482654
            696-785             JAXUCZ010000004.1  26499836-26499925
            786-866             JAXUCZ010000004.1  26504609-26504689
            867-1035            JAXUCZ010000004.1  26520784-26520952
            1036-1193           JAXUCZ010000004.1  26529366-26529523
            1194-1315           JAXUCZ010000004.1  26549819-26549940
            1316-3596           JAXUCZ010000004.1  26552124-26554404
FEATURES             Location/Qualifiers
     source          1..3596
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q12"
     gene            1..3596
                     /gene="Rundc3b"
                     /note="RUN domain containing 3B"
                     /db_xref="GeneID:688590"
                     /db_xref="RGD:1587590"
     exon            1..359
                     /gene="Rundc3b"
                     /inference="alignment:Splign:2.1.0"
     CDS             250..1461
                     /gene="Rundc3b"
                     /codon_start=1
                     /product="RUN domain-containing protein 3B"
                     /protein_id="NP_001040581.1"
                     /db_xref="GeneID:688590"
                     /db_xref="RGD:1587590"
                     /translation="MASRSLGGLSGSRGGGKKSLSARNAAVERRNLITVCRFSVKTLI
                     DRSCFETIDDSSPEFNNFAAVLEQILSHRLKGQVTWFGYESPRSFWDYIRVACRKVSQ
                     NCICSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEEGAIVLG
                     EEANMLAGMLLGLNAIDFSFCLKGEGLDGTFPAVIDYTPYLKFEQSSDSISSDEEELR
                     TFGSSDSEGSTPENVGPPLILDENSWFNKCKRVRQKYQLTLEQKGYLEELLRLRENQL
                     SESVSQNKILLQRIEDSDLAHKLEKEQLEYIIVELQDQLKSYQSLDQLSAEVSLSQAS
                     LDPGHSQEGDGKQDSLNFIGEGKEDTPSLLGLCGSLTSVASYKSLTSLKSNDCLASPT
                     TEITSPGLTPS"
     exon            360..475
                     /gene="Rundc3b"
                     /inference="alignment:Splign:2.1.0"
     exon            476..609
                     /gene="Rundc3b"
                     /inference="alignment:Splign:2.1.0"
     exon            610..695
                     /gene="Rundc3b"
                     /inference="alignment:Splign:2.1.0"
     exon            696..785
                     /gene="Rundc3b"
                     /inference="alignment:Splign:2.1.0"
     exon            786..866
                     /gene="Rundc3b"
                     /inference="alignment:Splign:2.1.0"
     exon            867..1035
                     /gene="Rundc3b"
                     /inference="alignment:Splign:2.1.0"
     exon            1036..1193
                     /gene="Rundc3b"
                     /inference="alignment:Splign:2.1.0"
     exon            1194..1315
                     /gene="Rundc3b"
                     /inference="alignment:Splign:2.1.0"
     exon            1316..3596
                     /gene="Rundc3b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgtgcgtgcg tgtgagtgag cgtgtgtgtg tgagtgagct tgtgtgtgag cgtgtgtgca
       61 cgcgcgcgtg gcaccagggt ggcgggcgcg ggtgctccac tgccttccac acaccctgcc
      121 tgctccgcgg ctccttcctc gcccctctcc cgccccgcgg gctgccatcc tgagagaagg
      181 ccgcaggtca caggtgtgct aggcttgcgg gaccgctgga gacaaagggg gcgcggaggt
      241 gagcccgcca tggcctcccg gagcctgggg ggcctgagcg ggagccgcgg cggcggcaag
      301 aagagcctga gcgcccgcaa cgctgcggtg gagaggagga acctgatcac cgtgtgcaga
      361 ttttctgtga agaccctgat tgatcggtct tgctttgaaa caattgatga ttcttctcct
      421 gaatttaata actttgcagc tgttctggaa caaattctaa gtcaccggct gaaaggtcaa
      481 gtaacctggt ttggctatga aagtcctcgt agcttctggg actacatcag agtggcttgc
      541 cggaaagttt cacaaaactg tatctgtagt attgaaaata tggaaaatgt cagttcctcc
      601 agagctaagg gtagagcctg gatcagagta gcactcatgg aaaaacattt gtctgaatac
      661 atctctacag ctttgagaga cttcaaaaca accaggaggt tttatgaaga aggagcgatt
      721 gtcctggggg aagaggcaaa catgcttgct ggcatgctgc tgggcctcaa cgccattgac
      781 ttcagcttct gcctaaaggg agaaggattg gatggcacct tccctgctgt gatagactat
      841 acaccatatt tgaagtttga gcaaagttct gacagcatca gcagtgatga ggaagagctc
      901 aggacattcg ggagcagtga cagtgagggc agcacccctg agaacgtggg cccgcctcta
      961 atcctggacg agaacagctg gttcaacaag tgcaagagag taaggcagaa gtaccagctc
     1021 accctggagc agaagggtta tcttgaagaa ctcttacggc ttcgtgagaa ccagctttct
     1081 gaatctgtct ctcagaataa aatcctactt cagaggatcg aagattctga cctggcccac
     1141 aaactggaga aagaacagtt agaatatatc atcgtggagc ttcaggacca gcttaaaagt
     1201 taccaaagcc ttgaccagtt atcagcagaa gtcagccttt ctcaggcctc attggatccc
     1261 ggccactcac aagaaggcga tggaaagcaa gactcattga atttcatcgg tgaaggtaaa
     1321 gaagatactc cctcacttct tggtctttgt gggtcactaa catcagtggc aagttacaag
     1381 tccctaacaa gcctaaaatc caatgactgc cttgcaagcc ccaccacgga gataacaagc
     1441 ccaggcctga ctccatcctg aaagactacg taaaaaccca aagtttctgt attgtaaata
     1501 tcctgtttac ataagtttgg ctgctgggag atctttgaaa ttttatattc tggtacatgc
     1561 gtagcatttt gtcgttcgga gatttcagtc cagcccaggt aaagttccga gggtaaggca
     1621 tagcagtccc cctatttttc tttttaaatt agtacatttg tcactgagga tgtttaaagt
     1681 tcaataggct ttaaaagtct cacaaagatt gtctgaatcc attataaagt gtacatagtt
     1741 gttattcaac cgatttttta tatttgttta aatgtgtctt agtgtccaga gactagatcc
     1801 aggttttatt ccagagactt aagcttaatg gtttctttca ctcctttatt tggtggttaa
     1861 atttgcacaa aaggcaactc taatttcatg acgcactcct gcgctctgtg tctgtgtaac
     1921 atgctttgag gggaagtctc cagccgcagc tatttaagtt ttccttttgt cattcggtac
     1981 caacttctag catttcataa attttgtaga aatgtgcctt tttaggcggt tgctgactta
     2041 attttaaggt atgaaggaaa agcattttat atataaaaaa taaatgcatt tcttagactt
     2101 attttccctg gtgtgcctaa gacattggaa acctttcaaa atacaaaaca aatgttggca
     2161 aggtatttct tacatcggaa gtttccagtt taatgagtga tttgagaact tttagagaac
     2221 aacctcgtga gtgaccagga taactgactg tggatgtatg tctgagccac agtgctattt
     2281 ctccctgtgt gcaaccacga gttatactgg atgtttcaca accattacca ctattccctg
     2341 atttctcatt tttcaaactg atcttatact tcaaaatcct atacttctgt aggaaaacag
     2401 gttttcttca aacagttgtg tttcaaatct ctctctctct ttttttttta catttttttt
     2461 gaaacagcta catgtgtccc taaaaattcc actgtattga aaacgaagtg tatattctat
     2521 agtgagtcac aggaggaaaa caagtgtgcc aaagacattt cctacactgt tcatgaaggg
     2581 gccacagtcc tcgctcttgt ctgttaattt ttatatttaa acctagcagc ggtgacatgg
     2641 cggacgttta tccctcctag aaagcttcct gaggagagct gaactcacac gttcattcct
     2701 tgtgcccaaa ctgtgtagga gagggaggtt ctgggaaatg cttggagctc agtctcctgg
     2761 tgtagaatca gtcaatagta acgtgaccgg tgtcacatgt gagacagtgc agacactaat
     2821 ttctggggca atggaagcct ggaagctcga ggtagacatt gcattggatg gctcagaaca
     2881 cactgagagc tttcttccag taggcgatat taaagcagag cacctctgtc tgctttgaac
     2941 tgtgtctatc gtttaagaac acagtcgcca agaccacttt taaatagtgt ccggaatagc
     3001 aaatcaagac agcaggcctg caggaggctg catggagact tagatggcca tgagaatgtt
     3061 gggaatttag gctggccatg ggcacgcctc tacttcccta agaactctca aagtgtttac
     3121 ccctttatca ctatggcctg ctctcacctg tcatttatga ttttttccag atatagaaag
     3181 aacattgtta agatcttttc atacattttt ataaagtaga agggaataca agattcccca
     3241 gttggtacac tttttcatct ctgtcccata gtaacactag tttgtgacat atccctgctg
     3301 caaaccacag actgagacat gacacctgag gaccatggct ttccctccgc tattggagct
     3361 cttgatacaa agttcatctg ctactgtgga atccgagttt ctacagttgg ttctgagcta
     3421 tatgcagtcc gtaatgcttg catgagtgaa cggcgtctca gtctttaatt accagtggta
     3481 ctgtgtattt ctcagaaccc cacagagaat gccggcttag tctctttccg tctgtattcc
     3541 gttgccttga tgtactatat ttgttgcatg tatattaaaa aaaattttta accata
//
