LOCUS       XM_039096621            5642 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus rotatin (Rttn), transcript variant X7,
            mRNA.
ACCESSION   XM_039096621
VERSION     XM_039096621.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5642
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5642
                     /gene="Rttn"
                     /note="rotatin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 4 ESTs, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 14 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:291377"
                     /db_xref="RGD:1306706"
     CDS             291..5501
                     /gene="Rttn"
                     /codon_start=1
                     /product="rotatin isoform X6"
                     /protein_id="XP_038952549.1"
                     /db_xref="GeneID:291377"
                     /db_xref="RGD:1306706"
                     /translation="MVLAGLIRKLGHQLTEIRERALKSILCKIEHNLICCADLIQERL
                     LFLHLLEWFNFPSVPMKEEVLNLLSRLVKYPPAVQHLIDLGAVEFLSKLRPNVEPAIQ
                     AEIDGILDGLFILPSEVPALRSATYQPDQNELSQQPEVLTGYFPQDKSNLQQMEVPPG
                     PVGNPTVKWLRFSVFPWLPLTTTDRHVLSSNESSLRSSNHTLIWNTCELLKDVIMQDF
                     PAEIFLQRPKIVQGLLCLVKLAFGGDGKHRLALQSVSCLQQLCTSLRNRLNFYRDPNL
                     FSNKQDTISQNSSLSYCHEARGPYHSPNPSPGSSSSRPSVVGRTGQRPRGDGQDWDAV
                     SSSGSSSHAHVNSRLSVRSPLDVAHADLPELETEDALELHFQQLSLPQFCISTLDAAV
                     PLLRTGSREMVIRVLELLGEDLLLIGQAISSEIWDDNSLFAIDVKEKLLQVLGSLGET
                     MCYRKTSFSLEQAEAILVHHRMAFVSISLFTVRLLQILLPVEKASEFLPESMSAALFF
                     VSLDMPISLEYPEIHDTVVAYLEQLDSENYSIYKRTAEAVYSIECTCNFLSDVGKEGE
                     KNLLELVELADQALRSFSYHQHSPLIKEVICLCSKIWKSAQASPLLQGESQKVFLHML
                     SHPLPQVKVETYQCCLEIVKECLGVHNVTKPVSSLCSGIHFLLHPKVLYEISAFGIQE
                     SKNEVNAAAKAVLLYLLQGRFMMTALTWNKFIESLCPVIPVLQGYADTEDPLGNCILL
                     LSKVSSETGEGILPCTTRLKSVLRLLLVKKPSVRSLALKLLAFHLTGEEGADTKRPFV
                     DARVLSRVTNLFIVKKPIDLKLDDRRELVIKLETVKKVYEIFTSDDVDLVLRKSAAEQ
                     LAVIMQDIKMHTVVKKLCLIEKIIGYLNEFVGQDGKVIECLIRPCLTLLRKVVCADLV
                     IRASLSQQASLLTLLLRVSLIFHEDCAVVAEVGALFCLLLFDEVSRMDMWSDNSSNKP
                     SLSSVFSLPVSVFRRYHLPVYVNGHHAVSPYSIVLPLSTECLALKPVSDMLRIAWNLA
                     WYHGSDNLLKQTTSETKIQEFSDTLQLSTEDILTLKITYTDSGLKDCLQSIVQAGGHR
                     DVRAAITRMSFYLLNDKLSLKDDIGPCGFTLKSLAWHTVLNRFLQVLPACTEDEKLLI
                     DIIHFLNKLIKEQRKNPSVELLNWILELLLRHNPNPLLDLLVLTESHTREVTDEIRTA
                     VRQQLQKELITLLNSLLLVCMTVSDRKCLELFYVFQTQLSLKLLQCLRVTDAPHFYGL
                     PSLERTLAGMAHLTASPGWSAHSPLSKPLEICGKYLSGLLEVITSFYVERGGNAMSFM
                     GKGVTKSTVLCLLHLSHEMIVQAPNSEWMPLWFLPLGSHSEENVPSQQGLAWLIPLWV
                     DRDPEVRFTSLGLGSALTTMEAGCVALANSCQNISGGLWGTVVNILLDQSECSMVRRE
                     AAFILQNLLVIPMPSKVIKDYTWQGPCVHDEDSGLSLSGKPALQALLYHCRFYEHLTH
                     MVKHCYVGRYMFDFNISAFTETSEYNDLNGLDDSFKFWRAPSGTSTQDHEPSSLSTSE
                     TMVAASVVSAEIQPLLPSTLLPEPAALDQFVTQGQPEVRPVRPRDSSPSASLHRQCVF
                     VTPSLLSAVCSLLDNLLAVTPRDAANAFQQAHLIELLCSTMDASLLEMCVQELKTPLS
                     LSSAVEHTQAQTSFFLEYLSSLFQLLKSCLLVDPKLVTQDELLKPLITNVIRVLIVCT
                     KDVLGCLIQS"
ORIGIN      
        1 ttggacggaa gagggtgcta cctcttcttg actcccttat accttaggct tcttaggacc
       61 gaggcagagg tatacgtaat cagtcgtaat aacaaagaga tatcgtaaac ttgtgtggtg
      121 acagaagcat tgggaacttt tcatttactg ctctctactc aaggggtggc tagcgtagac
      181 atcgtggaac ctctgttcct ttcagacgag tttccggagg atattaatta tgaacgaact
      241 ctgtggcgcg accgtttaat tctccggcgg cgacagattg tggtggagag atggttctgg
      301 cggggctcat caggaagctc ggccatcagc tgacagagat cagggaacgc gccctcaaaa
      361 gtatcctgtg caagatcgag cacaacttga tctgctgtgc tgacttgatt caggaaaggt
      421 tgctttttct ccatttgctt gaatggttca atttcccgtc cgtcccaatg aaagaggagg
      481 ttctgaactt gttaagcaga ttggttaagt atcctccagc tgtccaacac ttgattgacc
      541 ttggtgcagt agagttctta tctaagctcc gtccaaatgt ggagccagca attcaggctg
      601 agattgatgg cattctcgat ggacttttca ttcttccttc agaagttcct gcactgcgtt
      661 ctgccactta ccaacctgat caaaatgaat tgtcacaaca acctgaagtt ttaacaggct
      721 attttcccca agacaaaagt aatctccagc agatggaagt cccaccaggg ccagtgggaa
      781 acccaactgt gaagtggctg aggttctctg tgtttccttg gctacccctg accacaacag
      841 acagacatgt tctctcctcc aatgaaagct ccttgagaag tagtaaccac actctgatct
      901 ggaacacctg tgagcttctg aaggacgtga tcatgcaaga ctttcctgcg gagatttttc
      961 ttcagaggcc taagattgtt cagggccttt tgtgtctggt gaagctggcc tttggaggag
     1021 atgggaagca tcgtctcgcc ttacagtcag tgtcctgttt gcagcagctg tgcacaagct
     1081 taagaaacag actcaacttt tacagagatc ccaacctttt ctcgaataaa caagacacaa
     1141 tctcccagaa ttcttctttg tcttactgtc atgaagcaag aggtccttac cattccccaa
     1201 acccgtcccc aggaagcagt agctctcggc cttccgtggt tgggcgtaca ggccagcgac
     1261 cccgaggaga tggccaggac tgggatgcag tgtcttccag cgggagcagc agtcacgcac
     1321 atgtgaactc taggctgtct gtgcgttctc ccttggatgt ggcgcatgca gatctgccgg
     1381 agctggaaac agaggacgca ttggagctgc acttccagca gcttagtctt cctcagttct
     1441 gcatctccac cctggacgca gcagtccctc tgctgaggac aggtagcaga gaaatggtaa
     1501 taagagtttt ggaactgctt ggagaggacc tgttgctcat tggacaagca atttcatctg
     1561 aaatctggga tgataacagc ctttttgcta tagatgtgaa agagaaactg ctccaagtgt
     1621 tggggtccct tggagaaact atgtgctacc gaaagaccag ttttagcttg gagcaagcag
     1681 aggctatact agtgcaccac aggatggcct ttgtcagcat ctcactgttc accgttcgac
     1741 tgttacaaat tcttctccct gttgaaaagg ctagtgagtt tttgccagag tccatgtcag
     1801 cagcattatt ttttgtctcg ttggacatgc ctatttcttt ggaatatcca gagattcatg
     1861 acactgttgt ggcttatttg gaacagctgg attctgaaaa ttacagcatt tataagcgaa
     1921 ctgcagaggc tgtttattca attgaatgta cctgtaactt cctatctgat gtggggaaag
     1981 agggagaaaa gaatctccta gaattagtgg agctggcaga ccaagccttg cgtagctttt
     2041 cctatcatca gcattccccc ctcataaagg aagtcatctg cctttgttca aagatctgga
     2101 aatctgcaca ggctagtcca ctactccagg gagagagcca gaaggtgttt ctccatatgc
     2161 tgtctcaccc attgccacag gtgaaggtgg agacttacca gtgctgcctg gagattgtga
     2221 aggagtgttt aggtgtccat aatgtcacta aacctgtgtc ttcactgtgt agtggaattc
     2281 attttctgct tcatccaaaa gttctctatg aaatctctgc atttggtatt caagaatcca
     2341 aaaatgaggt gaatgctgct gccaaggctg ttctcctgta tctgcttcaa ggacgattta
     2401 tgatgacagc tctgacctgg aacaagttta tcgagtctct ctgtcctgtc attccagtgc
     2461 tacagggcta tgctgataca gaagaccctt taggcaactg cattctcctt ctaagcaaag
     2521 tgagttctga gacaggagaa ggcattctcc cctgcactac ccggctgaag tctgtgctac
     2581 gacttttgct agtgaaaaaa ccttcggttc gctcactagc attaaaactt ttagcatttc
     2641 atcttaccgg tgaagaagga gctgatacaa agcgcccatt cgtagatgct agagttcttt
     2701 ccagagttac taatctgttt attgtgaaaa aacctattga tcttaagttg gatgacagaa
     2761 gagaactagt tattaagttg gagactgtta aaaaggtgta tgaaatcttc acctcagatg
     2821 atgttgatct tgttttaaga aagtcagcag cagaacaact agctgtgata atgcaagata
     2881 ttaaaatgca tactgtggtg aaaaagttgt gcttaattga gaagattatt ggatacctaa
     2941 atgaattcgt gggtcaagat ggcaaggtta tagaatgctt gattcggcca tgtctcacac
     3001 tcctgaggaa ggttgtgtgt gctgacctgg ttatccgtgc ctctttgtca cagcaggcct
     3061 ctctcttgac cctcttactc agagtttcct tgatatttca tgaagactgt gctgtggtgg
     3121 ctgaagtcgg ggcattgttt tgtcttctgt tgttcgatga agtatcaaga atggatatgt
     3181 ggtctgataa ttcttctaat aaaccttctt tgtcatcagt cttcagtttg cctgtttcag
     3241 tctttagaag gtatcaccta ccagtttatg tgaatggcca ccacgctgtg agtccttact
     3301 caatagtttt gccattatct actgaatgtt tggccctcaa gcctgtgtca gatatgctga
     3361 gaatagcttg gaacctggca tggtatcatg ggagtgataa tctattgaaa caaacgacct
     3421 ctgaaactaa aattcaggaa ttttcagata cactgcagct gtccacagaa gatatcctta
     3481 cactgaagat cacatacacg gatagtgggc tgaaggactg ccttcagtcc attgttcagg
     3541 ctggaggcca cagggatgtg agggctgcta ttaccaggat gagtttttat cttttgaacg
     3601 acaaactgtc tttgaaggat gatattggtc catgtgggtt tactttaaag tccttggcct
     3661 ggcacactgt gctgaacagg tttttacaag tacttcctgc ttgcactgaa gatgaaaaac
     3721 tgctaataga tatcatacat tttttgaata agttaataaa ggaacaaaga aaaaatccat
     3781 cagtagaact tttaaactgg attctagaat tacttcttag acataatcca aacccactat
     3841 tagacctgct ggttctgaca gagtcacata cacgagaagt aacagatgaa atccggactg
     3901 ctgtcagaca gcaactccag aaagaattga tcactcttct taattcctta ttgctggttt
     3961 gcatgacagt ttctgacagg aaatgcctgg aactatttta tgttttccaa acacagctgt
     4021 ctctgaagct actccagtgc ctcagagtca cagatgctcc ccatttctat ggcttgcctt
     4081 ccttggagag gaccttagca gggatggctc acctcactgc ctcccctggg tggagtgcac
     4141 attctcctct ctcaaagcca cttgagattt gtgggaagta cttgtcaggt ctcctggagg
     4201 taattacttc tttttatgtg gaaaggggag gaaacgctat gtccttcatg gggaaaggtg
     4261 tgacgaagag cacagttctt tgcttacttc atttatccca cgagatgata gtccaggcac
     4321 caaactcgga gtggatgcca ctttggttct tgcctttggg tagtcacagt gaagaaaacg
     4381 tcccttctca gcaaggattg gcctggctga ttcccttatg ggttgatcga gacccagagg
     4441 tgagattcac ttcactgggg ttgggatcag cactgactac tatggaagct ggctgtgtgg
     4501 ccctggcaaa cagttgtcag aatatttctg gtgggctctg gggaactgtg gtgaacattc
     4561 ttctggatca gtcagaatgc agtatggtgc ggcgggaggc tgcatttata cttcagaatc
     4621 tccttgtaat tccaatgcct tcaaaggtta taaaggatta tacttggcag ggcccctgtg
     4681 tccatgatga agattctggc ctgtcacttt caggaaaacc tgcactacag gcccttttgt
     4741 atcactgccg tttctatgaa catttgactc acatggtgaa acattgttac gttggaagat
     4801 atatgtttga ttttaatatt tctgctttta ctgaaacttc agaatataat gatttaaatg
     4861 gtttagatga ctcattcaag ttctggaggg ccccctctgg gacatctact caggatcatg
     4921 agccaagttc tctttctacc tcagaaacaa tggtggcggc ttcggtggtc agtgctgaga
     4981 ttcagcccct gctgccatca acacttcttc ctgaaccagc agcccttgac cagtttgtga
     5041 cacaaggtca acctgaagtc agacctgtgc gaccgcgtga ctcatcgccg tctgcttccc
     5101 tgcacaggca gtgtgtgttt gttactccgt ctctgctgtc agcagtgtgt agcctcttag
     5161 acaacctctt ggcagttact ccaagagatg ctgcaaatgc ttttcaacaa gctcatctca
     5221 tagaactcct ctgtagcact atggatgcct ccctcctaga aatgtgcgtc caggaactca
     5281 agaccccact gtctttatca tctgctgttg aacatactca ggctcagact tccttttttt
     5341 tggagtacct atcctctttg ttccagcttt tgaagtcctg tctgttggta gatcctaaac
     5401 ttgtgacaca agatgagctc ttgaaacctc ttatcactaa tgtcatccga gttctcattg
     5461 tgtgtaccaa agatgtattg ggttgcctca tccagtcttg atatgaggat gtacagttag
     5521 tgttggcttt tcaccgcaca tggacacatt tatttgacct tctggccaca ctactgagga
     5581 aggctggtgc tgtctccctt gttcctctta cctcagctct tgccaagcac tgggaggcag
     5641 tg
//
