LOCUS       NM_001401152            3043 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus retrotransposon Gag like 3 (Rtl3), mRNA.
ACCESSION   NM_001401152
VERSION     NM_001401152.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643289.45006.1,
                                           SRR26643299.68275.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760475
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-62                JAXUCZ010000021.1  76023787-76023848   c
            63-3043             JAXUCZ010000021.1  76020183-76023163   c
FEATURES             Location/Qualifiers
     source          1..3043
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq22"
     gene            1..3043
                     /gene="Rtl3"
                     /gene_synonym="RGD1564805; Zcchc5"
                     /note="retrotransposon Gag like 3"
                     /db_xref="GeneID:317221"
                     /db_xref="RGD:1564805"
     exon            1..62
                     /gene="Rtl3"
                     /gene_synonym="RGD1564805; Zcchc5"
                     /inference="alignment:Splign:2.1.0"
     exon            63..3043
                     /gene="Rtl3"
                     /gene_synonym="RGD1564805; Zcchc5"
                     /inference="alignment:Splign:2.1.0"
     CDS             265..2133
                     /gene="Rtl3"
                     /gene_synonym="RGD1564805; Zcchc5"
                     /note="zinc finger CCHC domain-containing protein 5; zinc
                     finger, CCHC domain containing 5; zinc finger CCHC-type
                     containing 5"
                     /codon_start=1
                     /product="retrotransposon Gag-like protein 3"
                     /protein_id="NP_001388081.1"
                     /db_xref="GeneID:317221"
                     /db_xref="RGD:1564805"
                     /translation="MVEDLAASYVALKLENEILQAQVKRLTEENAALQAQIPELQKSG
                     AAKEHEPPRKPSEAQELPESPELLELPAARASQNPWEPPATTEPREPTKIREPREPSA
                     ISKLRGPPEIKEPREPSTIRKPRSPSEIKEPRELSAIRDFMGIPEIQEPQEPQEPQEP
                     QETNESGGPSAITEFRGSPEIKKSHSSPKFKECWGLQEFPKVKESWEPPESLDSTTAW
                     GLQELSKYKKAHKPPELQDLAAWNPATVKEHQEIQKALESPATQKPQASPRGYDLPAV
                     GEAEPTDNQGTPALKELQNSQLHNPTNDAEPQTVPEHQETSSQPEPLEHPATQETLEP
                     QVLQEPLDPSDAKEFLELSVPEESLEGLIVVRTGTEQAHHEIEAPTLPLEYPLAFSED
                     FQKLSEFLVQLNSYLRTRGYPTEAALVSFVGSFFSGEAGRLFQPLLDSQTSLLEQFER
                     LLRALQDTFDNPDSLEVANQGLPQLRQGEGLAPRYSTRFHLIAQELNLGESTLCIQFQ
                     EELASSIQNELSCISPVTNLSDVTIECVTLEEKASGGADSSSSSSEEENGSESPPTEN
                     QPVQATSNRPHLSEAERARRREGHLCLYCGHPGHFARDCPVKPQRAQQAGNMEARR"
ORIGIN      
        1 acagttctct gctcagcgat ggctacgcag acagcagagc tccagccctt catctctgaa
       61 tgtgtgtctc acacctcccg gtgctgagct ctgaggctcc cagtgacctc ttggtaatca
      121 gccttggctg ggtccaaatc cccacccctt ggaaaagtca cggagcctga cgtctgcctg
      181 tgagccgctt tcagcaaaga cctcacaagc agctactcaa tctcttggta gcaaattgcc
      241 aaaccaggcc cgtttcctca aaagatggta gaggacttag cagcttccta tgttgctctg
      301 aaattggaga atgaaattct gcaggctcaa gtgaagaggc tcacggaaga aaatgctgcc
      361 ctccaggccc agataccaga gctccagaaa tccggagcag ccaaggagca tgaaccaccc
      421 cgaaagccct cagaggccca agagctccca gagtccccag agctactgga acttccagca
      481 gccagggctt cacaaaaccc ctgggaaccc ccagcaacca cagagcccag ggagcccaca
      541 aagatcagag agcccaggga accctcagcc attagcaagc tcaggggacc cccagagatc
      601 aaggagccca gggaaccttc aaccattaga aagcccagga gcccttcaga gatcaaggag
      661 cccagggaac tttcagccat cagagacttc atgggaatcc cagagatcca ggagccccag
      721 gagccccagg agccccagga gccccaagag accaatgagt ctggaggacc ctcagccatc
      781 acagagttca ggggatcccc agagatcaag aagtcccatt catccccaaa gttcaaggag
      841 tgctggggac tccaggagtt tcctaaggtc aaggagtcct gggagccccc agagtccctg
      901 gattccacaa cagcctgggg actccaagag ctttcaaagt acaagaaggc tcacaaaccc
      961 ccagagcttc aggatctcgc agcctggaac cctgcaacag tcaaggaaca ccaggagatc
     1021 cagaaggctc tggagtcccc agcaacccag aagccccagg catccccaag gggttatgat
     1081 ctcccagcag tcggtgaggc ggagcccaca gacaaccagg gtaccccagc cctcaaggag
     1141 ctccagaatt cacagctcca caaccctaca aatgatgcgg agcctcagac ggttccagaa
     1201 caccaggaga cctcatcaca gcctgagccc cttgagcatc cagctaccca ggagactctg
     1261 gagcctcagg tgctccagga gccccttgac ccctcagatg ccaaggagtt cctagaactc
     1321 tcagtacctg aagagtccct agagggccta atagttgtga gaacaggaac agaacaggct
     1381 caccatgaaa tagaggctcc aactttgccc ctagagtacc ctttggcctt cagtgaggat
     1441 tttcagaaac tctctgagtt tttagttcag ttgaacagtt acctaagaac cagagggtat
     1501 cccactgaag cagctctcgt gagctttgtt ggcagcttct tctcaggtga ggcaggaagg
     1561 ttgttccagc ccttattaga tagccaaacc tccctgctgg agcaatttga acggctcctg
     1621 cgagcgcttc aagatacttt tgacaatcca gacagtttgg aagttgctaa ccagggcctc
     1681 cctcagcttc gccaaggaga aggccttgct cccagatact caacccgttt ccacctcatt
     1741 gctcaagagt taaatttggg tgaaagcaca ctctgcatcc aatttcaaga agagcttgcc
     1801 agttctattc aaaacgaact gtcttgcata agtccagtca ccaacctatc tgatgtgacc
     1861 attgagtgtg tcactctaga agagaaggca agtggtgggg ctgattccag ttcatcatcc
     1921 tctgaagagg aaaatgggtc cgagagtcca cccactgaaa accagcctgt tcaagctaca
     1981 agtaatcgcc ctcatctcag tgaggctgaa cgggccagac gccgcgaagg tcacttgtgc
     2041 ctctactgtg gccatcctgg tcattttgcc agagactgcc ctgttaagcc tcagcgtgcc
     2101 cagcaggcgg gaaacatgga ggcccggcgg taagggggat cccgggcggg ccaatctata
     2161 aatacgcgtc cccctctctt cccatatcta tgtcccgtac cctatggcta actgttgaga
     2221 ttaggcttgg aagacggcag ttctttgaac aagcaatggt ggattcaggc tcctacagaa
     2281 acagcatcga ccgctctgtg gttcttcgag agaagatacc aatccgcaat aacatcttcc
     2341 ctctcatgct cgaaactgtc gatgggcgtc cactgattaa tggacccata accaaagaaa
     2401 cgccacctgt tgaagtcaaa attggaaatc acgttgaaga gctccagttt gacattattc
     2461 atgcaccacg ctaccctctg attcttggaa tccattggct tgagacacat gacccgaaca
     2521 tcgagtggag tacccgaact gtgtcctttc catcgcatta ttgtcattac aattgtttca
     2581 ggaacaggtg gaatcgaaga cggcgtgatg aaataattgc tggttagatg gtgggtccta
     2641 gtgacttctg accatctgcc ttctgttacc tcagctgtca tcagcatttg ctgctctctg
     2701 aatcttccag tgaacctctg gctatgaaag aaggctacct gtacaacgac gctgcctctt
     2761 ggatgatgga ctgaacctga cgactttgag ctgcttttcc ccaccaacct tgcatgcctc
     2821 cctctttgaa ccctacatta tgtagggctg tttttttttt aatcacaatt cacactaaca
     2881 atatgcatgc aaatagatat tagaaactaa tactgaaaag tgtagctgtt agattgattt
     2941 tgtttttttt aaccaaaatt tatcacatat ttctgtcttt tttttcaata aaagcaattt
     3001 tcaagtaata ttttaagtaa tcaataaaca atggaaactt tta
//
