LOCUS       NM_001398769            3282 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus RUN domain containing 1 (Rundc1), mRNA.
ACCESSION   NM_001398769 XM_003750935
VERSION     NM_001398769.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3282)
  AUTHORS   Wilson,R., Geyer,S.H., Reissig,L., Rose,J., Szumska,D., Hardman,E.,
            Prin,F., McGuire,C., Ramirez-Solis,R., White,J., Galli,A.,
            Tudor,C., Tuck,E., Mazzeo,C.I., Smith,J.C., Robertson,E.,
            Adams,D.J., Mohun,T. and Weninger,W.J.
  TITLE     Highly variable penetrance of abnormal phenotypes in embryonic
            lethal knockout mice
  JOURNAL   Wellcome Open Res 1, 1 (2017)
   PUBMED   27996060
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Dec 22, 2021 this sequence version replaced XM_003750935.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.66286.1,
                                           SRR26643284.14126.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-546               JAXUCZ010000010.1  86861884-86862429
            547-705             JAXUCZ010000010.1  86866215-86866373
            706-904             JAXUCZ010000010.1  86867784-86867982
            905-1021            JAXUCZ010000010.1  86868631-86868747
            1022-3282           JAXUCZ010000010.1  86869864-86872124
FEATURES             Location/Qualifiers
     source          1..3282
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q31"
     gene            1..3282
                     /gene="Rundc1"
                     /note="RUN domain containing 1"
                     /db_xref="GeneID:303552"
                     /db_xref="RGD:1307490"
     exon            1..546
                     /gene="Rundc1"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..1887
                     /gene="Rundc1"
                     /codon_start=1
                     /product="RUN domain-containing protein 1"
                     /protein_id="NP_001385698.1"
                     /db_xref="GeneID:303552"
                     /db_xref="RGD:1307490"
                     /translation="MATVEVATELGTVVTAVGPKAKDEEEEEDEEESLPPCETVRWAP
                     VGAVAEAGPGAATFSEEAAAEEPGAAPGSPPDATVRTLRRLQAERRQLDSALLALSSH
                     FAQVQFRLRQVVRGAPAEQQRLLRELEDFAFRGCPHVLGYEGLEDPCDSEESDVLPGD
                     RPRVRGEVQSEQEKRERLETQREKQKELILQLKTQLDDLETFAYQEGSYDSLPQSVVL
                     ERQRVIIDELIKKLDMNLNEDISSLSTEELRQRVDAAVAQIVNPARVKEQLVEQLKTQ
                     IRDLEMFISFIQDEVGSPLQTGGHCECKTSGKAGISSTRAGSSTLPPGPDKAKAEDTK
                     WVRETGLHLMRRALAVFQIFAVSQLGCATGQIPQTLWQRGQADRDYSPLLKRLELSVD
                     RVKQLALRHQPHDHVITSANLQDLSLGGRDELTMAVRKELTVAVRDLLAHGLYASSSG
                     MSLVMAPIACLLPAFSSAPETMHPWELFVKYYHAKNGRAYVESPARKLSQSFALPIMG
                     DAAVTPKQSLLTAIHLVLTEHDPFKRSADSELKALVCMALNEQRLVSWVNLICKSGSL
                     IEPHYQPWSYMAHTGFESALNLLSRLSSLKFSLPVDLAVRQLKNIKDAF"
     exon            547..705
                     /gene="Rundc1"
                     /inference="alignment:Splign:2.1.0"
     exon            706..904
                     /gene="Rundc1"
                     /inference="alignment:Splign:2.1.0"
     exon            905..1021
                     /gene="Rundc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1022..3282
                     /gene="Rundc1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagggggcgc aactgacgtg cggcggcgtt tccgggaaga tggcgacggt ggaagtggct
       61 acggagctgg gaacagtagt gactgctgtc gggcctaagg cgaaggacga ggaagaagaa
      121 gaagacgagg aggagtcgct gccaccatgc gagactgtgc gctgggctcc tgtgggggca
      181 gttgccgagg ccggtcctgg ggcggcgacg ttctcggagg aggcggcagc cgaagagcct
      241 ggagcggctc cgggctctcc tccggacgcg actgtccgca cgctgaggcg gttgcaagcc
      301 gagcggcggc agctggattc ggccctgctc gcgctgtcct cgcacttcgc gcaagttcag
      361 ttccgcctgc gccaggtagt gcgcggggcg ccggcggagc agcaacgtct cctgcgcgag
      421 ctcgaagact ttgccttccg cggctgtcct cacgtcctag gttatgaggg gctggaagac
      481 ccttgtgaca gtgaagaaag cgatgtgctg ccgggggacc ggccacgggt gcgcggcgag
      541 gtccagagtg aacaggaaaa acgggagcgc ctggaaactc agagggagaa gcagaaggaa
      601 ttgattctgc aactcaagac ccagcttgat gacctggaaa cctttgctta tcaggagggt
      661 agttatgact ccttgccaca gtccgtggtc ttggaaagac agcgggtgat catcgatgag
      721 ttaataaaga aactggacat gaatctgaat gaggacatca gttccctgtc caccgaggag
      781 cttcgacaac gtgtggatgc agcggtggct cagattgtca acccagctcg ggtgaaagag
      841 cagttagtgg aacagctgaa aacccagatc cgggacctgg agatgttcat cagcttcatc
      901 caagatgaag tgggaagccc tctgcagaca ggaggacact gtgagtgcaa gaccagcggg
      961 aaggcaggaa tcagttccac cagagcaggc agcagcacac tgcccccagg gcctgacaaa
     1021 gcaaaggcag aagacacgaa gtgggtccgg gagacagggc tgcacctgat gcggcgagcg
     1081 ctggctgtgt tccagatctt cgctgttagc cagttgggct gtgccactgg ccagatccct
     1141 caaaccctgt ggcagagggg ccaggcagac agagactact ccccattact gaaaagactg
     1201 gaactatcag tagacagagt aaagcaacta gccctgagac atcagccaca tgaccatgtc
     1261 atcacctcgg ccaacctcca ggacctctct ctgggaggca gagatgagct gaccatggct
     1321 gtgcggaagg agctgacagt ggctgtgagg gacctgctgg cccatggact atatgcttcc
     1381 tcctctggga tgagccttgt catggccccc attgcttgtt tgttgccagc tttctcctca
     1441 gcccctgaga ccatgcaccc ctgggagctc tttgtaaagt actatcatgc caagaatggc
     1501 cgtgcatatg tggaatcccc agcccggaag ctctcacagt ccttcgctct gcctataatg
     1561 ggtgatgctg ctgtgacccc caaacagagc cttctgacag ccatccacct ggtgctgaca
     1621 gagcatgacc ctttcaagcg cagcgctgac tcggaactga aggcattggt gtgcatggca
     1681 ctgaacgagc agcgcctggt gtcctgggta aacctcatct gcaagtcggg gtccctcatc
     1741 gagccccatt accagccctg gagctacatg gcccacacag gttttgagag tgccctcaac
     1801 ctgctcagcc gcctcagcag cctcaagttc agccttcctg tcgacttggc cgtgcgccag
     1861 ctcaaaaata tcaaagatgc cttttgatga gaaggcctaa ccttagcccc cacacacctt
     1921 gctctggaga tgtagatgtc ctagaattgt agattaaaag ctagggagtc cgaggaatgg
     1981 ttagagacag tttttttaga ccctttctag acccttcagg tggtcagcta atggtagcaa
     2041 agcctacttt tctctttgaa gtttagaaag atgtgacaga gagtctcagc aaaaatagtg
     2101 ctggggcctg agagaaggtt cgccaggtaa agatgctgct gtcacacctg gcaatctgag
     2161 tggtacaggg agagcaaagc tcccactaac tatcctctta cctccacaca tgaactctgg
     2221 aacatgtcaa ttcctgccca aacacaagta agtgtaataa taaaatccaa aaaataacag
     2281 tatcaggact agagatgtag ctcagtggtg cggtgtgtgc aaagcatgca cagccagtgc
     2341 tgaggatgct aaaagcaaca gaagaagctg acccaagccc accacagtgt gcctggccca
     2401 ctgttggagc ctgcggtaac aaaatcagtt accacacagc taatgcccaa ctcaccgtgc
     2461 catgtctgat ttttagaaaa tgcaggttca cccttctctt caccgcagca acttgctgtc
     2521 tagggagttc tggaagacac tgaccttgag gctcctgcta ggaagaatct ttatcagagc
     2581 agctttgagg gcgctagggc cagcactgta attccagtta tgaattctga ttcccctttg
     2641 ttctgaggga gttgttatga gaaggaagtc tccctgctga ggtgatcctc acactcagtc
     2701 agcactcctc tcattataaa gaaagacagc tgatgtcctt cctgtgctgt ttcgggaaag
     2761 tcactttctt ctgtgggcct ctcatgactg acagtctcag aagtgaaagc attcagaaga
     2821 attcctgtca gtcaggagca cacagcactc atggtgatga gttccactca ttggtgcaac
     2881 ttgtcctgga gactggaggt ttgatttcgc agtgtgcaca gtggcagggc ctgcatgact
     2941 gtgaaggtga ctccctcatc attcagtttg cagagggcac ttgctccagg actcactgaa
     3001 gatgggtgaa ccaaactgcc acatgtactt tgttcccgtg aagtgccctt tgccttgttt
     3061 cggcaatgtg tcacttgaga ggcatcatgg acacttagtg tttcccaggg tttgggcttg
     3121 gaatgggctc tgtggtagag tgcttgcctg gtaaatcctt agcaccaacc ccaggagaca
     3181 aaagataatt gtaaaatatc atgaataatg atatatctgt gattgttaat aaagtttcag
     3241 tattttgggt agcttctctg caaagcccat agctcctcct ca
//
