LOCUS       NM_001108205             953 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus radial spoke head component 9 (Rsph9), mRNA.
ACCESSION   NM_001108205 XM_001066844 XM_006244538 XM_236938
VERSION     NM_001108205.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 953)
  AUTHORS   Dougherty,G.W., Loges,N.T., Klinkenbusch,J.A., Olbrich,H.,
            Pennekamp,P., Menchen,T., Raidt,J., Wallmeier,J., Werner,C.,
            Westermann,C., Ruckert,C., Mirra,V., Hjeij,R., Memari,Y.,
            Durbin,R., Kolb-Kokocinski,A., Praveen,K., Kashef,M.A., Kashef,S.,
            Eghtedari,F., Haffner,K., Valmari,P., Baktai,G., Aviram,M.,
            Bentur,L., Amirav,I., Davis,E.E., Katsanis,N., Brueckner,M.,
            Shaposhnykov,A., Pigino,G., Dworniczak,B. and Omran,H.
  TITLE     DNAH11 Localization in the Proximal Region of Respiratory Cilia
            Defines Distinct Outer Dynein Arm Complexes
  JOURNAL   Am J Respir Cell Mol Biol 55 (2), 213-224 (2016)
   PUBMED   26909801
REFERENCE   2  (bases 1 to 953)
  AUTHORS   Castleman,V.H., Romio,L., Chodhari,R., Hirst,R.A., de Castro,S.C.,
            Parker,K.A., Ybot-Gonzalez,P., Emes,R.D., Wilson,S.W., Wallis,C.,
            Johnson,C.A., Herrera,R.J., Rutman,A., Dixon,M., Shoemark,A.,
            Bush,A., Hogg,C., Gardiner,R.M., Reish,O., Greene,N.D.,
            O'Callaghan,C., Purton,S., Chung,E.M. and Mitchison,H.M.
  TITLE     Mutations in radial spoke head protein genes RSPH9 and RSPH4A cause
            primary ciliary dyskinesia with central-microtubular-pair
            abnormalities
  JOURNAL   Am J Hum Genet 84 (2), 197-209 (2009)
   PUBMED   19200523
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On or before Jun 1, 2021 this sequence version replaced
            XM_006244538.4, NM_001108205.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.513521.1,
                                           SRR22582419.1733747.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-281               JAXUCZ010000009.1  22337681-22337961
            282-447             JAXUCZ010000009.1  22339872-22340037
            448-577             JAXUCZ010000009.1  22344395-22344524
            578-724             JAXUCZ010000009.1  22345351-22345497
            725-953             JAXUCZ010000009.1  22350287-22350515
FEATURES             Location/Qualifiers
     source          1..953
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q12"
     gene            1..953
                     /gene="Rsph9"
                     /gene_synonym="RGD1310693"
                     /note="radial spoke head component 9"
                     /db_xref="GeneID:316238"
                     /db_xref="RGD:1310693"
     exon            1..281
                     /gene="Rsph9"
                     /gene_synonym="RGD1310693"
                     /inference="alignment:Splign:2.1.0"
     CDS             55..885
                     /gene="Rsph9"
                     /gene_synonym="RGD1310693"
                     /note="radial spoke head 9 homolog"
                     /codon_start=1
                     /product="radial spoke head protein 9 homolog"
                     /protein_id="NP_001101675.2"
                     /db_xref="GeneID:316238"
                     /db_xref="RGD:1310693"
                     /translation="MDADSLLLSLELASGSGQGLSPDRRASLLTSLMLVKRDYRFARV
                     LFWGRILGLVADYYIAQGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVTQTSVVSGR
                     FMGDPSHEYEHTELQKVSEGDKVFDEEVVVQIKEETRLVSIIDQIDKAVAIVPRGALF
                     KTPFGVTHVNRTFEGLPLSEIKKLSSYFHFREAIDLKNKTLLEKADLEPSLDFLDSLE
                     YDIPRGSWSIQMERGNALVVLRSLLWPGLTFYHAPRSKNYGYIYVGTGEKNMDLPFML
                     "
     exon            282..447
                     /gene="Rsph9"
                     /gene_synonym="RGD1310693"
                     /inference="alignment:Splign:2.1.0"
     exon            448..577
                     /gene="Rsph9"
                     /gene_synonym="RGD1310693"
                     /inference="alignment:Splign:2.1.0"
     exon            578..724
                     /gene="Rsph9"
                     /gene_synonym="RGD1310693"
                     /inference="alignment:Splign:2.1.0"
     exon            725..953
                     /gene="Rsph9"
                     /gene_synonym="RGD1310693"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccatggagac ggcttctacc cgccagacca gcttggaggg gaacggctgg actgatggac
       61 gcggacagcc tcttgttgtc gctggagctg gcatctggca gtgggcaggg tctcagcccg
      121 gaccgtcggg cctcgctgct cacgtccctt atgctggtta aacgggatta ccgcttcgcg
      181 cgggtcctct tctggggccg catcctcggc cttgtcgcag attactacat cgcacagggc
      241 ctgagtgagg accagctcgc accacgcaag acgctctaca gcctgaactg cacagagtgg
      301 agcctcttgc ccccggccac agaggagatg gtgacacaga catctgtggt gagtggccgc
      361 ttcatgggtg atccttcaca cgagtatgaa cacaccgagc tccagaaggt cagcgaaggt
      421 gacaaggtct ttgatgaaga agtggtggtc caaatcaagg aggagactcg cttggtgtcc
      481 atcatcgacc agattgacaa ggctgtggcc atcgtccctc gaggtgccct cttcaagacc
      541 ccttttggag tcacccacgt caatcggacc tttgaaggcc tgcccttgtc tgagatcaag
      601 aagcttagct cgtacttcca cttcagggag gccattgacc tgaagaacaa gaccttgctt
      661 gagaaggcag acttggagcc ctcactggat ttcctggact ccctggagta tgatatcccc
      721 agaggctctt ggagcatcca gatggaaagg ggcaacgcgc tggtggtact gcgcagcctg
      781 ctctggccag gcctcacctt ctaccacgct ccccgctcca agaactacgg ctacatctat
      841 gtgggcacag gcgagaagaa catggacctg cccttcatgc tgtaggaggg gcaggctgga
      901 tatttatgag aagtcgaaac actgtttcat aaagttcaac cattgggtct gct
//
