LOCUS       NM_001014193            1515 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus arginine and serine rich protein 1 (Rsrp1), mRNA.
ACCESSION   NM_001014193 XM_342944
VERSION     NM_001014193.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1515)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1515)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB811984.1, CO405856.1, BF282923.1 and BP475626.1.
            
            On Jun 22, 2007 this sequence version replaced NM_001014193.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ214327.1, FQ230600.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-373               CB811984.1         12-384
            374-917             CO405856.1         136-679
            918-1435            BF282923.1         1-518               c
            1436-1515           BP475626.1         227-306
FEATURES             Location/Qualifiers
     source          1..1515
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..1515
                     /gene="Rsrp1"
                     /gene_synonym="RGD1359529"
                     /note="arginine and serine rich protein 1"
                     /db_xref="GeneID:362626"
                     /db_xref="RGD:1359529"
     exon            1..158
                     /gene="Rsrp1"
                     /gene_synonym="RGD1359529"
                     /inference="alignment:Splign:2.1.0"
     exon            159..772
                     /gene="Rsrp1"
                     /gene_synonym="RGD1359529"
                     /inference="alignment:Splign:2.1.0"
     CDS             211..1113
                     /gene="Rsrp1"
                     /gene_synonym="RGD1359529"
                     /note="UPF0471 protein C1orf63 homolog"
                     /codon_start=1
                     /product="arginine/serine-rich protein 1"
                     /protein_id="NP_001014215.2"
                     /db_xref="GeneID:362626"
                     /db_xref="RGD:1359529"
                     /translation="MSSAAVSKYVNDMWPGSPQEKASPSTSGSGRSSRLSSRSRSRSS
                     SRSSRPHSRSSSRSSSRSHSRPRRSRRSRSRSRSRRRHQRKYRRYSRSYSRSRSRSRG
                     HRYYRDSRYEQPRRYYQSPSPYRSRSRSRSRGRSHHRRSYYAITRGRRYYGFGRTVYP
                     EDRPRWRERSRTRSRSRSRTPFRLSEKDRMELLEIAKANAAKALGTANFDLPASLRAK
                     EASQGAVSCSGPKTEHSEKQTEVGTKNASEKSAAAQRNIAFSSNNSVAKPLEKTTKAA
                     VEETSSGSPKIDKKKSPYGLWIPV"
     exon            773..909
                     /gene="Rsrp1"
                     /gene_synonym="RGD1359529"
                     /inference="alignment:Splign:2.1.0"
     exon            910..996
                     /gene="Rsrp1"
                     /gene_synonym="RGD1359529"
                     /inference="alignment:Splign:2.1.0"
     exon            997..1515
                     /gene="Rsrp1"
                     /gene_synonym="RGD1359529"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1412..1417
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rsrp1"
                     /gene_synonym="RGD1359529"
     polyA_site      1440
                     /gene="Rsrp1"
                     /gene_synonym="RGD1359529"
     polyA_site      1515
                     /gene="Rsrp1"
                     /gene_synonym="RGD1359529"
ORIGIN      
        1 gtcgctgcgg acttcagttc gcatccggac ttcgtcggtg aaggttcctc tgctgttttg
       61 tcggttggaa cgggaacctc gcccgcttag ggtcctggtc acagagaaag gtgcccgcta
      121 ggcctctctc gcccttgcga gcgcttcatc agtttaagtc cctagacgtc gttgcgttcg
      181 cggacggaac cccgatctga gaaggaagtc atgtcttcgg ccgccgtgtc caagtatgtg
      241 aacgacatgt ggcccggctc tccgcaggag aaagcctcgc cgtccacctc gggctcgggc
      301 cgctccagcc gcctgtcttc gcgctcccgc agccgctctt cgtcccgcag ctccagaccc
      361 cactcccgca gctccagccg ctcgtcctcg cggagccata gccggccgcg gaggagcaga
      421 cggtcccgat cccgatcccg gtcccgcagg cgccaccagc gcaagtaccg gcgatactcg
      481 cggtcgtact cacgcagccg atcgcggtcc cgcggccacc gctactaccg agacagccgt
      541 tacgagcagc cgcggaggta ctaccagtcg ccgtcgccct accggtcccg gagcaggtcg
      601 cgctcccgtg ggaggtccca tcaccggagg tcgtactacg cgatcactcg agggcggcgc
      661 tactatggct tcggccgaac cgtgtacccg gaggatcgcc ccaggtggcg ggaaagatcc
      721 aggaccaggt cgcgcagcag gagcagaacc ccttttcgcc tgagtgagaa agatcgaatg
      781 gagctgctag aaatagcaaa agccaacgca gcaaaagctc taggaacagc caactttgac
      841 ctgccagcaa gtctccgtgc caaggaagca agccagggag ctgtttcctg cagtgggcca
      901 aagacggagc attcagaaaa gcagactgaa gtgggaacta aaaatgccag tgagaaatct
      961 gctgctgcac agagaaacat agcgttcagc tctaataatt ctgtagcaaa gcctctagag
     1021 aaaacaacga aagctgctgt tgaagagacg tcatcaggat caccaaaaat agataagaaa
     1081 aaaagtcctt atggactgtg gatacctgtc taaaggaaaa ctaaggggtt gcctaaaact
     1141 gcactttact gaggggttcg tgtccagcat cagctcacct gcctgagtaa tctcagcagt
     1201 aaatgtgatt gaaatccatt acagaaagag gcttaatggt gccgtgttca tgggtgaggt
     1261 ttctcttgaa gatgtgagga tacagatgac ccagagaatt gcatacaggt ggggatcttg
     1321 tacatacctg taagtattgt atagtatcgc ttatatacaa aggtgaattt ttataaagac
     1381 acagttgcaa actgtatttt gtatatttgt taataaactt tttgtcttga tttttatgga
     1441 tatggaatgt gtctgtctac atctgaagaa gaaacccttt ctgaaaacag acaatacagg
     1501 atttatgaat tcata
//
