LOCUS       XM_008770905            3118 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus rubicon like autophagy enhancer
            (Rubcnl), transcript variant X1, mRNA.
ACCESSION   XM_008770905
VERSION     XM_008770905.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008770905.3.
            
            On Jul 26, 2016 this sequence version replaced XM_008770905.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3118
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3118
                     /gene="Rubcnl"
                     /note="rubicon like autophagy enhancer; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 ESTs, 7 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 70 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:290403"
                     /db_xref="RGD:1304929"
     CDS             174..2219
                     /gene="Rubcnl"
                     /codon_start=1
                     /product="protein associated with UVRAG as autophagy
                     enhancer isoform X1"
                     /protein_id="XP_008769127.1"
                     /db_xref="GeneID:290403"
                     /db_xref="RGD:1304929"
                     /translation="MNSRITPSGTTAIGELSFEHVHSTPGKMVSQSTGQQDYPMDSCE
                     RTSHAFQDADGLPSVLDTDQPACQLDVRLVRHKASWINPLCVQQPLRESGLQRPTAQN
                     SENHVVVDTPSPSDLSILPQRDSLAEMSLSENTADVICNSSAYCSWGEKGDFFLATEE
                     QEAHPQQKSLLKNPKAVATSPFSKASVHSESPHLTASTDDGDAQSSRSHSWNFFPLET
                     FILPADMEKENVHFYAADLIISVIENLKCSLLSQQQPGSSGTEEASRSCGTGAEVTFH
                     THAKQEPDPSASSHTGCEGCAALQVSPVAEALSYCPVAIEACTLDLNKLVILELGKSN
                     DLTEGCRGSYSSSESATCKSNLSLAGLLARELFRGFYKYWMLSEEVTRQPPGSLIPAS
                     SGVGEEEQAEEELDSSVDTAREVMLKSRVPGTEDWVPPPCQIILTVHPPVKRDIAVVA
                     QNFFCAGCGTPIQPKFVKRLRYCEYLGKYFCDRCHSSAESCIPARILLMWDFRKYQVS
                     DFSKWLLDSIWHQPIFNLLSGHHSLYAKVKELDRVKDIQEQLFHIKKLLKTCRFADSV
                     LKEFEQVPSHLTDECHMFSMDDFLRTKKGLLAPLLKDILRASLAHVDSCELCQGKGFI
                     CEFCQSTTVIFPFQTMTCRRCAGCRACFHKQCFQSSRCPRCARIIARRQHSESLTGT"
ORIGIN      
        1 gtgaaaactt tctgtattcg ttggcagctc ctctcggcac catcagaagt tcagagttgg
       61 cacaccgaag aagtgatccg gacctgtcac taccacgagg caaggtggct attaggtgga
      121 taaaacggcc aggagacgta gataaactta tcagacctct agctggccat gtgatgaatt
      181 caaggatcac acccagtggt acaacggcca ttggagaact gagttttgag cacgttcact
      241 ccacacctgg aaagatggtg tcccaatcca caggccagca agactatcct atggactcct
      301 gtgaaaggac cagccatgcc tttcaggacg ctgatggctt gcccagtgtc ctggacactg
      361 accaacctgc ttgccagtta gatgtgagac tcgtaagaca caaagcttcc tggatcaacc
      421 cactgtgtgt gcagcagcca cttcgagaat caggcctcca aagaccaacg gcgcagaaca
      481 gtgagaacca cgtggtcgtg gacactccct ctccctcgga cctttcgata ttgccccaga
      541 gggactccct ggctgagatg tcattgtctg agaatactgc tgatgtcatc tgcaacagct
      601 ctgcttattg ctcctgggga gagaagggtg acttcttcct ggctacagaa gagcaagagg
      661 ctcatcctca gcagaagtct ctgctcaaaa accccaaggc tgtggccact tccccattct
      721 ctaaggccag tgtccattct gagtctcctc atttgacagc ttctacggat gatggtgatg
      781 ctcagagcag caggagccat tcttggaatt tcttcccact ggagacattc attctgcctg
      841 ctgacatgga aaaggaaaac gtccactttt atgctgcaga cttgatcatc tcagtaatag
      901 agaatttgaa gtgcagtctt ctgagtcaac agcagccagg gagttcgggc acagaagagg
      961 ccagcaggtc atgtgggact ggagcagaag tgacctttca tacccatgca aagcaggagc
     1021 cagacccctc cgcttcttca cacactggct gtgaaggttg cgctgcactc caggtcagcc
     1081 cagtggctga ggcactttct tactgtcctg tggcgataga ggcctgcaca cttgacttga
     1141 acaaattggt catattagaa cttgggaaat ccaatgacct cacggaaggc tgcagaggct
     1201 cctatagctc ttcagagagt gcaacttgca agtcgaatct cagtcttgct gggctcttag
     1261 ccagagagtt gttccgaggg ttctataagt actggatgct gtcagaagaa gtcactcgtc
     1321 agcctccagg ctccctgatc cccgctagct caggagttgg ggaagaagaa caagctgagg
     1381 aagagcttga ctccagtgtg gatacagcac gggaagtcat gcttaagtcc agggtcccag
     1441 ggactgaaga ctgggtgccc cctccatgcc aaatcatact tactgttcac ccgccagtca
     1501 agagggacat agcagtcgtg gcccagaatt tcttctgtgc tggatgtggg actcccatac
     1561 aacccaagtt tgtgaagcgg ctccgatact gtgagtacct cgggaagtac ttctgtgaca
     1621 gatgccactc atctgcagag tcctgtatcc ctgctcggat cctgctgatg tgggacttca
     1681 ggaagtacca agtcagcgat ttctctaaat ggctactgga cagcatatgg catcagccca
     1741 tcttcaacct gttaagtggg catcacagcc tctatgcaaa agtcaaggaa ctggataggg
     1801 tgaaggacat ccaggagcaa ctttttcata tcaagaagct gttgaagact tgcaggtttg
     1861 ctgacagtgt gctgaaggag tttgaacagg ttcccagtca tttgactgat gaatgccaca
     1921 tgttctccat ggacgacttc ctcaggacca agaaaggact gttggcacct ttgctcaagg
     1981 acatcctgag agcttctctt gcccacgtgg acagctgtga gctgtgccag ggaaagggct
     2041 tcatttgtga gttttgccag agcacgactg tcatcttccc atttcagacc atgacttgta
     2101 gaagatgtgc agggtgcagg gcctgcttcc acaaacagtg cttccagtct tccagatgcc
     2161 ctcgctgtgc caggatcata gcccggagac aacattcgga gagcttaaca ggaacatgac
     2221 agcccaaagt tgttccaaac acctcatggt gatgccaaat tgtgtctgct cctggtaaca
     2281 ttgtttcaga tgctaagtat tttatagtaa gaaaaggaca accaaaattc ccctcttgta
     2341 tgtatttaat gctttcaagg agtatggaag ctttgttact aggtaaaggg ttgttgagaa
     2401 aggtttgttt acaaatgttt gacattgttt tgctgctgtt ggctggtttt ttttaagaag
     2461 tctttttttc atttacattg cactgggata gtttttttta agttaaatac agaacctatt
     2521 tttttatgaa ctgtaactga caaggtggct gtttaactct tcctcctcca gagttgtttg
     2581 gaatgtgaaa tggattggtg ccacaaggga gcgaaatgcc accagaattc tgtttggcca
     2641 agtttgtgtt aaagactaca ttgaatgttg ttttgcaact gtgtcagttt cctgttttat
     2701 tcattcctct ctagatgaca gtttcagccg ccacccacca aggtcccggt gaactgtcat
     2761 ttggagcagc tgcctctaga tggcactgtt tgatgagcga acgttcaacc actttgtcat
     2821 ctctgcctgt gctaaaaacc ttgggagcca gaggggacaa caccaatcta gcccttcatg
     2881 atctagcttc ctggatataa acaaacaaac aaacaaacaa acagacagac aaaatcagaa
     2941 catagagact ctgaaagctg agcatggtgg tgtgcacctg taatccctgc ctttaggaaa
     3001 tagaggcaga aattaagact ttctgtatga acatagaaaa ccacacacaa cctgtacttt
     3061 ttttttttaa attttaaaat aacggaattt taaaaacaag taaatttggg taaaataa
//
