LOCUS       NM_001168586            1915 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus RUN and FYVE domain containing 2 (Rufy2), mRNA.
ACCESSION   NM_001168586 XM_001072800
VERSION     NM_001168586.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1915)
  AUTHORS   Yang,J., Kim,O., Wu,J. and Qiu,Y.
  TITLE     Interaction between tyrosine kinase Etk and a RUN domain- and FYVE
            domain-containing protein RUFY1. A possible role of ETK in
            regulation of vesicle trafficking
  JOURNAL   J Biol Chem 277 (33), 30219-30226 (2002)
   PUBMED   11877430
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Dec 13, 2009 this sequence version replaced XM_001072800.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643291.43330.1,
                                           SRR26643429.57675.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-70                JAXUCZ010000020.1  25656775-25656844   c
            71-244              JAXUCZ010000020.1  25654003-25654176   c
            245-362             JAXUCZ010000020.1  25650185-25650302   c
            363-464             JAXUCZ010000020.1  25648713-25648814   c
            465-588             JAXUCZ010000020.1  25646521-25646644   c
            589-650             JAXUCZ010000020.1  25645629-25645690   c
            651-716             JAXUCZ010000020.1  25645050-25645115   c
            717-786             JAXUCZ010000020.1  25644404-25644473   c
            787-888             JAXUCZ010000020.1  25641971-25642072   c
            889-1005            JAXUCZ010000020.1  25641758-25641874   c
            1006-1173           JAXUCZ010000020.1  25639584-25639751   c
            1174-1271           JAXUCZ010000020.1  25637402-25637499   c
            1272-1391           JAXUCZ010000020.1  25634964-25635083   c
            1392-1521           JAXUCZ010000020.1  25632742-25632871   c
            1522-1616           JAXUCZ010000020.1  25631745-25631839   c
            1617-1665           JAXUCZ010000020.1  25629860-25629908   c
            1666-1743           JAXUCZ010000020.1  25627913-25627990   c
            1744-1915           JAXUCZ010000020.1  25627518-25627689   c
FEATURES             Location/Qualifiers
     source          1..1915
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20q11"
     gene            1..1915
                     /gene="Rufy2"
                     /note="RUN and FYVE domain containing 2"
                     /db_xref="GeneID:690777"
                     /db_xref="RGD:1592188"
     exon            1..70
                     /gene="Rufy2"
                     /inference="alignment:Splign:2.1.0"
     CDS             67..1887
                     /gene="Rufy2"
                     /note="RUN and FYVE domain-containing protein 2-like"
                     /codon_start=1
                     /product="RUN and FYVE domain-containing protein 2"
                     /protein_id="NP_001162058.1"
                     /db_xref="GeneID:690777"
                     /db_xref="RGD:1592188"
                     /translation="MATKDPTAVERANLLNMAKLSIKGLIESALSFGRTLDSDYPPLQ
                     QFFVVMEHCLKHGLKVRKSFLSYNKTIWGPLELVEKLYPEAEEIGASVRDLPGLKTPL
                     GRARAWLRLALMQKKMADYLRCLIIQRELLSEFYEYHALMMEEEGAVIVGLLVGLNVI
                     DANLCVKGEDLDSQVGVIDFSMYLKNEEEIGNKERNVQIAAILDQKNYVEELNRQLNS
                     TVSSLHSRVDSLEKSNTKLIEELAIAKNNIIKLQEENHQLRSENELILMRTRQHLEVT
                     KVDVETELQTYKHSRQGLDEMYDDARRQLRDESQLRQDVENELSVQVGMKHEIELAMK
                     LLEKDIHEKQDTLIGLRQQLEEVKAINIEMYQKLQGSEDGLKEKNEIIARLEEKTNKI
                     TTAMRQLEQRLQQAEKAQMEAEDEDEKYAQECLSKSDSLQRQISQKEQQLVQLETDLK
                     IEKEWRQTLQEDLQKEKDVLSHLRHETQKIISLKKEFLNLQDENQQLKRIYHEQEQAL
                     QELGSKLCESKLKIDDIKEANKALQGLVWLKDKDATHCKLCEKEFSLSKRKHHCRNCG
                     EIFCNACSDNELPLPSSPKPVRVCDSCHAMLIQRCSSTVP"
     exon            71..244
                     /gene="Rufy2"
                     /inference="alignment:Splign:2.1.0"
     exon            245..362
                     /gene="Rufy2"
                     /inference="alignment:Splign:2.1.0"
     exon            363..464
                     /gene="Rufy2"
                     /inference="alignment:Splign:2.1.0"
     exon            465..588
                     /gene="Rufy2"
                     /inference="alignment:Splign:2.1.0"
     exon            589..650
                     /gene="Rufy2"
                     /inference="alignment:Splign:2.1.0"
     exon            651..716
                     /gene="Rufy2"
                     /inference="alignment:Splign:2.1.0"
     exon            717..786
                     /gene="Rufy2"
                     /inference="alignment:Splign:2.1.0"
     exon            787..888
                     /gene="Rufy2"
                     /inference="alignment:Splign:2.1.0"
     exon            889..1005
                     /gene="Rufy2"
                     /inference="alignment:Splign:2.1.0"
     exon            1006..1173
                     /gene="Rufy2"
                     /inference="alignment:Splign:2.1.0"
     exon            1174..1271
                     /gene="Rufy2"
                     /inference="alignment:Splign:2.1.0"
     exon            1272..1391
                     /gene="Rufy2"
                     /inference="alignment:Splign:2.1.0"
     exon            1392..1521
                     /gene="Rufy2"
                     /inference="alignment:Splign:2.1.0"
     exon            1522..1616
                     /gene="Rufy2"
                     /inference="alignment:Splign:2.1.0"
     exon            1617..1665
                     /gene="Rufy2"
                     /inference="alignment:Splign:2.1.0"
     exon            1666..1743
                     /gene="Rufy2"
                     /inference="alignment:Splign:2.1.0"
     exon            1744..1915
                     /gene="Rufy2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccgctgcccg cctgcggaga gctgctgacc tgctccgcgc acccgtgtcc cgcactcatc
       61 gccgccatgg ctacaaaaga ccccacggct gtggagagag ccaatttgtt aaacatggcg
      121 aaactaagca tcaaagggct cattgagtcc gccctgagct ttggccgcac cctggactcc
      181 gattaccctc ctctgcagca gttcttcgtg gtgatggaac attgtctgaa gcacggcctg
      241 aaagtaagaa aatccttttt gagttataac aaaactattt ggggccctct ggaactggtg
      301 gagaagctgt acccagaagc agaggaaatc ggagcgagtg tccgggatct gcctggtctt
      361 aagactcccc tgggtcgtgc tagagcgtgg cttcgattag ccctcatgca gaaaaaaatg
      421 gccgattacc tgcgttgcct aattatccag agggagctcc tgagtgagtt ctatgagtac
      481 cacgcactga tgatggagga ggaaggagcc gtgattgtcg ggctgctggt cggcctgaac
      541 gtgattgatg ccaacctgtg tgtgaaggga gaggacctag actcccaggt tggagtgatt
      601 gatttctcaa tgtatttaaa gaatgaagaa gagattggaa acaaagaaag gaacgttcaa
      661 attgctgcca tcttagacca aaagaattac gttgaagagc taaacagaca actcaacagc
      721 accgtcagca gcctccattc aagagtggac tcgttagaga agtcaaacac taagctgatc
      781 gaagagttag caatagcgaa gaataatatc ataaagctcc aagaggaaaa ccaccagtta
      841 cgtagtgaaa atgagttgat cttaatgaga actcggcagc acctagaggt taccaaagtg
      901 gatgtagaaa ccgagcttca aacatacaag cattcccgac aaggtctaga cgagatgtat
      961 gatgacgcca gaaggcagct tcgagacgag tcgcagctcc gacaggatgt ggagaatgag
     1021 ctatcagtac aagttggcat gaagcatgag atcgagctgg ccatgaagtt gttggagaaa
     1081 gatattcatg agaaacaaga cactctcata ggccttcggc aacagctgga agaagtcaaa
     1141 gcaatcaaca ttgagatgta tcaaaagctg cagggctctg aagatggctt gaaagaaaaa
     1201 aatgaaataa ttgccagact agaagaaaag accaataaaa tcactacagc catgaggcag
     1261 ctggagcaaa gattgcagca agcagagaag gcgcaaatgg aagctgaaga tgaggatgag
     1321 aaatatgccc aagagtgtct gagcaaatcc gacagtctgc agagacagat ctcgcagaag
     1381 gagcaacagc tggtgcagct ggaaacggac ttgaagattg agaaggaatg gaggcagact
     1441 ttgcaagaag atcttcaaaa ggaaaaagat gtcctatctc atcttagaca cgaaacccaa
     1501 aaaatcataa gtcttaaaaa agagtttctt aacctccagg atgaaaatca gcagttgaaa
     1561 agaatatatc acgaacaaga acaggctctg caagaacttg gcagcaaact ctgcgaatct
     1621 aaacttaaaa tagacgatat aaaagaagcc aacaaagcat tgcagggact ggtctggcta
     1681 aaagacaaag atgcaaccca ctgtaagctt tgtgagaagg aattttcact ctccaaaaga
     1741 aagcaccact gtagaaattg tggggaaatt ttctgtaatg cctgttctga caacgagctg
     1801 ccattgcctt cttcaccaaa gcccgtgcgc gtctgtgatt cctgtcatgc aatgctcatt
     1861 cagagatgct cctctactgt gccgtgacat aggaactcaa tgctcctgca cagaa
//
