LOCUS       NM_001100998            1237 bp    mRNA    linear   ROD 17-JUL-2023
DEFINITION  Rattus norvegicus retrotransposon Gag like 8A (Rtl8a), mRNA.
ACCESSION   NM_001100998 XM_001054369
VERSION     NM_001100998.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1237)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PREDICTED REFSEQ: This record has not been reviewed and the
            function is unknown. The reference sequence was derived from
            BC105915.1.
            
            On Aug 13, 2007 this sequence version replaced XM_001054369.1.
            
            ##Evidence-Data-START##
            Transcript is intronless :: BC105915.1, FQ213211.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1237
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq36"
     gene            1..1237
                     /gene="Rtl8a"
                     /gene_synonym="Cxx1a; Fam127b"
                     /note="retrotransposon Gag like 8A"
                     /db_xref="GeneID:679038"
                     /db_xref="RGD:1593086"
     exon            1..1214
                     /gene="Rtl8a"
                     /gene_synonym="Cxx1a; Fam127b"
                     /inference="alignment:Splign:2.1.0"
     CDS             91..432
                     /gene="Rtl8a"
                     /gene_synonym="Cxx1a; Fam127b"
                     /note="CAAX box 1A; family with sequence similarity 127,
                     member B"
                     /codon_start=1
                     /product="uncharacterized protein LOC679038"
                     /protein_id="NP_001094468.1"
                     /db_xref="GeneID:679038"
                     /db_xref="RGD:1593086"
                     /translation="MESKGKVKRPKAYMVRHNRRRRRRNPIPFPELFDGDMDKLPEFI
                     VQTGSYMLVDHKIFDTDELKVTFLITRLKGRALQWVIPYIKIESPLLNDYIGFLNEMK
                     RVFGWEEDEDF"
ORIGIN      
        1 gcaaagccca gctgacccct gctagaatcc cgcgccccgc cagcaaaccc ggccaccaag
       61 cggcaagatc agcggaaaga gcgcagcgcc atggaaagca aaggcaaggt aaagaggccg
      121 aaggcctaca tggtcagaca caaccggcgt cgccgccggc ggaaccccat ccccttccca
      181 gagctgtttg atggcgatat ggacaagctc ccggagttca tcgtgcagac cggctcctac
      241 atgttggtgg accataagat cttcgacacc gacgagctca aggtgacgtt cctcatcacc
      301 cggctcaagg gccgggccct gcagtgggtg atcccctaca tcaagataga gagccctctg
      361 ctcaacgatt acattggctt cctgaatgag atgaagcggg tgtttgggtg ggaggaggat
      421 gaggacttct aggcctctgg caaccctggc ctggggttgg ggcgcctgga gggtgggctg
      481 ctgctgtgtt tgccctgtgg ctgcagccag ggttgctgtg tgcgcccccg ctctgcgcct
      541 ccctcctgct ctgagaactc cccgacttga gatctcgcat gcgtgcccct gtctcctcct
      601 gtgtcctacc tttattccag gaatagctcc ccaggctcct gctgctctgt ccctgccagg
      661 tctggctctg gagaccacaa ggcctcccac tgttgacagc tcagcccaac cctgacatat
      721 ttggacactg tactgggctc cagctgcaag atgggctcct gtcacctaat gaacaaatca
      781 cctgccacct gatggacaga tcacgatgtc cactgcctcc tatatgatgg acagactgta
      841 cccacctgcc ttcaatgcct gcactgactc tgccatttca aaccccttca caaaccatct
      901 gtggactgac tgctgccctt aactgatctg gactcacctg ggaggtacct gggcttccca
      961 cagcccatgg acatggattc accttcagcg ggacccattc cctccctggt cccagaaacc
     1021 tcttgtctct cattttgtct tgtggaccac ttggttttcc tgagaggccg gttttctttc
     1081 tcaatttgca gctgtctctg tgatgtgtgt gcctttgttc aacacagtag cccctggact
     1141 ctttccttct tgtctgctct acctgtacag aatccttttc ctcactttga ataaatatca
     1201 gatgctattt caaaaaaaaa aaaaaaaaaa aaaaaaa
//
