LOCUS       XM_039096622            4591 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus rotatin (Rttn), transcript variant X9,
            mRNA.
ACCESSION   XM_039096622
VERSION     XM_039096622.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039096622.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4591
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4591
                     /gene="Rttn"
                     /note="rotatin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 5 ESTs, 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:291377"
                     /db_xref="RGD:1306706"
     CDS             148..4236
                     /gene="Rttn"
                     /codon_start=1
                     /product="rotatin isoform X7"
                     /protein_id="XP_038952550.1"
                     /db_xref="GeneID:291377"
                     /db_xref="RGD:1306706"
                     /translation="MHTVVKKLCLIEKIIGYLNEFVGQDGKVIECLIRPCLTLLRKVV
                     CADLVIRASLSQQASLLTLLLRVSLIFHEDCAVVAEVGALFCLLLFDEVSRMDMWSDN
                     SSNKPSLSSVFSLPVSVFRRYHLPVYVNGHHAVSPYSIVLPLSTECLALKPVSDMLRI
                     AWNLAWYHGSDNLLKQTTSETKIQEFSDTLQLSTEDILTLKITYTDSGLKDCLQSIVQ
                     AGGHRDVRAAITRMSFYLLNDKLSLKDDIGPCGFTLKSLAWHTVLNRFLQVLPACTED
                     EKLLIDIIHFLNKLIKEQRKNPSVELLNWILELLLRHNPNPLLDLLVLTESHTREVTD
                     EIRTAVRQQLQKELITLLNSLLLVCMTVSDRKCLELFYVFQTQLSLKLLQCLRVTDAP
                     HFYGLPSLERTLAGMAHLTASPGWSAHSPLSKPLEICGKYLSGLLEVITSFYVERGGN
                     AMSFMGKGVTKSTVLCLLHLSHEMIVQAPNSEWMPLWFLPLGSHSEENVPSQQGLAWL
                     IPLWVDRDPEVRFTSLGLGSALTTMEAGCVALANSCQNISGGLWGTVVNILLDQSECS
                     MVRREAAFILQNLLVIPMPSKVIKDYTWQGPCVHDEDSGLSLSGKPALQALLYHCRFY
                     EHLTHMVKHCYVGRYMFDFNISAFTETSEYNDLNGLDDSFKFWRAPSGTSTQDHEPSS
                     LSTSETMVAASVVSAEIQPLLPSTLLPEPAALDQFVTQGQPEVRPVRPRDSSPSASLH
                     RQCVFVTPSLLSAVCSLLDNLLAVTPRDAANAFQQAHLIELLCSTMDASLLEMCVQEL
                     KTPLSLSSAVEHTQAQTSFFLEYLSSLFQLLKSCLLVDPKLVTQDELLKPLITNVIRV
                     LIVCTKDVLDVQLVLAFHRTWTHLFDLLATLLRKAGAVSLVPLTSALAKHWEAVTDTL
                     CRCVGLSVKCPALSIASLQFLSVLLAEEEKRRVQDKDKTNACQTPTVAFLLDGTQGSL
                     RSSERLNETILQCYEGISSKDVLKRVAANALMSLLAVSRRAQRHALKSDLIENCVEQM
                     KHINAQLNLDVLRPGKAALKKKEDGIIKELSITLQLLRNCLYQNEECKVAAFEAHLVP
                     VLHSLWPWLLMEDSLMQIALQLLCVYTANFPTGCSSLCWSNYGQYIQTAHRGTPSSSL
                     ILCALKLASQVPAENTPIQQAVFMFLSNLALSHDCKGVIQKSNFLQHFLSLTLPKGGN
                     QHLSNVTILWLKLLLNMSFGEDGQQMILRLDGCLDLLIEMSKYTHKSSPHVPLLIFHN
                     ICCSPANKPKILANEKVVTLLATCLESENQNAQRIGAASLWALTYNYQKAKATLKNPS
                     IKRKIDEAYSIAKRTFSNSEEDPLNSYYLKCLENLVQLLNCS"
ORIGIN      
        1 gcagaaaata ggctctaaag atgtggaagc ttggcatgac acgcataatc acaagtctca
       61 gaaggccgag gcagaatgat tctgtgacca acctgggtat aaagagaccg tacttcaaaa
      121 tctggaaaga aggagctaga tattaaaatg catactgtgg tgaaaaagtt gtgcttaatt
      181 gagaagatta ttggatacct aaatgaattc gtgggtcaag atggcaaggt tatagaatgc
      241 ttgattcggc catgtctcac actcctgagg aaggttgtgt gtgctgacct ggttatccgt
      301 gcctctttgt cacagcaggc ctctctcttg accctcttac tcagagtttc cttgatattt
      361 catgaagact gtgctgtggt ggctgaagtc ggggcattgt tttgtcttct gttgttcgat
      421 gaagtatcaa gaatggatat gtggtctgat aattcttcta ataaaccttc tttgtcatca
      481 gtcttcagtt tgcctgtttc agtctttaga aggtatcacc taccagttta tgtgaatggc
      541 caccacgctg tgagtcctta ctcaatagtt ttgccattat ctactgaatg tttggccctc
      601 aagcctgtgt cagatatgct gagaatagct tggaacctgg catggtatca tgggagtgat
      661 aatctattga aacaaacgac ctctgaaact aaaattcagg aattttcaga tacactgcag
      721 ctgtccacag aagatatcct tacactgaag atcacataca cggatagtgg gctgaaggac
      781 tgccttcagt ccattgttca ggctggaggc cacagggatg tgagggctgc tattaccagg
      841 atgagttttt atcttttgaa cgacaaactg tctttgaagg atgatattgg tccatgtggg
      901 tttactttaa agtccttggc ctggcacact gtgctgaaca ggtttttaca agtacttcct
      961 gcttgcactg aagatgaaaa actgctaata gatatcatac attttttgaa taagttaata
     1021 aaggaacaaa gaaaaaatcc atcagtagaa cttttaaact ggattctaga attacttctt
     1081 agacataatc caaacccact attagacctg ctggttctga cagagtcaca tacacgagaa
     1141 gtaacagatg aaatccggac tgctgtcaga cagcaactcc agaaagaatt gatcactctt
     1201 cttaattcct tattgctggt ttgcatgaca gtttctgaca ggaaatgcct ggaactattt
     1261 tatgttttcc aaacacagct gtctctgaag ctactccagt gcctcagagt cacagatgct
     1321 ccccatttct atggcttgcc ttccttggag aggaccttag cagggatggc tcacctcact
     1381 gcctcccctg ggtggagtgc acattctcct ctctcaaagc cacttgagat ttgtgggaag
     1441 tacttgtcag gtctcctgga ggtaattact tctttttatg tggaaagggg aggaaacgct
     1501 atgtccttca tggggaaagg tgtgacgaag agcacagttc tttgcttact tcatttatcc
     1561 cacgagatga tagtccaggc accaaactcg gagtggatgc cactttggtt cttgcctttg
     1621 ggtagtcaca gtgaagaaaa cgtcccttct cagcaaggat tggcctggct gattccctta
     1681 tgggttgatc gagacccaga ggtgagattc acttcactgg ggttgggatc agcactgact
     1741 actatggaag ctggctgtgt ggccctggca aacagttgtc agaatatttc tggtgggctc
     1801 tggggaactg tggtgaacat tcttctggat cagtcagaat gcagtatggt gcggcgggag
     1861 gctgcattta tacttcagaa tctccttgta attccaatgc cttcaaaggt tataaaggat
     1921 tatacttggc agggcccctg tgtccatgat gaagattctg gcctgtcact ttcaggaaaa
     1981 cctgcactac aggccctttt gtatcactgc cgtttctatg aacatttgac tcacatggtg
     2041 aaacattgtt acgttggaag atatatgttt gattttaata tttctgcttt tactgaaact
     2101 tcagaatata atgatttaaa tggtttagat gactcattca agttctggag ggccccctct
     2161 gggacatcta ctcaggatca tgagccaagt tctctttcta cctcagaaac aatggtggcg
     2221 gcttcggtgg tcagtgctga gattcagccc ctgctgccat caacacttct tcctgaacca
     2281 gcagcccttg accagtttgt gacacaaggt caacctgaag tcagacctgt gcgaccgcgt
     2341 gactcatcgc cgtctgcttc cctgcacagg cagtgtgtgt ttgttactcc gtctctgctg
     2401 tcagcagtgt gtagcctctt agacaacctc ttggcagtta ctccaagaga tgctgcaaat
     2461 gcttttcaac aagctcatct catagaactc ctctgtagca ctatggatgc ctccctccta
     2521 gaaatgtgcg tccaggaact caagacccca ctgtctttat catctgctgt tgaacatact
     2581 caggctcaga cttccttttt tttggagtac ctatcctctt tgttccagct tttgaagtcc
     2641 tgtctgttgg tagatcctaa acttgtgaca caagatgagc tcttgaaacc tcttatcact
     2701 aatgtcatcc gagttctcat tgtgtgtacc aaagatgtat tggatgtaca gttagtgttg
     2761 gcttttcacc gcacatggac acatttattt gaccttctgg ccacactact gaggaaggct
     2821 ggtgctgtct cccttgttcc tcttacctca gctcttgcca agcactggga ggcagtgact
     2881 gatacactgt gcagatgtgt gggcctctca gtcaagtgtc ctgcccttag tattgccagc
     2941 ctccagttcc tgtctgttct cttggctgag gaagaaaaga gacgtgtcca ggacaaggat
     3001 aaaacaaatg catgtcagac cccaacagtg gccttccttc ttgatggaac tcagggaagc
     3061 cttagatctt cagagcgact taatgaaaca attcttcagt gctatgaagg aatctcctcc
     3121 aaagacgtcc tgaaaagagt tgctgcaaat gctctgatgt cacttctggc tgtcagcaga
     3181 agagcgcaga ggcatgcgtt gaaatctgat ctcatagaaa actgtgtgga gcagatgaag
     3241 cacatcaatg cacaactgaa cctagatgtg ctgaggcctg ggaaagcagc actaaaaaaa
     3301 aaggaggatg gcatcattaa agagttaagc attaccctgc agctcctaag aaactgcctt
     3361 tatcaaaatg aagaatgtaa agtggcagct tttgaagcac atcttgtgcc tgtcctgcac
     3421 tctctctggc cttggctttt gatggaagat tcattgatgc aaattgcctt gcagttgctt
     3481 tgtgtctata ctgcaaattt tccaactggc tgtagttccc tttgttggtc aaattatgga
     3541 cagtatattc aaaccgcaca cagaggcacc cccagcagct ccctgatact gtgtgccctg
     3601 aaactggctt ctcaggtgcc tgcagagaac acccccattc agcaggcggt ttttatgttt
     3661 ctttcaaacc tggctttatc tcatgactgc aagggagtaa ttcagaagag caactttcta
     3721 cagcacttcc tgtccctaac attgcctaaa ggaggaaatc aacatctcag caatgtgacc
     3781 attctatggt tgaagttgct cctgaatatg tcgtttggag aagatggaca gcaaatgatc
     3841 ctgagactgg acggctgctt agacttactc atcgagatga gcaagtacac acacaagagc
     3901 agccctcacg tgcctctgct gatctttcat aacatttgct gcagtcctgc taataagcct
     3961 aaaattctgg ctaatgaaaa ggttgttact cttctggcta cctgcttaga aagtgagaat
     4021 caaaatgccc agaggattgg agcggcttca ctttgggctc taacatacaa ttaccagaag
     4081 gcaaaagcaa ctttgaaaaa tccatcaatt aaaagaaaaa tagatgaagc atattccata
     4141 gcaaagagaa ctttctcaaa ctcagaagaa gaccctctaa attcctacta tttgaaatgc
     4201 cttgagaatc ttgtacaact gcttaactgt tcctgaccca tgagataccc tactccaaac
     4261 ctgaccgcca tccacaggag atctggatca ggggccactt tgtatagcag ctgcagcttt
     4321 gtatagcagc tgcccctgaa tgatgctaac tctgcagtat gagtgcctgc ctccctgtga
     4381 ggcagcagcc gccacactga aaggagtagc tctggtgact tctcaggctg ttcgttcctg
     4441 gcagtcttcc agaagtgaag acttgctggc ctaagatgct gcaaagacag aattctggca
     4501 atataaacat tttttacact tttctatgca atatgttttg taaaatgtct atttaatagt
     4561 tatttaataa ataatatttt tagaaactat a
//
