LOCUS       NM_001395114            1009 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus RNA transcription, translation and transport
            factor (Rtraf), mRNA.
ACCESSION   NM_001395114 XM_039093223
VERSION     NM_001395114.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1009)
  AUTHORS   Popow,J., Jurkin,J., Schleiffer,A. and Martinez,J.
  TITLE     Analysis of orthologous groups reveals archease and DDX1 as tRNA
            splicing factors
  JOURNAL   Nature 511 (7507), 104-107 (2014)
   PUBMED   24870230
REFERENCE   2  (bases 1 to 1009)
  AUTHORS   Perez-Gonzalez,A., Pazo,A., Navajas,R., Ciordia,S.,
            Rodriguez-Frandsen,A. and Nieto,A.
  TITLE     hCLE/C14orf166 associates with DDX1-HSPC117-FAM98B in a novel
            transcription-dependent shuttling RNA-transporting complex
  JOURNAL   PLoS One 9 (3), e90957 (2014)
   PUBMED   24608264
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1009)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 1009)
  AUTHORS   Popow,J., Englert,M., Weitzer,S., Schleiffer,A., Mierzwa,B.,
            Mechtler,K., Trowitzsch,S., Will,C.L., Luhrmann,R., Soll,D. and
            Martinez,J.
  TITLE     HSPC117 is the essential subunit of a human tRNA splicing ligase
            complex
  JOURNAL   Science 331 (6018), 760-764 (2011)
   PUBMED   21311021
REFERENCE   5  (bases 1 to 1009)
  AUTHORS   Perez-Gonzalez,A., Rodriguez,A., Huarte,M., Salanueva,I.J. and
            Nieto,A.
  TITLE     hCLE/CGI-99, a human protein that interacts with the influenza
            virus polymerase, is a mRNA transcription modulator
  JOURNAL   J Mol Biol 362 (5), 887-900 (2006)
   PUBMED   16950395
REFERENCE   6  (bases 1 to 1009)
  AUTHORS   Mikula,M., Dzwonek,A., Karczmarski,J., Rubel,T., Dadlez,M.,
            Wyrwicz,L.S., Bomsztyk,K. and Ostrowski,J.
  TITLE     Landscape of the hnRNP K protein-protein interactome
  JOURNAL   Proteomics 6 (8), 2395-2406 (2006)
   PUBMED   16518874
REFERENCE   7  (bases 1 to 1009)
  AUTHORS   Howng,S.L., Hsu,H.C., Cheng,T.S., Lee,Y.L., Chang,L.K., Lu,P.J. and
            Hong,Y.R.
  TITLE     A novel ninein-interaction protein, CGI-99, blocks ninein
            phosphorylation by GSK3beta and is highly expressed in brain tumors
  JOURNAL   FEBS Lett 566 (1-3), 162-168 (2004)
   PUBMED   15147888
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            On Jun 3, 2021 this sequence version replaced XM_039093223.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ229372.1, FQ229497.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-166               JAXUCZ010000015.1  4496394-4496559
            167-291             JAXUCZ010000015.1  4497424-4497548
            292-391             JAXUCZ010000015.1  4499381-4499480
            392-478             JAXUCZ010000015.1  4502024-4502110
            479-567             JAXUCZ010000015.1  4502918-4503006
            568-636             JAXUCZ010000015.1  4504666-4504734
            637-685             JAXUCZ010000015.1  4506626-4506674
            686-1009            JAXUCZ010000015.1  4506792-4507115
FEATURES             Location/Qualifiers
     source          1..1009
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p16"
     gene            1..1009
                     /gene="Rtraf"
                     /gene_synonym="LRRGT00192; RGD1304704"
                     /note="RNA transcription, translation and transport
                     factor"
                     /db_xref="GeneID:302247"
                     /db_xref="RGD:1304704"
     exon            1..166
                     /gene="Rtraf"
                     /gene_synonym="LRRGT00192; RGD1304704"
                     /inference="alignment:Splign:2.1.0"
     CDS             106..840
                     /gene="Rtraf"
                     /gene_synonym="LRRGT00192; RGD1304704"
                     /note="UPF0568 protein C14orf166 homolog"
                     /codon_start=1
                     /product="RNA transcription, translation and transport
                     factor protein"
                     /protein_id="NP_001382043.1"
                     /db_xref="GeneID:302247"
                     /db_xref="RGD:1304704"
                     /translation="MFRRKLTALDYHNPTGFNCKDETEFRNFIVWLEDQKIRHYKIED
                     RGNLRNIHSSDWPKFFEKYLRDVNCPFKIQDRQEAIDWLLGLAVRLEYGDNAEKYKDS
                     VPDNRKNADNAAKNSEPLINLDVNNPDFKAGVMALANLLQIQRHDDYLVMLKAIRILV
                     QERLTQDAVAKANQMKEGLPVALDKHILGFDTGDAVLNEAAQILRLLHIEELRELQTK
                     INEAIVAVQAIIADPKTDHRLGKVGR"
     exon            167..291
                     /gene="Rtraf"
                     /gene_synonym="LRRGT00192; RGD1304704"
                     /inference="alignment:Splign:2.1.0"
     exon            292..391
                     /gene="Rtraf"
                     /gene_synonym="LRRGT00192; RGD1304704"
                     /inference="alignment:Splign:2.1.0"
     exon            392..478
                     /gene="Rtraf"
                     /gene_synonym="LRRGT00192; RGD1304704"
                     /inference="alignment:Splign:2.1.0"
     exon            479..567
                     /gene="Rtraf"
                     /gene_synonym="LRRGT00192; RGD1304704"
                     /inference="alignment:Splign:2.1.0"
     exon            568..636
                     /gene="Rtraf"
                     /gene_synonym="LRRGT00192; RGD1304704"
                     /inference="alignment:Splign:2.1.0"
     exon            637..685
                     /gene="Rtraf"
                     /gene_synonym="LRRGT00192; RGD1304704"
                     /inference="alignment:Splign:2.1.0"
     exon            686..1009
                     /gene="Rtraf"
                     /gene_synonym="LRRGT00192; RGD1304704"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atcgccccgc cccctcgccg cgtcgccggt gcctgcgccg cccgcctcac ctcgcttctc
       61 ctgtcccggc ggaggcccgg gcggccagcg cgagcagcgg ggaccatgtt ccgacgcaag
      121 ctcacggccc tggattacca caaccccaca ggcttcaact gcaaagatga aacagagttt
      181 agaaacttta tcgtttggct tgaagaccag aagatcagac actacaagat tgaagacaga
      241 ggtaacttga gaaacatcca cagcagtgac tggcccaagt tctttgaaaa gtatctcaga
      301 gatgttaact gtcctttcaa gatccaggac cggcaagaag ccattgactg gctccttggc
      361 ttagctgtta ggcttgaata tggagacaac gctgaaaagt acaaggactc agtgcctgac
      421 aacaggaaaa acgctgacaa cgcagctaaa aactcggagc cattgatcaa cctggacgta
      481 aacaatcctg attttaaggc gggtgtcatg gctctggcta acctccttca gattcagcgt
      541 cacgatgact acttggtaat gctgaaggca attcgaattt tggttcagga acggctaaca
      601 caggatgcag ttgctaaagc aaatcaaatg aaagagggct tacctgttgc tttagacaaa
      661 catattcttg gctttgacac aggcgatgca gttcttaatg aagctgctca gatcctgcgg
      721 ttgctacaca tagaagagct cagagagcta cagacgaaaa ttaatgaagc catagtagcc
      781 gttcaggcca tcattgctga tccaaagaca gaccacagac tggggaaagt tgggagatga
      841 gcacatgagg gtttcagctt ctcaccttag tgatgggaac tgtcacacca gcatgtgctt
      901 ggaaatcaaa tgtcacactt tgaagggagg agtcccagga gattgaccat gtcctagaga
      961 tttaccacca ctgctttttt tctttaataa agttggggaa gtaaaaggc
//
