LOCUS       XM_039084635            6998 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RUN and FYVE domain containing 4
            (Rufy4), transcript variant X1, mRNA.
ACCESSION   XM_039084635
VERSION     XM_039084635.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6998
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6998
                     /gene="Rufy4"
                     /note="RUN and FYVE domain containing 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 long SRA reads, 1 Protein, and 98% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     9 samples with support for all annotated introns"
                     /db_xref="GeneID:301510"
                     /db_xref="RGD:1560678"
     CDS             528..2315
                     /gene="Rufy4"
                     /codon_start=1
                     /product="RUN and FYVE domain-containing protein 4 isoform
                     X1"
                     /protein_id="XP_038940563.1"
                     /db_xref="GeneID:301510"
                     /db_xref="RGD:1560678"
                     /translation="MAEKETILKISRNLKSELPWEVFLWLSCRRGFSSGLAPSWLSTI
                     LLPDAVSAILQGYGDGQGPVTDTSAELHRLCGCLELLLQFDQKEQRSFLGARKDYWDF
                     LFTALRRQRGYTEQMNFICSQDKLKTSLGKGRAFIRLCLAHGQLAESMQLCLLNPQLT
                     REWYGPRSPLLCPELQGDILDSLYTLNGVAFNLDLQRPDLDEAWPMFSESHYSSPSRT
                     RERRPRKPKGFPEEVRCSKGQQLQGPEAGGTSCLQDATTEDLPPDLRTPLQQDHLPTF
                     LEEKREDSRSLSCPQSIWETGREGFRLDQEGGPKTRKLLENSTASIQQQKGGAKDVQM
                     QLTGRKDEGKGSLPGTEGRKTTEGIQERATDWNHAQELLAPSLQGREEDAELGYRHGW
                     DQPGALGQSWVLGSKKGPTTGKPQEWTGVTRATVQKDQTEVPLQQEVIKEPGYGLQLT
                     EVQAQCQEQLQAQEGELQALQEQLSRCQEERALLQAMLEQKQQEAERRAAMYEKELEG
                     QRDLVQAMKRRVLELIQEKDHQWQRLQQLSTVTPGHCMGCNKVFRRLSRRYPCRLCGG
                     LVCHACSVDYKKRERCCPACAQQEEIQVT"
ORIGIN      
        1 ggtggccatt tgccttctct ccccacctgt gccacttcca gtccaatgac agaagagaca
       61 actcgagggg gaaaaacaaa aaagaaaacc gagcccccta gcgtttcagt cagcctctct
      121 ccgccatcta ctggcaacaa gacagaaaga caagagcagg tgccagggaa aggaagcccc
      181 tatccttgtt gcgtttgtgt ttgagacacc aactggcctt atgccagatg agcttgaagg
      241 agccgctcat tctgcctctg tgccctcgat ctttctctac tacttctccc tggccaagac
      301 tagtccagcc ccctccaggc tgggcctgag tcactcccca ggcaggagaa ctgggaaaga
      361 ctgcagagcc cacagtcaca agggacatat tcaggcaaca gaatcctcct gcccacatcc
      421 caaccagaca ggcttttccc agtctagacc ctcacccatc tgtatgtaag gaaagcaagc
      481 agccgagccc agagaatcac aggaggtcac cttactttca agtctccatg gcagaaaagg
      541 aaaccatcct caagatcagc aggaacttga aaagtgagct gccctgggag gtttttctgt
      601 ggctaagctg taggaggggt ttctcctcag gcctggctcc ctcatggctc tctaccatcc
      661 tcctcccaga tgctgtctct gccatcctcc agggatatgg ggacgggcag gggccagtga
      721 cagacacaag tgccgagcta cacagactct gtggctgcct ggagctgctc ctgcagtttg
      781 accagaaaga gcagaggagc ttcctggggg ctcggaagga ttactgggac ttcctgttca
      841 ctgcccttcg gcggcagcgg ggatacacag agcagatgaa cttcatatgc tcacaggaca
      901 agctgaagac ctcgctagga aaaggccgtg cctttatccg actctgcctt gcccatggac
      961 agctggctga gtccatgcag ctgtgcctcc tgaacccaca actcaccagg gaatggtatg
     1021 gccctcggag ccctctgctg tgccctgagc tccagggaga catcttggac tctctctata
     1081 ccctcaatgg agttgccttc aacctggacc tgcaacggcc agacctggat gaagcctggc
     1141 ccatgttctc agaatcccac tattccagtc ccagccggac ccgggaaaga agacccagaa
     1201 aacccaaagg ttttccagag gaggtgagat gctccaaggg acagcagctg cagggaccag
     1261 aggctggagg aaccagctgt cttcaagatg caaccacaga agacctccca cctgacctcc
     1321 gtaccccctt gcagcaagac catcttccca cctttctgga agagaagagg gaggattcca
     1381 gaagcctcag ttgtccccag agcatttggg aaacaggaag ggaaggattt cggctagacc
     1441 aggagggagg cccaaagacc aggaaattgc tggaaaactc aacagccagc atccagcaac
     1501 agaagggtgg ggctaaggat gttcaaatgc agctgacagg aaggaaagat gaaggaaaag
     1561 gaagtctgcc agggacggaa ggtcggaaaa caacagaagg gatccaggaa agggcaacag
     1621 attggaacca tgcccaggag ctgctggccc ccagccttca gggaagggaa gaagatgcag
     1681 agttgggata caggcatggg tgggatcagc ctggtgctct ggggcaatcc tgggtcctgg
     1741 gatcaaagaa aggtcccacc acagggaagc cacaagagtg gacaggagta acccgtgcaa
     1801 ccgtgcagaa ggatcaaaca gaagtgccct tgcagcagga ggtgatcaag gagcctgggt
     1861 acggcctcca gctgacagag gtacaggccc agtgtcaaga gcagctgcag gcccaggaag
     1921 gagaactaca ggcactccag gagcagctca gcaggtgtca ggaagaaaga gccctgctac
     1981 aagcaatgct ggaacagaag cagcaggagg ctgagaggag ggctgccatg tatgagaagg
     2041 agcttgaagg acagagggac ctggtccagg ccatgaaaag gagggtgttg gaactgattc
     2101 aggagaagga ccaccaatgg cagagactcc aacagctgtc tactgtgacc cctggacact
     2161 gcatgggctg caacaaggtc tttaggcggc tgtctcggcg gtatccttgc aggctctgtg
     2221 gaggcctggt ttgccatgcc tgctctgtag actacaagaa gagagagcgt tgctgcccag
     2281 cctgtgccca gcaggaagaa atccaggtca cctgaccaag atagcacaag gaacctaaga
     2341 ccagccagcc caccagctca ctctcgtcat tcctcttccc aaccctggtg tctgactact
     2401 tttctcttct gggagctggt gagctgtgac cccagcactg ctgtggagga ccagagggaa
     2461 cagctggcag tccacagaga ggcctagctc tgcctttctc gtgcaagggg ctgagtggaa
     2521 tgtgcccaca gctctagaag cattgtgtct gatgaggaag acatgctgta acctctttgt
     2581 aaagtccctt gaagcacagt gagtcatgac catgaataag agcagcccag ggctcagctg
     2641 tttccaagcc acactctccc tcccccatca cctataagga gggaagccca aattcactgg
     2701 gctcttcagg aaccttccct ctgatctcct tccaggatca ttgtcttgtc tcatgtctca
     2761 cagatttact gacgtgtggt tgacatataa aaacattgtg taagtatgat gagtttttaa
     2821 ctttaataca cacctataaa gccatctcca aacacaggca tcagatccaa ggcttccgca
     2881 accgtcctcc agctcccgcc tccatgccga ggcaaccact gaccctgcct catattacct
     2941 ggaagcacag ccgcttccta gaaatctgta gtagaaatga aattgtacag ttcactctat
     3001 tattgctacc tcaacactgc ataattggtt tgagatttgt ctaagtattg tgtgcacctc
     3061 tggttctttc ctacagtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
     3121 tgtgtgtgtg acatgtacgc attcaacatt catgattcat atgaaggtca gaggacaact
     3181 cgttggagcc agctctttcc ttccaccatg tcatccccag caaggaattg gctttaagaa
     3241 tccatacatg tatcaaaatc cctgtaggta ccaaactccc agacagtcaa gaaagacttt
     3301 tattacatat aaccagtgcg cagtttcata catggtttaa accaattcca gattactgaa
     3361 aatgccaaat ttgttataaa tgctatataa actttctact gtgttgtttg gggaacaact
     3421 acaagaaaaa gtctgaacat gtccagtgta gatataattt ttcaaatata ttttccacct
     3481 gtagccatga atgcagaaat catgaacgct gaccccatgg atacaagggg gccaactata
     3541 ttttcctaaa tggtttgtgt tctactgtcc catatgtccc atgtgtctac atatgagagt
     3601 tccagctact ctttgggaca tccggctttg ctgtgcagaa gaggcatggg gcacagggcg
     3661 tgctgtcttt tcctttccgt tgttatgatg acttgagtac actctgtgta cctggaactc
     3721 agtcccagtg actcagtatt ggagtttgct tagtcagacc ctgatagaca ggagatgagt
     3781 tgatcttgag taagatcatt tcccctgaag tctctgagaa gatttatgta aaccgtgttg
     3841 ttcatttact aggcactaac tgcagcactt ctgagaaatc tgttatagaa gaaacgtggg
     3901 ctcactctgt aacaaggcaa ttatctgccc tacctagcct ctagagaaca ctgtgaacac
     3961 tagacaggca ttcatgctat ccctgtccat gctgcagaag cctctgtaat gcttgggcaa
     4021 tgccatggct tcaagcagag cctggagaca gcctctaagg gtcttatctg cctagcattg
     4081 catcctattg cttgcatgga gtaagaattt agcagtgggg ggctggggat ttagctcagt
     4141 ggtagagcac ttacctagga agcgcaaggc cctgggttcg gtccccagct ccgaaaaaaa
     4201 aaaaaagaac caaaaaaaaa aaaaaaaaag aatttagcag tgggacttct gccttggaac
     4261 actggtaaga acttgctctc agcagataca gttacaaagt ggtggacaaa ggaggctccc
     4321 acaaacaact gaggtaccag aatcatcctc aaagagtgtt ctcctttctg gaggttggcc
     4381 tgaccagagc agagtttgta accttttagc aggaattcca gtatggattc cagccttcct
     4441 cataagcaga tgaagttaga gtaacagtag aagccatttt tctaagagaa agagaggtgc
     4501 tctggaaatg aactctcaca ggaaggattt gtaggtgggc aatggggagc ttgcttgagc
     4561 tcccttattc aagcaaacga aaaaccacgc gtagtcctag ccttcaggtc ggcaaactag
     4621 ctgaagagga agtagaaagt tttcctagac tttgggggat cctttaaagg ggagtcccac
     4681 agtggtcacc atagaccacc ccagatcctg tccctgcaag aatcgcagtc ttgcagcagt
     4741 ggctttaagg accataccga atcacagcag ccccgacagg gacacgtggg ggaagtctcc
     4801 agtgagggtc cagagtagca ctccaaagag gctggagccc tgcttgagca tacagggtct
     4861 gatgatgagg tcagcgttgt ccagacttca tttgtgctac tgagctggag aggctctgag
     4921 aggtttgcag cacgtcaagc tgtggggtat tctcaagtcc accagccccc aaccccaacg
     4981 ttaccaacat taccaatttg tcagtgcacg cacacacaca cacacacaca cacacacaca
     5041 cacacacaca cacacacaca tgcatgaatt actcatacgt tcatcacact gtgattcatt
     5101 tgggaagaca gaagcagacc cacagctgaa gtccttgctt tcaagatgca aagggacaaa
     5161 ccgccaggtg attgattaca agacctagac tgaacatgga agcaaaaggg agaatacgat
     5221 cagagggctg gaagggtacc ccaaggaaag ggagtacatg caagctccac ccccaccccc
     5281 aaaatagaat aactcctggg gctccacatg gggttctcag aggttgaaga gttcaaagtg
     5341 tggccagaag taataggggt cagccatcag ggctgacttc aactaaggct gttgagggtc
     5401 cttaaaggtt ttaaagagga atgcagagtc agcacgatct tcctcgctgc agaatatatg
     5461 atgggttgaa gggaaagact tgaggcagcc atcatggagg gtgcaagaaa acggaggagg
     5521 aagaggtaga ggaggaggag gagctgaaca tcattctaaa tgcttcacag agacttgttt
     5581 gtccctgtaa caaccatggg cagtagccat tctcatgttg cccattatat gaatggagaa
     5641 actaagagtc agtgagatca gattgctagc tgtaggtgta tgaccctgga gcaaggtgaa
     5701 ttctaactca gtcagcccag ctctggaacc cacaagcatt gcataactac tgatgtagtt
     5761 taggaaagag aggatgaagt gttgactaac cctgcctgtc tgggaaggtg gtataagaag
     5821 ataagcaaga ggaaagagag gaggaatggg ggtggggtgg cagaagggca ggggagaagt
     5881 ccacagaact gtcaggcatc cagagtgagt gtggtgaagc tctggcaaag gttctcaacg
     5941 tgtgggtctt gaccccttta ggtggctaaa tgaccctttc acaggagtca tacatacatc
     6001 agatatcctg catatcagac atttacatta caattcataa cagtggcaga atgacagtta
     6061 tgagggatca gcaaaaataa ttttatgatt ggagatcacc agaagatgag gaactgaaag
     6121 gagcacaagg gttgcagcat taggaaggtg gagaaccact gatctaggcg tattgagttt
     6181 gaggagctga agggagactg caggtgacca gtacacatgg tgttggggcc tagaaaggaa
     6241 gctggggaca ataggttcta aagacactgt cccgtggttc tagctgaagc cacagaggct
     6301 ggcagactca ccgtgagagc tgacagactg agaagaccaa ggtaaaacct caaggcagat
     6361 ggcacacatt accaagggta aatgtgaaga gaacaagccg acgggactca gttgtgtaga
     6421 aatgaaagat gtgaacgtca ctttcaccgt aaagttcaaa agcatccagt agactcagtg
     6481 gagtaactca gcagtagagt tcctgaagta tgtggagctc tgacttcagt cgacagcctc
     6541 aaaataaaca gaactgctga gacactcagc cagtggaagc actcatggcc aagcctgacg
     6601 acctaggttt gatccctgga tcacgcctag aggaggaaga tcagctccca tagtttgtcc
     6661 tctgactccc atgcatgtgc tgtgtgacac acatgtgcct ctcacacaaa acaagagcat
     6721 gtagaaatga tttaaataaa taaaccaggg gttggggatt tagctcagtg gtagagcact
     6781 tgcctagcaa gcgcaaggcc ctgggttcgg tccccagctc aaaataaata aacaaacaaa
     6841 caaacaaaca aacaaaccaa aagcacggca agctgagagg aggttaggtt aacatgtcta
     6901 acagatgttc aaaacgttat actcacaagt tatgtagagt ttccacaaag caatgaccaa
     6961 aaaaaaaaaa aatcataatc cactgcaaaa agaaaaca
//
