LOCUS       NM_001399726            5086 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus retrotransposon Gag like 6 (Rtl6), mRNA.
ACCESSION   NM_001399726 XM_006242147
VERSION     NM_001399726.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Jan 13, 2022 this sequence version replaced XM_006242147.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR26360176.2437324.1,
                                        SRR26360172.1763831.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-5086              JAXUCZ010000007.1  117564780-117569865 c
FEATURES             Location/Qualifiers
     source          1..5086
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..5086
                     /gene="Rtl6"
                     /gene_synonym="Ldoc1l; RGD1306472"
                     /note="retrotransposon Gag like 6"
                     /db_xref="GeneID:300114"
                     /db_xref="RGD:1306472"
     exon            1..5086
                     /gene="Rtl6"
                     /gene_synonym="Ldoc1l; RGD1306472"
                     /inference="alignment:Splign:2.1.0"
     CDS             648..1379
                     /gene="Rtl6"
                     /gene_synonym="Ldoc1l; RGD1306472"
                     /note="breast cancer, up-regulated 1; leucine zipper,
                     down-regulated in cancer 1-like"
                     /codon_start=1
                     /product="retrotransposon Gag-like protein 6"
                     /protein_id="NP_001386655.1"
                     /db_xref="GeneID:300114"
                     /db_xref="RGD:1306472"
                     /translation="MVQPQTSKTENPASAPGASAQMDDVVDTLTSLRLTNSALRREAS
                     TLRAEKANLTNMLESVMAELTLLRTRARIPGALQITPPISAITSNGTRPMTTPPTSLP
                     EPFSGDPGQLAGFLMQMDRFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQPDS
                     PLRNNYQGFLAELRRTYKPPLKHSRRAQIRKTSASNRAVRERERERQMLCRQLATAGT
                     GPCPVHPASNGTSPAPALPTRGRNL"
ORIGIN      
        1 gcaaccagca ggccctggcc tggttgccag gttcccagcg gccgtctagt ccgccgcgcc
       61 tgcacaaaga ccgcgcggtg accgcgcagc acagcgccgc gacccggcca agccagcccc
      121 acaggaattg ccacccccgc cgcccctgcc cgggaagcag ttccggcggc ctccgtgacg
      181 tgcaggccgg gcgcggcctc gaccctcggg ccatcttggc agcggaggga gcggcggagc
      241 gacaggtaca aacgccgccc ggcccgggcc agcccaggtg ccgccgcctt tgttctcgcg
      301 cgggtgatcg catggcaccc gtgggcatcc gcagcccgag ctccggcagg tgcatcccgc
      361 aaagtctggg cggcgcagga cagcgcatct cgtaaggcct gggcaggtcc agcctatgca
      421 tcctacaagg gctaagcaga tccgtctcga gcatccttca aggcccgagc aggtccagcc
      481 agcggcccac accttgattc tgcgaagcct gcagagagga actgcgtcca ggacaggacc
      541 agcgtcccca ggcttgtcct cgtagactct gcctgggcac acctgcttca gcacccaagg
      601 tctttcgctc tggttctcca gctctctgtg gcttgacttt ggccagcatg gtccaacctc
      661 agacctccaa aacagagaac ccagcctctg cccctggtgc cagcgctcag atggatgacg
      721 tagttgacac tctgacctcc ctgcgcctca ccaactctgc gctgaggcgc gaggcctcca
      781 cactgagggc ggagaaggcc aatctcacca acatgttgga gagtgtgatg gccgagctaa
      841 ctctactgcg cacccgagct cgcatccctg gcgctctgca gattactcca cccatctctg
      901 ccatcacctc caatgggacc cggcccatga caacaccgcc cacctcgctg cctgaaccct
      961 tctcaggaga ccctggccag ttggcagggt tcctcatgca gatggacagg ttcatgatct
     1021 ttcaagcctc ccgcttcccc ggtgaagccg agagagtggc cttcctggta tcccgtctga
     1081 ctggggaggc tgagaagtgg gccatccccc acatgcaacc agacagccct ttgagaaaca
     1141 attaccaggg ttttctggct gagctacgca gaacctacaa gcccccgctg aagcactcac
     1201 gtagagcaca aatccggaag acgtctgcgt ccaatagggc ggtgagggag cgtgagcgtg
     1261 agcggcagat gttgtgtcga caactggcca cagctggcac aggaccctgc ccggtacatc
     1321 cagcctccaa cgggaccagt cccgcaccag ccctgcccac tcgcggccgg aacctttagg
     1381 gacctgccac caccctggta gtctttgtcc gcccaggtag ctagactccg ttgttgagaa
     1441 gagtgtcaat acagtagcat tgccctgttt gaggcacctt tcccacctct ctggtctacg
     1501 ggaggccatc ctgccatctg catcggtcac ccaccctact gtgcgctgtt tttgtttgtt
     1561 tgttcgtttt tgctagcttt acctgcaatt ctatgcatgc tcccccttct gttgcttgca
     1621 atcccagctt ccctagcaat cacaacacag cctcttggac atgtgcctgc ccaggaatca
     1681 tttaggcttg accacctctg caagctcaac ttacggatac ccagcttctg gagtacttcc
     1741 tacgggcgcc tgaacattcc ggagaggaag aagccagctt ggcccggtag ccggctgatg
     1801 tatacctgaa gcagcctgtc catatctggt cactttgcaa gatggccagg aagtcactct
     1861 acgtcccagg gagactttcc tctgttgggg ggaggcctgc attccagtgt actccactgc
     1921 tgttgctggg aaggtttctt ccttcataga catcccgcca gcctctcttc tctcgtgtct
     1981 gcaggagacg ccttcacttc tgcccatgcg tgccgtgttc tgatggcatt aaggaagtcc
     2041 agcattcatc cgccaagtta actgtggacc tggaaccctg ggcacttcca tcaggccgcc
     2101 agaggcaatg gattcctaac attcctgcct cagctctaga agactgaggg ggaccctggg
     2161 gactccattt gctgcctgga tttccaggga aaggctcaca gatgcccact cattcctgcc
     2221 catgtggctc catgataagc cttgtctctt tacagactcc ctccaccttc ccacccaggt
     2281 gccacgtggc ttctcctcaa cctttcagcc acccacactg tctctagggg tccaatgagc
     2341 ctacacaaca cactctctat tcctgggcct aactcctagg ctttgtccaa gaacaaaaaa
     2401 ctggctgggg gccagttcct ctgggagaca ctgagcattt ttagtggggt gtgttggctt
     2461 cttcctgccc cagtctgaag aactggcgaa gagtggccaa ctgctttggt tctcgagtgg
     2521 atatgcgttg cagttccaag gaacaaagcc tcacaggagg atgacctaac gatcagactc
     2581 agccaagcct ctggacaatg acatatctgt catttcaatg ccaaatgaac tgtgtttaca
     2641 tacccacctg gccccttgga gagatgggta cctctcctgg gttttcctgc cctcctctgc
     2701 atggtcttgg cttgaccaca agaaaaaaaa aagcctctga atccaccaaa agacatctct
     2761 ctcctcttgg gagcccagag gctggggcct ggaatctggc ctcttccaga gacttcctct
     2821 gtcatgggga agagtgactg attctaacca acgcagccgc ctttgcaagg ccaggagtct
     2881 tcgatgctag ctgggcttgc agcccacggc cacctgcttc ttgttaactc tgttagccta
     2941 gcagccttgc tgacagccta gaccaaggca ccctgctggc accatggtgc tataggcagg
     3001 tggaagactc ccagggttcg agagtatcgc ctgtccccag cagctaagtc tcatgtcctt
     3061 ccggtagagg ggtcctcagg tgaagctaca gctgctccag aaaaatgggg gaggtgtctg
     3121 tggaggcagg caacaactga aagttttctt tgtggccttc tgagttgggg ttagagaccc
     3181 acccaccgga gaggcaggtc acctgtcctg gctcctcggg tcactgggtg ctggctgtct
     3241 ttgcgttagg ttctgcttca gatccctgag tagttactgg agcccaagcc accttagtca
     3301 gagccatgca ggctgcctgt ctccaggtgt ggcttcctta ccttcttttg ccactccacc
     3361 cttgtgggtc cctactgccg ctctggtggc attggcttgg agattgttct gttcttgatg
     3421 cttgtgtgta ggggaccagt gtggtgatgc cacctgttta ggaccacctc catagctctc
     3481 tgtggcttgg agcctggagc acatgagaga gggttgaggc ttgccctcta ctttggatct
     3541 ggaagagcca cttaggacct gtggctgagg ctctgtcagg gaatgattag tccccagcca
     3601 acacaataag atacaaggcc catgcagctc cagagggaga ctgtgataac tgggcctcaa
     3661 agctgaggaa gactgggagg ggaggctttg tacatatctt aaggttctag tttcttgagc
     3721 tcagaaggca atagggagag gggaatggag gagtttgtgt gaaggagttg cacagctcca
     3781 cattgaaagt tgtggcagta ctgtgcctgt tctccggact ctgttactga cactcatctg
     3841 gtaagtaggg cttcactgtg ttcagcgtct aattgacact gggacctggc cagtgttttc
     3901 tgtgaccttg ggattatctc catgtcccaa agcacacact gactttgagg aaacagcgaa
     3961 gacccatctc cttttcctcc cgctgagtag gtgacaaggc gtgtgtcctc tgtgttagta
     4021 atctgggttg gcctgagaca ggcgcctgtg gctgcagagg acagagccac tactgggtga
     4081 gcatgccctg ggcatcagct tgcaggggga atgaatggca gtggagaagc tggcatgggc
     4141 acagggtgac ttagggagca ggcctggggc ttagctggaa cacactgggt cagggtattg
     4201 ggtggcagac actcggctgt gtagcctgag tgtgaagacc attctctggc cctttgcttg
     4261 ggaagcgtcc atcaggagct tcaccaggac accctgaaat gaggctctga gtaagacgtg
     4321 atagctggag cttgggcaac aggcaggctc cccagtgtct gggaggtccc cacctttgac
     4381 atttctctag gccctcatgt tggacttaat ggcagctggt tcagcacaga gggtagaact
     4441 aaagagagga gtccctaccc aatgccgtca atagctggac cagggagggg aaagaaaatg
     4501 gtaacattca gagttttgat gtttcctttc tgtccccagc ctcatctttc tttgcctctt
     4561 atacagccgt ggtgctgtct gtagacccca ccatgtacat atgacaacac tgtttcgatg
     4621 tgccaccaac cttaccctga gtgactgaac tctcccctca ggcagaggga cgatgctggc
     4681 aggcactctc atatactgac agtgtcaggt tttcctccta ggaaggaacc agagggactt
     4741 cctggggata gagtctctaa ggtgggatta ttggattagt gaaaatgggg ccctctgaga
     4801 cttctaccta cagacaaaat ggttttcaga agtttctgtg tctgttgcac tgccaccagc
     4861 aaggggaagt gttcctgact cagggtcttc tcccagggcc gagttccctg acttgacagg
     4921 accgcagctc catgttttag ttgcatcttt ccatcctagc tcgctgtgag tctttttaca
     4981 cccagtgact gcacttcctc ttttgcagac tgccgctgtc cttgctccac tgatgggcct
     5041 gaccagtttg taagaactcc gtatgtaatt aaagatacta acctgc
//
