LOCUS       NM_001401170            1863 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus arginine and serine rich coiled-coil 2 (Rsrc2),
            transcript variant 2, mRNA.
ACCESSION   NM_001401170 XM_006249338
VERSION     NM_001401170.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1863)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On Feb 3, 2022 this sequence version replaced XM_006249338.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22399481.1291903.1,
                                           SRR22399492.64046.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-90                JAXUCZ010000012.1  38500782-38500871
            91-247              JAXUCZ010000012.1  38504757-38504913
            248-291             JAXUCZ010000012.1  38506187-38506230
            292-482             JAXUCZ010000012.1  38508733-38508923
            483-686             JAXUCZ010000012.1  38510688-38510891
            687-809             JAXUCZ010000012.1  38512592-38512714
            810-889             JAXUCZ010000012.1  38515834-38515913
            890-1122            JAXUCZ010000012.1  38517809-38518041
            1123-1212           JAXUCZ010000012.1  38518517-38518606
            1213-1863           JAXUCZ010000012.1  38520065-38520715
FEATURES             Location/Qualifiers
     source          1..1863
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q16"
     gene            1..1863
                     /gene="Rsrc2"
                     /note="arginine and serine rich coiled-coil 2"
                     /db_xref="GeneID:360807"
                     /db_xref="RGD:1564882"
     exon            1..90
                     /gene="Rsrc2"
                     /inference="alignment:Splign:2.1.0"
     CDS             85..1392
                     /gene="Rsrc2"
                     /note="isoform 2 is encoded by transcript variant 2;
                     arginine/serine-rich coiled-coil protein 2;
                     arginine/serine-rich coiled-coil 2"
                     /codon_start=1
                     /product="arginine/serine-rich coiled-coil protein 2
                     isoform 2"
                     /protein_id="NP_001388099.1"
                     /db_xref="GeneID:360807"
                     /db_xref="RGD:1564882"
                     /translation="MAAIDTERDGLAPEKTSPDREKKKEQSDISVSPRASKHHYSRSR
                     SRSRERKRKSDNDGRKHRSRSRSKEARRHESKDKSSKRHKSEEHNDKEHSSDKGRERL
                     NSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRDRKKSRSRSR
                     DRKKSRSRSRDRKRRIRTRSRSRSRHRHRTRSRSRSRSRSRDRKKRIEKPRRFSRSLS
                     RTPSPPPFRGRNTAMDAQEALARRLERAKKLQEQREKEMVEKQKQQEMAAAAAATGGS
                     VLNVAALLASGTQVTPQIAMAAQMAALQAKALAETGIAVPSYYNPAAVNPMKFAEQEK
                     KRKMLWQGKKEGDKSQSAEIWEKLNFGNKDQNVKFRKLMGIKSEDEAGCSSVDEESYK
                     TLKQQEEVFRNLDAQYEMARSQTHTQRGMGLGFTSSMRGMDTV"
     exon            91..247
                     /gene="Rsrc2"
                     /inference="alignment:Splign:2.1.0"
     exon            248..291
                     /gene="Rsrc2"
                     /inference="alignment:Splign:2.1.0"
     exon            292..482
                     /gene="Rsrc2"
                     /inference="alignment:Splign:2.1.0"
     exon            483..686
                     /gene="Rsrc2"
                     /inference="alignment:Splign:2.1.0"
     exon            687..809
                     /gene="Rsrc2"
                     /inference="alignment:Splign:2.1.0"
     exon            810..889
                     /gene="Rsrc2"
                     /inference="alignment:Splign:2.1.0"
     exon            890..1122
                     /gene="Rsrc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1123..1212
                     /gene="Rsrc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1213..1863
                     /gene="Rsrc2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtctgtggc gaagcttcga ggcggccagt actgttgagt gcgacaagca gaggcgccgc
       61 cttagcggcc tggactcaaa aacaatggcg gctattgata cagaacgaga tggattagcc
      121 ccagaaaaga catcgccaga tagagaaaag aagaaagaac agtcagatat atctgtttct
      181 cctagagcct caaaacatca ttattcaagg tcgaggtcaa ggtcaagaga aagaaaacga
      241 aagtcagata atgatgggag aaagcacagg agccggagca gaagcaaaga ggcaagaaga
      301 catgaatcca aagataagtc ctctaagaga cacaagtctg aggagcacaa tgacaaagaa
      361 cattcttctg acaaaggaag agagcgatta aattcatctg agaatggtga ggacagacat
      421 aaacgcaaag aaaggaagtc gtcacggggc agaagtcact cgaggtctag atctcgtgag
      481 aggcgccatc gcagtagaag cagggaaagg aagaagtctc ggtcaaggag tagggatcgg
      541 aaaaaatctc gatccagaag cagagacagg aagaagtcaa gatccagaag cagggataga
      601 aaacggagga tcagaacacg ttcccggtca agatccagac acaggcatag gactagaagc
      661 aggagcagat cacggagtcg aagtcgagat agaaagaaga gaatcgaaaa accaagaaga
      721 tttagcagaa gcctaagccg gacacctagt ccgcctccct tcagaggcag aaacacagca
      781 atggatgccc aagaagcact agctaggaga ttagaaaggg caaagaaatt acaagaacaa
      841 cgagaaaagg aaatggttga aaaacaaaaa caacaagaaa tggctgcagc agctgcagcc
      901 actggaggtt ctgttcttaa tgttgctgca ctcttggcat cgggaacgca agttactcct
      961 cagatagcta tggcagctca aatggcagcc ctgcaagcta aggccttggc agagactggc
     1021 atagctgtgc ccagctacta taacccagca gctgtgaatc ccatgaaatt tgctgagcaa
     1081 gagaaaaaga ggaaaatgct ctggcaaggc aagaaagaag gcgacaaatc tcagtctgct
     1141 gaaatatggg aaaaattgaa ttttggaaac aaggaccaaa atgtcaaatt taggaagtta
     1201 atgggcatta agagtgaaga tgaagccggc tgtagctctg ttgatgaaga aagttacaag
     1261 actttgaaac aacaagaaga agtttttcga aatcttgatg ctcagtatga aatggcaaga
     1321 tcacagaccc acacacagcg agggatgggt ttgggtttca catcttcaat gcgtggaatg
     1381 gatacagttt gaaaaatatc aatttgggac tttatagact tgttctgatg tcgggtcctt
     1441 gttcaccaaa cagctagtgt tctagcttgc atgggtgttg cattgacttt aatttattga
     1501 aaaatacgat tttttttgta aatatcagat cagtgatact ggtgttagtg ttgtaatcag
     1561 gttaaaccca cttccattaa acttgacagg actatagaag gacaatattt tttagttcat
     1621 gaattctact tttcaaatat attaaagctt cgggtgggat aaaatctcat acatagattt
     1681 tctcgtgtcc gctgtcttgt gtacttttgt acttaacctt gtacagttat tttcatctct
     1741 tgaaacatga aagaaatgtt atgtagatgt tctttagaag atctggccat ttggtacata
     1801 atcctgcaca caagctgggc agtgataata aaaatggttt tctcaaaact ggtgttaatc
     1861 taa
//
