LOCUS       NM_001415788            2354 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus radial spoke head 6 homolog A (Rsph6a),
            transcript variant 1, mRNA.
ACCESSION   NM_001415788 XM_008758909
VERSION     NM_001415788.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2354)
  AUTHORS   Paudel,B., Gervasi,M.G., Porambo,J., Caraballo,D.A., Tourzani,D.A.,
            Mager,J., Platt,M.D., Salicioni,A.M. and Visconti,P.E.
  TITLE     Sperm capacitation is associated with phosphorylation of the
            testis-specific radial spoke protein Rsph6adagger
  JOURNAL   Biol Reprod 100 (2), 440-454 (2019)
   PUBMED   30239614
REFERENCE   2  (bases 1 to 2354)
  AUTHORS   Abbasi,F., Miyata,H., Shimada,K., Morohoshi,A., Nozawa,K.,
            Matsumura,T., Xu,Z., Pratiwi,P. and Ikawa,M.
  TITLE     RSPH6A is required for sperm flagellum formation and male fertility
            in mice
  JOURNAL   J Cell Sci 131 (19) (2018)
   PUBMED   30185526
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Dec 30, 2022 this sequence version replaced XM_008758909.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.1678.1,
                                           SRR26360181.2455828.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-694               JAXUCZ010000001.1  87828844-87829537
            695-926             JAXUCZ010000001.1  87831311-87831542
            927-1691            JAXUCZ010000001.1  87839529-87840293
            1692-1836           JAXUCZ010000001.1  87842014-87842158
            1837-1954           JAXUCZ010000001.1  87842891-87843008
            1955-2354           JAXUCZ010000001.1  87848084-87848483
FEATURES             Location/Qualifiers
     source          1..2354
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..2354
                     /gene="Rsph6a"
                     /gene_synonym="Dmwd; Hn1-ps1; Rshl1"
                     /note="radial spoke head 6 homolog A"
                     /db_xref="GeneID:292684"
                     /db_xref="RGD:1306786"
     exon            1..694
                     /gene="Rsph6a"
                     /gene_synonym="Dmwd; Hn1-ps1; Rshl1"
                     /inference="alignment:Splign:2.1.0"
     CDS             75..2192
                     /gene="Rsph6a"
                     /gene_synonym="Dmwd; Hn1-ps1; Rshl1"
                     /note="isoform 1 is encoded by transcript variant 1;
                     dystrophia myotonica-containing WD repeat motif; radial
                     spoke head-like protein 1; hematological and neurological
                     expressed 1 (Hn1-ps1) pseudogene; radial spokehead-like 1;
                     radial spoke head protein 6 homolog A"
                     /codon_start=1
                     /product="radial spoke head protein 6 homolog A isoform 1"
                     /protein_id="NP_001402717.1"
                     /db_xref="GeneID:292684"
                     /db_xref="RGD:1306786"
                     /translation="MGDPPPNPDPSQTRRASQNSERARSREYSQPLLSIPEDGVQRPQ
                     QRGSRISQGSQDLQATGLPQWPQRPSLPPDIQDEEGTDLDVTLGYPSGLPMEFSQQHY
                     LDDSGMLQQFPEGQSLLEQLESNYQDSASGVLDQFNLYSREDDTFSQATQHGPYMRDD
                     PTLHLGPSDLGFMPFVGEVPDPEPRELAVQNAKAYLLQTSVSCNLSLYEHLVNLLTKI
                     LNQRPEDPLSILESLNRTTQWEWFHPKLDTLRDDPEMQPTYEMAEKQKALFIRGGGEG
                     EQEMEEEVTDSPVPNIMETAFYFEQAGVGLSSDESFRIFLALRQLVEQQPIHSCRFWG
                     KILGLSRSYLVAEVEFREGEEEGEEEEVEEMMEGGEVLETHGEEEGEEDEEKVVDAVP
                     KPQWKPPPVIPKEESRSGANKYLYFVCNEPGRPWTRLPHVTPAQIVCARKIKKFFTGF
                     LDTPVISYPPFPGNEANYLRAQIARISAATHISPLGFYQFGEEEGDEEEEGGAGRDSF
                     EENPDFEGIPVLELVDSMANWVHHTQHILPQGRCTWVNPMQKTEEEEELGEEEEKADE
                     GMEEVEQEVGPPLLTPLSEDAEIMHLSPWTTRLSCSLSPQYSVAVVRSNLWPGAYAYA
                     TGKKFENLYIGWGHKYSPENFNPMLPALIQQEYPSGPEIMEMSDPTVEEEQALKAAQE
                     QALAAAEEEEEDDEEDEDEDLED"
     exon            695..926
                     /gene="Rsph6a"
                     /gene_synonym="Dmwd; Hn1-ps1; Rshl1"
                     /inference="alignment:Splign:2.1.0"
     exon            927..1691
                     /gene="Rsph6a"
                     /gene_synonym="Dmwd; Hn1-ps1; Rshl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1692..1836
                     /gene="Rsph6a"
                     /gene_synonym="Dmwd; Hn1-ps1; Rshl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1837..1954
                     /gene="Rsph6a"
                     /gene_synonym="Dmwd; Hn1-ps1; Rshl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1955..2354
                     /gene="Rsph6a"
                     /gene_synonym="Dmwd; Hn1-ps1; Rshl1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aacggcaggc agggtccagg ctagggcagc acttgctagc cttcctcctg caggcccaca
       61 cacttttctg aggcatgggg gatccaccgc ccaaccctga cccctcccaa acccggaggg
      121 cttcccaaaa ctcagaaagg gcacggagtc gtgagtactc gcagcctctg ttgtccatcc
      181 cggaggatgg ggtgcagcga ccgcagcagc ggggcagtcg gatcagtcag ggcagtcagg
      241 acctgcaggc aactggcctg cctcagtggc cacagaggcc cagcctgccc ccggatattc
      301 aggatgagga aggcaccgac ttagacgtga ccttaggcta cccgtcaggc cttcccatgg
      361 agttctcaca acagcattac ctggatgata gcgggatgtt gcagcagttc ccggagggcc
      421 agagcctctt agaacaactg gagtctaact accaagactc ggcctccgga gtcctggacc
      481 aattcaacct ctactcaaga gaggatgaca cattcagcca ggccacacag catggaccct
      541 acatgagaga tgaccccacc ctccacttag ggccctctga tctgggcttc atgccctttg
      601 ttggagaggt gcctgacccc gagcctcgtg agctggcagt acagaacgcc aaggcctacc
      661 tgctgcagac cagcgtgagc tgcaacctca gcctgtatga gcacctggtg aacctgctga
      721 ccaagatcct gaaccagcgg cccgaggacc ccttgtccat cctggagtct ctgaaccgca
      781 ccacgcagtg ggaatggttc caccccaagc tggacacgct gcgggacgac cccgagatgc
      841 agcccaccta cgagatggcc gaaaagcaaa aggctctgtt tatcaggggt ggaggagaag
      901 gtgaacagga aatggaagag gaggtgactg acagccccgt gcccaacatc atggagacag
      961 ctttctactt cgagcaggcg ggggtggggc tgagctcgga tgaaagcttc cgaatcttcc
     1021 tggccctgag gcagctggtg gagcagcagc ccatccactc atgccgcttc tggggcaaga
     1081 tcctgggcct gagccgcagc tacctggtgg ccgaggtgga gttccgcgag ggcgaggagg
     1141 agggagagga ggaggaggtg gaggagatga tggagggagg cgaggtcttg gagacgcacg
     1201 gtgaggagga gggcgaggag gatgaggaga aggtagtgga cgccgtgccc aagccgcagt
     1261 ggaagccgcc gccagtcatc cccaaggagg agagccgcag cggcgccaac aaatacctgt
     1321 acttcgtgtg caacgagccg ggccgtccgt ggacgcgcct gccgcacgtg acgcccgcgc
     1381 agatcgtgtg cgcgcgcaag atcaaaaagt tcttcaccgg cttcctggac actccggtca
     1441 tcagctaccc gcccttcccc ggcaacgagg ccaactatct gcgcgcacaa attgcgcgca
     1501 tctccgccgc cacgcacatc agcccgctgg gcttctacca gttcggcgag gaggagggcg
     1561 atgaagagga ggagggcggc gcggggcgcg actcgttcga ggagaaccct gactttgagg
     1621 gcatccccgt gttggagctc gtggactcca tggccaactg ggtacatcac acgcagcaca
     1681 tcctgcctca ggggcgctgt acatgggtga acccaatgca gaagacagag gaggaagagg
     1741 agctggggga ggaggaagag aaggcggacg aggggatgga ggaggtagag caggaggttg
     1801 gtcctccgct tctgacccct ctctcagaag acgcagaaat catgcacctg tctccctgga
     1861 ccacccgcct ctcctgcagc ctcagccctc agtactcggt ggccgtcgtg cgttccaacc
     1921 tctggccagg ggcctatgcc tacgccactg gcaagaagtt tgagaacctg tacattggct
     1981 ggggtcacaa gtatagcccc gagaacttca atccaatgct gccagctctg attcagcagg
     2041 agtaccccag tggccccgaa atcatggaga tgagcgaccc cacagtagag gaggagcagg
     2101 ccctgaaggc tgctcaggag caggccctgg cagccgctga ggaagaggag gaggatgatg
     2161 aagaggatga ggatgaggac ctggaggact gaggtcccca aggccctccc catagccttc
     2221 ccccttattt gtagaacaga ctgtattttt cctattggtt ttgttccctg gccttgcacg
     2281 acacaggtag aaatccaccc agtgctctaa ataaaactcc cacagcacag ccgcttagcc
     2341 acacattcac tcag
//
