LOCUS       XP_008771698            1373 aa            linear   ROD 22-FEB-2024
DEFINITION  retrotransposon Gag-like protein 9 isoform X1 [Rattus norvegicus].
ACCESSION   XP_008771698
VERSION     XP_008771698.1
DBLINK      BioProject: PRJNA1074393
DBSOURCE    REFSEQ: accession XM_008773476.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086039) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1373
                     /organism="Rattus norvegicus"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     Protein         1..1373
                     /product="retrotransposon Gag-like protein 9 isoform X1"
                     /calculated_mol_wt=141969
     Region          <642..1072
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1175..1266
                     /region_name="Retrotrans_gag"
                     /note="Retrotransposon gag protein; cl46289"
                     /db_xref="CDD:480629"
     CDS             1..1373
                     /gene="Rtl9"
                     /gene_synonym="Rgag1"
                     /coded_by="XM_008773476.2:220..4341"
                     /db_xref="GeneID:100912526"
                     /db_xref="RGD:6486824"
ORIGIN      
        1 madmsiplhs lrfnnmmkee sgdpqnrgat fprpmtetra evqilhsqlq lptvststsd
       61 pegtstqltt spafdslstp lmgashsgtv spplmsasds gtlspllmta sdsgtlspll
      121 mpvsdsgtls pllmptsdsg tlspllstsd yglmspgmmt ipdfgtmsts lmaapdsaem
      181 splampvpsa gvmsapimst spseaslmlg sdpgemspll ipdmnpgvts tppmtapgse
      241 amsplqitde dteamskvlm talasgeiss llmsgtdsev isslimsala sgetstqptn
      301 pqdsegipsv lmpgsdsgvm sslpmpasgs gampapllsi pdageitlpk pvpdaeamsp
      361 llmtaltstv mpsqlmsasg sgvmspdvtq ninsevmtap plrvaasglm stlptrtsdt
      421 eaapiqlmrv pasgnmstsq ktvpvsgsms tplmavsspv amfteemsnt tsgmmsthlt
      481 mpqtsgmmpi gfmkatanga vsaqqmrgsa sgmmptqpvi ataseimsvs qstvptsgsv
      541 stqktrapvs gpmsttqirt tasgltstpq mkatasgtms iplmtaktsg sastllmrdt
      601 asgvisvpqm rapssgslsk plmtskasgm fmqqmttaaf gatptslird tasgglsmpq
      661 mtdpasggms tlltratasg atstsqmtat tsggmsmlqt rlsgpgatat slmratasem
      721 ipsqpvnmqd sggvaiplmr pvalggmqmr sqgsgtmstp llrasdssem stlltkapss
      781 gerplllmrp pasgeivppp rtpvygtisa phmtttasgv mtmspmkasv pasestalqr
      841 stdsggmstp lmrtavsrtk pipqmmttac gdvcpcpvra aatagispsp vrplasstvs
      901 tplrrpsdga gtaelervlg pgimssaqla amtsgemskp lmrasapgtt pmplmspmts
      961 gemsmplmkt mpsgtmstlq tkvmssrats lpqpinaasg gianpplrap asgavstplm
     1021 rvsgsgmmpm pllratasgg isvpqvtaps sgdvsspllr aptpgimstp qtafgmtpal
     1081 nikvtdsgea stshtrvtap gykstphtts tvpevktppp kevpsfgmlt palcylleeq
     1141 eaargsssve edeeeideek qmkgflddse kmaflvslhl gaaerwsilq mevgnpvsse
     1201 nkaflrrsqg lydslseidi lsavlchpkq gkksvrqyat dflllarhls wsdailrtrf
     1261 leglseavtt kmgriflkva gslkelidrs lytecqlaee kdssgnasqv vptackrnne
     1321 eamenelgcq qqteehqhvp krcyylkehg dpqeslhdhl rqsaglpkap tnk
//
