LOCUS       XM_039088925            5413 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus rubicon autophagy regulator (Rubcn),
            transcript variant X5, mRNA.
ACCESSION   XM_039088925
VERSION     XM_039088925.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039088925.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5413
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5413
                     /gene="Rubcn"
                     /note="rubicon autophagy regulator; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 54
                     ESTs, 1 long SRA read, 1 Protein, and 97% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:303885"
                     /db_xref="RGD:1305422"
     CDS             213..3194
                     /gene="Rubcn"
                     /codon_start=1
                     /product="run domain Beclin-1-interacting and
                     cysteine-rich domain-containing protein isoform X5"
                     /protein_id="XP_038944853.1"
                     /db_xref="GeneID:303885"
                     /db_xref="RGD:1305422"
                     /translation="MRPEGAGMDLGGGGERLPEESRREHWQLLGNLKTTVEGLVSANC
                     PNVWSKYGGLERLCRDMQNILYHGLIHDQVCCRQADYWQFVKDIRWLSPHSALHVEKF
                     ISLHESGQSDTNSVSEHTVAELWLQHSLQCHCLSAQLRPLLGDRQYMRKFYTETAFLL
                     SGAHVTAMLQCLEAVEQNNPRLLAQIDASMFARKQESPLLVTKSQSLTALPGSAYTPP
                     TSCAQHSYFGSSSSLHQSMPPSHSSERRSTSFSLSGPPWQPQEDRECLSAAETQTTQA
                     PLLSDSALAQDSPLTAQDMSSSTLTSPLEASWVSSQNDSPSDVSEGPEYLAIGNPDPH
                     GRTASCQSPSSSGESSSSHLFSCSSPQKPDAATAAAAAAAASLGDQEAGRQSQAGSTL
                     RRSSFSEGQTVPAASGTKKSHIRSHSDTNIASRGAAGGPRNITIIVEDPIADSCNDKL
                     NLRDPFPPLARAVQSAPSPLCMENEGGQYLCSGEGMFRRPSEGQSLISYLSEQDFGSC
                     ADLEKENAHFSISESLIAAIELMKCNMMSQCLEEEEVEEEDSDREIQELKQKIRLRRQ
                     QIRTKHLLPAYQETEHGSFRVTSSSSQFSSRDSTQLSDSGSAEDVDEFEIQDPDIRRS
                     MVSNGKSSFSQNFSHCFLHSTSAEAVAMGLLKQFEGMQLPAASELEWLVPEHDAPQKL
                     LPIPDSLPISPDDGQHADIYKLRIRVRGNLEWAPPRPQIIFNVHPAPTRKIAVAKQNY
                     RCAGCGIRTDPDYIKRLRYCEYLGKYFCQCCHENAQMTVPSRILRKWDFSKYYVSNFS
                     KDLLIKIWNDPLFNVQDINSALYRKVKLLNQVRLLRVQLYHMKNMFKTCRLAEELLDS
                     FDVVPGHLTEDLHLYSLNDLTAAKKGELGPRLAELTRAGAAHVERCMLCQAKGFICEF
                     CQNEDDVIFPFELHKCRTCEECRACYHKTCFKSGSCPRCERLQARRELLAKQSLESYL
                     SDYEEEPTEALALEATVLETT"
ORIGIN      
        1 gggaattgta gttcttggag ccggaagtgg gggtggcagg ggtagaacgg cagctgaggc
       61 agcaatcctt gactctgtcg ctgtcagggt gtagtgcatg gttctgagcc caccagccag
      121 gtgcctcccc tctcttgagg gtgctccggg tgccctggct gtcgaagcgg cctggagcct
      181 ctcttcggcc ccgagacggc cttacagtcc ggatgcgtcc ggagggcgcg ggaatggatc
      241 ttggcggcgg cggggaacgc ctgccggagg agagcaggag agagcactgg cagctgctgg
      301 gtaatttgaa gactactgtg gagggtttgg tgtcggccaa ctgccccaat gtctggtcca
      361 agtatggggg tctggagcgg ctttgcaggg acatgcagaa cattctgtat catgggctca
      421 tccatgacca ggtctgttgc cgccaggctg attactggca gtttgtgaaa gacattcggt
      481 ggctcagccc gcactcagcc cttcacgttg aaaagttcat cagtttgcat gagagtggcc
      541 agagcgacac caacagcgtg agtgaacaca ctgtcgcaga gctgtggctg cagcacagcc
      601 tgcagtgcca ctgtctctca gcccagctcc ggcctctgct tggggacaga cagtacatga
      661 gaaaattcta cacagaaact gccttcctgc tgagtggcgc ccacgtcaca gccatgctcc
      721 agtgcctaga agcagtggaa cagaacaacc cgcggctcct ggctcagatt gacgcatcta
      781 tgtttgccag aaagcaggag agcccactgc tggtcacaaa gagccagagt ctcacagctc
      841 tgcctggttc tgcatacacc cctccaacca gctgtgctca gcattcctac tttgggtcct
      901 cctccagcct tcaccagtcc atgcctccca gccacagctc agaaagaaga tctacttcct
      961 tctcactctc tggccctccc tggcaacctc aagaagacag ggagtgcctc tcagcagcag
     1021 agactcaaac cacccaagct ccactgcttt cagactccgc tctagcccag gattccccac
     1081 tgaccgccca ggacatgagc tccagcactc tgactagccc cctcgaggca tcctgggtca
     1141 gcagccaaaa tgactccccc agtgatgtca gtgaggggcc tgagtacctg gccattggca
     1201 acccagaccc tcatggccgg actgccagtt gtcagagtcc cagcagcagt ggtgagagta
     1261 gcagctctca cttgttctcc tgcagcagcc ctcaaaagcc agatgctgct actgctgctg
     1321 ctgctgctgc tgctgcttct ctaggggacc aggaggcagg taggcagagt caggcaggca
     1381 gcacccttcg cagatccagc ttctcagaag gacagacagt ccctgccgcc agcgggacaa
     1441 agaagagtca tattcgctcc cactcagata ccaacattgc ctccagagga gccgcaggag
     1501 gccccaggaa tatcaccatt atagttgaag atcccattgc agactcctgc aacgataagt
     1561 tgaatttgag agaccccttc cctcctctgg ccagagcagt gcagtcagcg cccagccctc
     1621 tgtgcatgga gaatgagggt ggtcagtacc tctgctcagg agaaggcatg tttagaagac
     1681 cgtcagaagg acagtccctc atcagttacc tctctgagca agactttggc agctgtgcag
     1741 acctggagaa ggaaaatgcc cacttcagca tctccgagtc gttgattgcc gccatcgagc
     1801 tgatgaagtg caacatgatg agccagtgcc tagaagagga ggaagtagag gaggaagaca
     1861 gtgaccgaga gatccaggaa ctgaagcaga agatccgcct ccggcgccag cagatccgca
     1921 ccaaacacct gctccctgcg taccaggaga ctgagcatgg aagcttccgg gtcacctcca
     1981 gcagctccca gttcagttca cgtgattcta cacagctctc agactctggc tctgctgaag
     2041 acgttgatga atttgagatc caagatcctg acatccgaag gagcatggtc tcaaacggca
     2101 aatcatcctt ctcccagaat ttctcgcact gcttcctaca ctccacctct gctgaggccg
     2161 tggccatggg gcttctgaag caatttgagg ggatgcagct tccagctgcc tcggagctag
     2221 agtggctagt cccagagcat gatgcccccc agaagctcct gcctatcccg gactccctgc
     2281 ccatctcacc agatgatggg cagcatgcag acatctacaa gcttcggatc cgtgtccgtg
     2341 gcaacctgga gtgggctcca ccgaggcctc agatcatttt caacgttcat ccagccccaa
     2401 cgaggaagat tgctgtggcc aagcagaatt accgctgtgc aggatgtggc atccggaccg
     2461 accctgatta tatcaaacgg ctgcggtact gtgagtacct gggcaagtac ttctgccagt
     2521 gctgccatga gaatgcccag atgaccgtcc ccagccgcat tctgcgcaag tgggacttca
     2581 gcaagtacta tgtcagcaac ttttccaagg acctgctcat taagatctgg aatgatcctc
     2641 tcttcaatgt gcaggacatc aatagcgccc tctacaggaa ggtcaagctg ctcaaccaag
     2701 ttcggctgct gcgggttcag ctctaccaca tgaagaacat gtttaagaca tgccggctgg
     2761 ccgaagagct cctggattcc tttgatgtag ttccaggcca cctgacagag gacctccatc
     2821 tgtactccct gaatgacctg accgcagcca agaagggaga actggggccc cggctggcgg
     2881 agctcaccag agcgggagcc gcccacgtag agagatgcat gctgtgccag gccaagggct
     2941 tcatctgcga gttctgccag aacgaggatg acgtcatctt cccatttgag ctgcataagt
     3001 gccggacctg tgaagagtgt agagcgtgtt accataaaac ttgcttcaag tctggaagct
     3061 gcccccggtg tgagcggctg caggcccgac gggagttgct ggccaagcag agcctggagt
     3121 cctacctgtc tgactatgag gaggagccca cagaagcctt ggctctagag gccaccgtcc
     3181 tagagaccac ctgaggaatg tgcctaagcc ctttgtctaa gggtctggct agggtcagat
     3241 atagaactga gccacacctt caaggaaggt ggggcctttt aaaaatatat attgtcattt
     3301 ttttatgact tgtctgctgt ccaggtgtag gcaaccttta tgggttgatg gatccagtct
     3361 attgtgacag atatctgtgg acattgggta ttttcatcag aactgaccct tggagtgcct
     3421 cttgtcaggg gagtggacat caagacccag ttccgacacg cttggcctct tccactagga
     3481 tcagatctgg tttcagatgc agctcgaaga tcattcccat tcctgactta gttcctcagc
     3541 gtccgagcca ggcctttctc agccaatgat ctcctttgct gctgaaacag aagaatggtc
     3601 ttttctctgt cctagtccta aaagagaata agactgtgcc ctgaggcact gaagagaaag
     3661 gaggtacagc caggcagtct gtctgacgac ttaggtatat ggggggcagg taggaacaga
     3721 accatcattg tgctggaatc cccaggatct caagggggca aacatggctt ccctggttca
     3781 aatattcctg gcataggctg gtttgtgtac tctggtaggc ttgaagcaaa gaacagatct
     3841 gagtcttagg ccaggccaca agcagaagtg tggctgcagc tggtgcttaa ggagcggttt
     3901 tctcagaagt gccgacagcc tcctctgggg tggtcagttc atgctcaggc aagtccctga
     3961 tgcaacctaa ggcaaggata gaaacaccac ccaccatctt aatagtgggt tccttattgc
     4021 tctgtacaac tatgtgacca tcatggttct aagtacaggt atgacccagc tccattctct
     4081 gtcccccatc agagctgggc ccttcttggc tgatctcttg cctcagtttc ctttctcaga
     4141 gttggggagg ctgtcccccc actagtagtg ctagagcact tgacagtgtg tgaatgtttc
     4201 tgcttactct gagtaacagg agccttacgc agttaactct cttcagcctt ggtaatgtat
     4261 gttgaaccat ccttttcctg atttaacaga cccttcccct atcacctaat gtgcattttt
     4321 tcgtgggaag tttcctggac taggccgcac ataactgtgg tggtgtttga gttgctgcgc
     4381 acctaacgtc tattaacact ggtcagggtt gcctctcaga gcctggcata tctgtaactg
     4441 acatccacag cgcccttgtt ctggagctgg cctgtgtctc tgtacttgat tgctagcaaa
     4501 gtcattggtg caggcagtgc cccaagaagt caaacagagt tgcacatgct gtagctgagc
     4561 taaagggaac cagggctctc ccagagaggc agaggcacat tggtgtaaca gccaggctaa
     4621 gctctagcag agcaagagga acgagtggaa actgacccaa ggtgtggctc ccctgcctca
     4681 cacttgggat ctgacaactc tatgggctgg atgactagaa cagctctctg caggagataa
     4741 ggcagaaagc tgaggccaaa gccagtttca aagaagagct ggttagaaat cctttccaac
     4801 tctgttatca ctgagtcaga ccttggattg ggactctgac tccagttcca gttcctggct
     4861 gacttcccgt ccagatgctc actgatgtca ccacaatgga ggagacttac acccatctcc
     4921 cagtcagcac aggctcaagc agtctccccg cctttcctgt ttccccacct cccctaccca
     4981 gtccctctag atcatatacc ctttagaacc cctgagtctg tgctgtcatt actgaccata
     5041 taccctcgtt tgtttgggag ttggggagaa ggagcaggga ggtgaggtga aagccctttg
     5101 tcacttaatg atatctgagg atcccctgct acagtaggga gaagcgtccc aggactgatg
     5161 ggacggacgc tgcaagaggg gaacacccgc tgtcccgagg agaaaactcc aagtcctctt
     5221 cctctgctga ggggtggaga gctttcgctg aactaacaga aagggagcaa gagtctaaat
     5281 aaaaatgctc tgtttgtgta caacttgtgt ttagaactgg attttcacct gctgtaattt
     5341 acacacatcc tgacagttca tagtcatctt taataaacta agaaaaataa atcttgcctt
     5401 ttacttacct acc
//
