LOCUS       NM_001004227            1378 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus RNA 3'-terminal phosphate cyclase (Rtca), mRNA.
ACCESSION   NM_001004227 XM_215694
VERSION     NM_001004227.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1378)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   2  (bases 1 to 1378)
  AUTHORS   Genschik,P., Billy,E., Swianiewicz,M. and Filipowicz,W.
  TITLE     The human RNA 3'-terminal phosphate cyclase is a member of a new
            family of proteins conserved in Eucarya, Bacteria and Archaea
  JOURNAL   EMBO J 16 (10), 2955-2967 (1997)
   PUBMED   9184239
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC079374.1.
            
            On Sep 10, 2004 this sequence version replaced XM_215694.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079374.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16418988, SAMN16676806
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1378
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q42"
     gene            1..1378
                     /gene="Rtca"
                     /gene_synonym="Rtcd1"
                     /note="RNA 3'-terminal phosphate cyclase"
                     /db_xref="GeneID:295395"
                     /db_xref="RGD:1303111"
     exon            1..59
                     /gene="Rtca"
                     /gene_synonym="Rtcd1"
                     /inference="alignment:Splign:2.1.0"
     CDS             15..1115
                     /gene="Rtca"
                     /gene_synonym="Rtcd1"
                     /EC_number="6.5.1.4"
                     /note="RNA terminal phosphate cyclase domain 1"
                     /codon_start=1
                     /product="RNA 3'-terminal phosphate cyclase"
                     /protein_id="NP_001004227.1"
                     /db_xref="GeneID:295395"
                     /db_xref="RGD:1303111"
                     /translation="MEGQRVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRS
                     TPGLRPQHLSGLEMVRDLCDGHLEGAEIGSTEITFTPEKIRGGVHTADTKTAGSVCLL
                     MQVSMPCVLFAASPSELRLKGGTNAEMAPQIDYTMMVFKPIAEKFGFTFNCDIKTRGY
                     YPKGGGEVIVRMSPVKRLDPINLTDRGSVTKIYGRAFVAGVLPLKVAKDMAAAAVRCL
                     RKEIRDLYVSIQPVQEARDQAFGNGSGIIIVAETSTGCLFAGSSLGKRGVNADKVGIE
                     AAEMLLANLRHGGTVDEYLQDQLIIFMALASGISRIKTGPVTLHTQTAIHFAEQLAKA
                     KFTVKKSEEEEDASKDTYIIECEGVGMANPHL"
     exon            60..160
                     /gene="Rtca"
                     /gene_synonym="Rtcd1"
                     /inference="alignment:Splign:2.1.0"
     exon            161..304
                     /gene="Rtca"
                     /gene_synonym="Rtcd1"
                     /inference="alignment:Splign:2.1.0"
     exon            305..428
                     /gene="Rtca"
                     /gene_synonym="Rtcd1"
                     /inference="alignment:Splign:2.1.0"
     exon            429..487
                     /gene="Rtca"
                     /gene_synonym="Rtcd1"
                     /inference="alignment:Splign:2.1.0"
     exon            488..629
                     /gene="Rtca"
                     /gene_synonym="Rtcd1"
                     /inference="alignment:Splign:2.1.0"
     exon            630..754
                     /gene="Rtca"
                     /gene_synonym="Rtcd1"
                     /inference="alignment:Splign:2.1.0"
     exon            755..813
                     /gene="Rtca"
                     /gene_synonym="Rtcd1"
                     /inference="alignment:Splign:2.1.0"
     exon            814..908
                     /gene="Rtca"
                     /gene_synonym="Rtcd1"
                     /inference="alignment:Splign:2.1.0"
     exon            909..1013
                     /gene="Rtca"
                     /gene_synonym="Rtcd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1014..1354
                     /gene="Rtca"
                     /gene_synonym="Rtcd1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagacgcgcc ggcaatggag gggcagcggg tggaggtgga cggcgggatc atggaagggg
       61 gcggccagat cctcagggtc tccaccgccc tgagctgcct cctgggtctc cccttgcgcg
      121 tgcagaagat ccgggcaggc cgcagcacgc ccggcctcag gcctcagcat ttatctggac
      181 tggaaatggt tcgggatttg tgtgacggac acctggaggg agcagagatc ggctcaacag
      241 agataacctt tacacccgag aagatcagag gtggagtcca cacagcagat accaagacag
      301 cagggagtgt gtgcctcttg atgcaggtct caatgccctg tgtcctgttt gctgcgtctc
      361 cgtcggagct ccgtctgaaa ggaggcacga acgctgagat ggcgccgcag attgattaca
      421 cgatgatggt tttcaagcca attgctgaga agtttggttt cacatttaat tgtgacatta
      481 aaacaagggg ctattaccca aaagggggtg gtgaagtgat tgtccgaatg tcaccagtta
      541 aacggttgga cccaataaat ctgactgatc gaggctctgt gactaagatt tatgggagag
      601 ctttcgttgc cggtgttttg ccactaaaag tggcaaaaga tatggcggcg gcagctgtgc
      661 ggtgcctcag gaaggagatc cgggatctgt acgtcagcat ccagcctgtg caggaggcca
      721 gggaccaagc cttcggcaat ggcagcggaa tcatcattgt tgctgagaca tccactggct
      781 gcttgtttgc tggatcatca cttggcaaaa gaggtgtgaa tgcagacaag gttggaattg
      841 aagctgctga aatgctgtta gcaaatctta gacatggtgg cactgtggac gagtatctac
      901 aagaccagct aattattttc atggcgctag ccagtggaat ttccaggata aagacgggac
      961 cagtcacact ccacacgcag accgctatac attttgctga acagctagca aaggccaaat
     1021 ttactgtgaa gaaatcagaa gaggaggaag atgcctctaa ggacacttac atcatcgagt
     1081 gtgaaggagt tgggatggca aatccacacc tctagggtgt tcactgacgc tctacctcct
     1141 tgttgtgcta acttactcca tatatgcagc acagtgagta agacgtcagg cgttacagga
     1201 cttgactcgc tttggagatg aagtttggtt ctttccgtgg ctgagaatgc ctcatcatgt
     1261 taagtctgtt gaatatctcc caagatagac ttggtgaata ttataatatt aatattcagt
     1321 attaatattg aaataaatag ttgtctaaac cctaaaaaaa aaaaaaaaaa aaaaaaaa
//
