LOCUS       NM_001107644            2074 bp    mRNA    linear   ROD 20-SEP-2024
DEFINITION  Rattus norvegicus reticulon 4 interacting protein 1 (Rtn4ip1),
            mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_001107644 XM_001062754 XM_228392
VERSION     NM_001107644.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2074)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 2074)
  AUTHORS   Angebault,C., Guichet,P.O., Talmat-Amar,Y., Charif,M., Gerber,S.,
            Fares-Taie,L., Gueguen,N., Halloy,F., Moore,D., Amati-Bonneau,P.,
            Manes,G., Hebrard,M., Bocquet,B., Quiles,M., Piro-Megy,C.,
            Teigell,M., Delettre,C., Rossel,M., Meunier,I., Preising,M.,
            Lorenz,B., Carelli,V., Chinnery,P.F., Yu-Wai-Man,P., Kaplan,J.,
            Roubertie,A., Barakat,A., Bonneau,D., Reynier,P., Rozet,J.M.,
            Bomont,P., Hamel,C.P. and Lenaers,G.
  TITLE     Recessive Mutations in RTN4IP1 Cause Isolated and Syndromic Optic
            Neuropathies
  JOURNAL   Am J Hum Genet 97 (5), 754-760 (2015)
   PUBMED   26593267
  REMARK    Erratum:[Am J Hum Genet. 2015 Nov 5;97(5):769]
REFERENCE   3  (bases 1 to 2074)
  AUTHORS   Mootha,V.K., Bunkenborg,J., Olsen,J.V., Hjerrild,M.,
            Wisniewski,J.R., Stahl,E., Bolouri,M.S., Ray,H.N., Sihag,S.,
            Kamal,M., Patterson,N., Lander,E.S. and Mann,M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC166465.1.
            
            On Aug 30, 2012 this sequence version replaced NM_001107644.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166465.1, SRR8487231.122587.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132263
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2074              BC166465.1         5-2078
FEATURES             Location/Qualifiers
     source          1..2074
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20q13"
     gene            1..2074
                     /gene="Rtn4ip1"
                     /gene_synonym="RGD1563384"
                     /note="reticulon 4 interacting protein 1"
                     /db_xref="GeneID:309912"
                     /db_xref="RGD:1563384"
     exon            1..670
                     /gene="Rtn4ip1"
                     /gene_synonym="RGD1563384"
                     /inference="alignment:Splign:2.1.0"
     CDS             397..1587
                     /gene="Rtn4ip1"
                     /gene_synonym="RGD1563384"
                     /codon_start=1
                     /product="reticulon-4-interacting protein 1,
                     mitochondrial"
                     /protein_id="NP_001101114.1"
                     /db_xref="GeneID:309912"
                     /db_xref="RGD:1563384"
                     /translation="MEVLKTCVLRRNACAAVCFWRRKVITRPPYRGISTTSARSTVMP
                     AWVIDKYGKNEVLRFTQNMMLPIIHYPNEVIIKVHAASVNPIDVNMRSGYGATALNMK
                     RDPLHMKTKGEEFPLTLGRDVSGVVMECGLDVRYFQPGDEVWAAVPPWKQGTLSEFVV
                     VSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNAKNCMGKRALILGASGGVG
                     TFAIQVMKAWGAHVTAVCSKDASELVRKLGADEVIDYTMGSVEEQLKSLKLFDFILDN
                     VGGSTETWALNFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGTKALKHLWQ
                     GVHYRWAFFMASGPYLDEIAELVDGGKIRPVIERTFPFSEVPEAFLKVERGHARGKTV
                     VNVV"
     exon            671..822
                     /gene="Rtn4ip1"
                     /gene_synonym="RGD1563384"
                     /inference="alignment:Splign:2.1.0"
     exon            823..891
                     /gene="Rtn4ip1"
                     /gene_synonym="RGD1563384"
                     /inference="alignment:Splign:2.1.0"
     exon            892..1016
                     /gene="Rtn4ip1"
                     /gene_synonym="RGD1563384"
                     /inference="alignment:Splign:2.1.0"
     exon            1017..1065
                     /gene="Rtn4ip1"
                     /gene_synonym="RGD1563384"
                     /inference="alignment:Splign:2.1.0"
     exon            1066..1202
                     /gene="Rtn4ip1"
                     /gene_synonym="RGD1563384"
                     /inference="alignment:Splign:2.1.0"
     exon            1203..1386
                     /gene="Rtn4ip1"
                     /gene_synonym="RGD1563384"
                     /inference="alignment:Splign:2.1.0"
     exon            1387..1479
                     /gene="Rtn4ip1"
                     /gene_synonym="RGD1563384"
                     /inference="alignment:Splign:2.1.0"
     exon            1480..2055
                     /gene="Rtn4ip1"
                     /gene_synonym="RGD1563384"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcggccgggg tcgcctcggg attgcaagcc ctgtttgctc gtcctgctga ggactccctg
       61 cttgtttgct tttttcctta atgggaagga gagcgtaagg aaggaatggc cagagtactg
      121 gctggacgcc atttctgagt ggggagcaca gtagcaattc tattttcttc tgttgctact
      181 ttaggttgag cttgtttctg aaagctcctc ctcccttaat tgaccagtgg gtttggcaga
      241 atttggctga attgaagctt gttcgtttga cccgccccag gtcctctctc cgcctcccca
      301 cccacgttcc tcctttcttt cgcttctttt cccttccttc cttccttttt ttaatttttt
      361 ttttttttga ggacacgttc tccatccctg cgcaggatgg aagttttgaa gacttgtgta
      421 cttagaagaa atgcttgtgc cgccgtgtgc ttctggagaa ggaaagttat cacgaggcca
      481 ccatatagag gcattagtac tacgtctgcg aggagcactg tcatgcccgc ttgggtgata
      541 gataaatatg gaaagaatga agtccttcga ttcacccaga acatgatgtt acctatcata
      601 cactatccaa acgaagtcat tatcaaagtc catgctgcca gtgtaaatcc tatagatgtt
      661 aacatgagaa gtggttatgg ggccacagct ctaaatatga aacgtgatcc cttgcatatg
      721 aaaaccaaag gagaagaatt ccctctgact ctgggtcggg atgtctctgg tgtggtgatg
      781 gagtgtgggc tggatgtgag gtatttccag cctggagatg aggtctgggc tgcagttcct
      841 ccttggaaac aaggcactct gtcggagttt gtcgtggtca gtgggaatga ggtttcacac
      901 aagcccaaat cactcactca cactcaagct gcctctctgc cgtatgtggc cctcacagcc
      961 tggtctgcca taaacaaggt cgggggcctg aatgccaaga attgcatggg aaaacgtgcg
     1021 ctaatcttgg gggcgtcagg tggagttggt acttttgcga tacaggtaat gaaggcgtgg
     1081 ggcgctcatg tgacggcagt ttgctcgaaa gacgccagtg agcttgtgag gaagcttggg
     1141 gcagacgaag tcatcgatta cacgatgggc agtgtggagg agcagctgaa atctctaaaa
     1201 ctgtttgact tcatccttga taatgtaggt ggatcgactg aaacatgggc tctaaatttt
     1261 ctcaagaagt ggtcaggagc cacctatgtg actctggtga ctcctttcct cctgaacatg
     1321 gaccgactgg gcattgccga tggcatgttg cagactggag tcactgtggg cacaaaggca
     1381 ctgaagcatc tctggcaagg agtccattac agatgggcct tcttcatggc cagcggcccg
     1441 tacctagatg agattgcaga gctggtggat gggggaaaga ttcggccggt tatcgagcgg
     1501 accttccctt tttctgaagt ccccgaagcc ttcctgaagg tggagcgcgg ccacgcccga
     1561 ggaaagacgg tggtcaacgt agtttaaata gatgcgttta aatgggtgca tgtggccagc
     1621 cttggagtcg ctggtctcct cgctgagtgc ctctgatcag acagctagcc ctcaccggat
     1681 attctccggt tagactttaa gcttcgtgat ctattcaaaa acctaagcat ggactggtga
     1741 gagcgctcgg caggtcaggt tgcccgcagt ggaagcatgg cctcctgggg tcagttcccg
     1801 gagcccacac aaaggaaggg gaaagaactg attgcaccaa attgttctct cacaccccgt
     1861 gtacacacct cctcagtgat caagaagata cacagtgcgt gtgtgggcac actcgccagg
     1921 cacacttgtg gacctcacag ggaaccttcg gtggtcaggg cctctaccat gtagaaccca
     1981 gggcataagg tttggcggca ggtgccttta cccactgagt catcgcactg gcccaataaa
     2041 aaacttttaa aaaaaaaaaa aaaaaaaaaa aaaa
//
