LOCUS       XM_039100318            7328 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus retrotransposon Gag like 4 (Rtl4),
            transcript variant X2, mRNA.
ACCESSION   XM_039100318
VERSION     XM_039100318.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7328
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7328
                     /gene="Rtl4"
                     /note="retrotransposon Gag like 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 6 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:680778"
                     /db_xref="RGD:1588188"
     CDS             4536..5441
                     /gene="Rtl4"
                     /codon_start=1
                     /product="retrotransposon Gag-like protein 4"
                     /protein_id="XP_038956246.1"
                     /db_xref="GeneID:680778"
                     /db_xref="RGD:1588188"
                     /translation="MEKCTESPPNLNAETSFLRGGNLIQQPQVQHPADEKPPLTGQVV
                     PPLNSPVMSGPYSGDHLPQFHGNPASVRGFFAQVTAYLTTLDISNPADDARVKHFFDY
                     LSQQMQNCDVLSESSQRNLLKQYENFVLEFQKSFGEPMIQETTPPMNAMVDKGDISPQ
                     DATTSQVHAPNLSYSETDQRDQLQADSTHDEEITDIMDNLPDLITQCIQLDKKHKDRP
                     ELLQSESHVPMVASPNCSQSFLSPIRPLPKDGLKPMQGAHLPVTPAKRARQQETQLCL
                     YCNQAGHFTRDCLAKRSRTPARKKM"
ORIGIN      
        1 aggacggggc agcctgcagg ggcagccgct cctgctctgt agctcggtgg ccaggggtgg
       61 aaagaagccg caagccgcag ccgcagcccc aagtcagccc ccgctgcccc gtcccaccgt
      121 ctcatctctc ccccctcggc agttttactg ggacccagca actctaaaat gcagctttct
      181 atgcaagaaa gacctatgtg ataattaaga gactccttcc ttaagaatga tggtttctgc
      241 agtgctggga gtgtggacta ttcgaagtag actaattcaa gaaacatgtt tgatctgaaa
      301 agcctcatta atcactaatt ataagaattt caccatggta taactctgcc tatttacaca
      361 tggagaacaa tacgtgagag agaagagtag agtgttgtat gcctttggaa gggagccata
      421 atgtcccaag aacaaggtca ccttgatgta tacctatgct tccatctcca cgatagacaa
      481 atgttaccta cctagacctg acctgcatgg aatgctgtca aaggaagtcg tggagacttc
      541 gaaaaaaacc aacacaccat atactacttt ggggctgctt tcagaggtac atttttactt
      601 ctaaaaatga ccccaactgg gtattgaggt acacacctgt aatcttggca cattgggttg
      661 atacctcagg aaaaccaaga attggaggcc agccctggct acagagtagg tttcatccaa
      721 tcaagactaa agagagaaaa ctggtctcca ccctccatcc aaaagtgttc ataatgctaa
      781 aatcagaagg acccttagaa agcccttaac ccaaaggttt tcaaaggtat tcactgaaat
      841 ttctgcttca aaatcacatg tagatcttat ataaaatata tcatatatct aggtcttcac
      901 caagagcaaa tattctatac tctccataga tgaaataaaa aaaatatctg tatgttaaaa
      961 atcccaggag cttctgagat ctctctcttc cctccctcct gtcccccctc gtgtgtgtgt
     1021 gtgtgtgtgt gtgtgtgtgt gtaaatctct gtgtgtgtgt gtgtgtgtgt gtgtgcgtct
     1081 gtgtgtgtat gtattgtctt tctccaatat tcccatgatt aaatctgaga accacatata
     1141 tcaacattaa ctgaaatccc tataaaagta tgcccatgtt cactaagttt ttgagttaga
     1201 atttctggac tatgctaaaa tgtaagagac ccaatactct tcagaataca gataaagata
     1261 tgcaggtcct aaaacagaaa gatagcttgt ccaaggtcat tcttctgaat ggtagaagaa
     1321 tttaagaagt aagtacacac tgatatctct aggaaagtcc agacatattc tcctctgctc
     1381 acacttatga gagggattga tgcttcaact tagtacctgt gaacatcaaa ttccttagaa
     1441 cttctgaagc tcaagataga attttagctt tcctttgttt catgatcaca gataaaacag
     1501 tttaaaaata agacagtata aagtcaccaa gttctcatat acaaaataca ttactgctgg
     1561 cctgagctta aggaagaaaa taatcatttt ggctcactgt tttggaggtt ttactctgta
     1621 atcagttagc cctgttgata tggagtttgg ggcagggcag aagcacactt tcatagagtc
     1681 tagataggaa agagagaaaa gaaagaatct acacagaact cagttttctc cttgaaaatc
     1741 taggtaaatg acctgggccc ttttaccaag cattacttct taagggttcc aacaccatct
     1801 ttgagccatg ctgaaaacca aattcttaag gcatgttctt tttgtggata ttccagacct
     1861 accaatccac acaaatagat ttcttcaaat gtcgcctcaa agagttttgt gtctaaaact
     1921 attaactact gttttaagct aagtaactat gaacaaaatg gttcctttac aaaatttaca
     1981 aagaaacatt tgttgttacg gttttcagag ctgaaacatg tacttattaa gcaaaagctt
     2041 atatctacgc agttcctaga tgatctagtc cagccacatg ggtatgatag tccaaaacct
     2101 atgtgtttga agtttctgct ctgtttctgc tttgtctctt taaggataga tccttcagac
     2161 tcacagtctt tgcaatagca tcttctgtgg tcaacccata gaaggccaat gacctctgga
     2221 aaaagtaatt acccaaatga aatgaacagg tagatttttg ctgaaggatt gagtatttgc
     2281 cactgacaac agtagcattg catgatttgc atgtggacta atgcttttaa ttttagcaag
     2341 tgtttcaccc ttgctacata attaggaaaa tgaaatgctt agccaccttg aatacataat
     2401 tctgtataga atcagaagct ctcacaaaga tatgaaattg ctgagggaag aaagaaaggg
     2461 caaaaggcaa agacataaaa gtaaaagttc taatcatacc cttccaatta aaaaataagt
     2521 ttactggagg tccacaatcc cttcttacct caattctgaa ttcaaagaag tctatgagat
     2581 gtaagtcact ttttcattaa tttgttgcta aaacccagtt ggcagcaaaa cttgacctga
     2641 tttgacatga gtttcatcta taaccaattg ggtatgaata ttcagacatt tttcctgctg
     2701 aaattttaat ggcttaacta tgggatgttt ccccagatac tgaaggaaat gttatataat
     2761 aaacagtaat gcactgtgtt gcctttcaag aatctgaaaa ggtgaaattt gaattataaa
     2821 acacagatgc tacaactatg gacctagaga aattattgct aacatttatg gggcctttgc
     2881 caccaacatg aagctgtgcc agtctacttt catttcaggc aaccatcaaa atctatgagc
     2941 tccttgaagt gaagtggagg ttgatgaaga catcccattt aggactgatg ccccaaggtc
     3001 tctcactctc tgcacattgt ccagttatag atctgtatta gtttccattc actgaaggaa
     3061 gaagtttctc tgatgatggc tgagcaagac actaatctat gaatacagca agcagaatgt
     3121 cattaagagt tattttatgg ggttgggaat ttagctcagt ggtagagcgc ttgcctagca
     3181 agcgcaagtc cctgggtttg gtccccagct ctgaaaaaaa gaaaagaaaa aaaaagagtt
     3241 attttatttt tatatactta tagaagaaaa acagtttttg gtttatttgt aggtccatgg
     3301 cctatctatt gagagactta tattttgaag gaatcagtgg taacatgttt ttgaacactg
     3361 gtagctcatt gaagcccatt taaatggtgt ctttcacaag gaagggtagt tcaaagaact
     3421 gaaataagag tagttcaaac aaactgatat gtcccaggtt tgtgaattat tttcaatttt
     3481 tattggttac cttcttatta tcaatgcttg gaggagtgtt gaacattttt atctttacac
     3541 ttttaagaac attcagttct tatttgtgaa gttttcaatc ttaggtgttc atcttccttg
     3601 tgatgtctta attatttcca tggcaacata gatatgaccc ttgacaagga tgtggtagaa
     3661 aaaataactt aacaacactg catgcagata tcaggtagca atgaagggtt aaggtggtga
     3721 gtatgaacta cagtcagtga tttttccaat ttagactaga taattctcaa actacaatac
     3781 actttccaat cacattggaa atgttggcaa aggatgaaaa gttattcaat ggatccttgc
     3841 tggaactctg ttttctctat tcttaaaaac acctctggta agatccgtgc tcttgttccc
     3901 agatcaggtt ttgagtggtc aggagcatga aatatcctga cactcaagta gaatatgatt
     3961 agctgggaga agtgctgctt cagattactt ctatgaccag catcataaat ctgatatgaa
     4021 tgagctaggt gaccttggac aaacattttt gtttctctga gtctctattt ttaatctgtg
     4081 aaattataaa tcttgttagt ttggatggtc accaagatta ttttagactc tagtctaaaa
     4141 atcctttgac agtgactata aaagacattt tagaataatg gggtagtgtg aagtttaata
     4201 tctatatttg aaaagaaagg ggaggagaaa attactgtgt ctattatata tatatttttt
     4261 ttcttaattc atatcctctc ttctatgtat cctaaggtga tgtgtgtctt cggaatgtgt
     4321 aatatactga cattttccgt gaagaagcag tgatgtatag aagataacat tttggtggca
     4381 tctcttcagc tcaactctta ttgatgttga acaggtgttt tctgcttgtg cacaacactg
     4441 tcctttcaga tctcaaacca aaccactgcc tgtcccttgg tcctgggaac tggcactgaa
     4501 tttctattca gttctacata agtgcaagag acacaatgga gaagtgtaca gaatctccac
     4561 caaacttaaa tgcagagact tcctttttga gaggaggcaa tctgattcag cagccacaag
     4621 tgcaacatcc agctgatgag aaacctcctt taacggggca agttgtacct cccctgaata
     4681 gcccggtaat gtctgggcct tactcaggtg accatctccc tcaatttcat ggtaacccag
     4741 ccagtgtcag aggatttttt gctcaggtga ctgcctattt gacaactctg gacatttcta
     4801 atcctgcaga tgatgccaga gtcaagcact tttttgacta cctgtcacag cagatgcaaa
     4861 attgtgatgt cctatctgag tcctcacaga gaaatctact gaaacaatat gagaactttg
     4921 ttcttgagtt ccagaagtca tttggtgaac caatgataca agaaacaact cctccaatga
     4981 atgctatggt tgacaaaggt gacatctctc cgcaggatgc tactacttcc caagttcatg
     5041 ctccaaattt gagttatagt gagaccgatc agagagacca gctccaagct gactctactc
     5101 atgatgaaga aatcacagat ataatggaca acctaccaga tttgatcact caatgcattc
     5161 agctggacaa aaaacacaaa gacaggccag aactcctaca gtcagaaagt catgttccaa
     5221 tggttgcttc cccaaattgt agccagtcct ttctcagccc catacggcca ctaccaaagg
     5281 atgggcttaa accaatgcag ggagcccacc tgcctgtaac tccggccaaa agagcccgcc
     5341 agcaagaaac tcagttatgt ctctactgta atcaggctgg tcacttcaca agagattgcc
     5401 ttgctaaacg ttctagaact ccagcaagga aaaaaatgta gctagcttac tagtaagagg
     5461 aggataagaa atcactttgt aaatacatac cctttcacca ttggccttag tgatttataa
     5521 acttttacaa acttcaaaat acaaagttgc tgtggcatca cattggaaaa cagccaagaa
     5581 catttacatc cccaggaatt tgaataagca gaccttgttg gttgaaaggt agcctctccc
     5641 taaacttatt ctaacaatga tgaagataat taccagaaac ttcattagtt gggaccaatc
     5701 actttaagag ttctaaaagt ttgcagacgc gactctctac agtctgagct aaaaaaaaaa
     5761 tcaaccaaac aaaaatccct taagatgtac tgagattcac atccctacca aaggatgcaa
     5821 tcatcgtggt tgattctatt ggaccaaatc ccatagctga tgtgcctagg actgagccca
     5881 aagcttttat cctccttttt attaatctac ttcttagtga cttgtttgtt caggtctttt
     5941 gtttgcaatc acagtggcat caccatgtcc aacaatatcc ttgtcatcga gggaccagaa
     6001 tctgtattct cttctagcta ttaattagac tctagtgcca acacatgcca atcatcctgg
     6061 aatgaaatct ctgacacctt ttatacagct atatattttg ttgccatcag aagactcctg
     6121 cttactcaac atgctgaact tctcggctat tgctaaacca aattatatgg tcattggaac
     6181 tgaatattga ttaattattg gcaactttct ttgacaaatg tcctctctgg cagttaacat
     6241 actttgagcc tgccaatcca agtttagtca tatctacact aatgttccta ttttagattt
     6301 ggatgtatat atggctaagt ctaatggttt aagataaatg accaagtaag gtatttaaag
     6361 acatttgttt gaagtatcta tcatagttac tgtaacagca gcatgttctt gctgcccgaa
     6421 cagagacaaa tctgaactaa ggactggctt tccagcctgc catagttggt gacttcctag
     6481 gcctcaccac ttaataatca ctgccagttg ctaccaaact atactcctct ggaccacctt
     6541 tggctattgt tatctaattg aggaccttgg gaagcaatgg gatgacatag aactttcaga
     6601 accaactcat ctaaaaactc gtgtgcatag acattaacac catctgtgca caaaatctca
     6661 agaactgggg tgttcttttg cttgtcttgt actcttggca cacatcagct ctatgtataa
     6721 atagatgatg taggtgatgc ttctgcaaaa aaaaaaaaag gaatgatgtg ctagaaaagc
     6781 acaacttctt agaaatgtta acaactcctg ttgctcagta tttgttggta attaccagtt
     6841 ctttgttcac tgcttcttgg tgctggtgta tttccccata atggatttcc tgaaatcagt
     6901 cattgcatag tccttaatag ccactcagaa catgaagtgc cactgcactt tggtcttgtt
     6961 ccctgagaat tgtgcttcgc tttcaatact taatcccaga tgggactcta ctgttcttct
     7021 cttatagcac caagaaatat ctcttcatcc atcagtgcct cactaaccac tgtgccgatc
     7081 catacttaca ttcacaagca gtttgttcct ttgtcagtag cttgctatgt attcacagta
     7141 cttcataaac gaccataatg agatgtgaat gcacatgtcc cgactgtgct aagaaatccc
     7201 cactgcatta ctgggattgt acgagaaact ttaccaagtg gatttatttg aatgttgagt
     7261 gagtctagga ttttcagaaa gaatcctcat ccatctcttc taattctata ataaaggact
     7321 aatccaaa
//
