LOCUS       NM_001401509            1219 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus radial spoke head 14 homolog (Rsph14), transcript
            variant 2, mRNA.
ACCESSION   NM_001401509 XM_006256341
VERSION     NM_001401509.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1219)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Feb 15, 2022 this sequence version replaced XM_006256341.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.82101.1,
                                           SRR26360176.1977999.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-84                JAXUCZ010000020.1  13626924-13627007
            85-332              JAXUCZ010000020.1  13628384-13628631
            333-435             JAXUCZ010000020.1  13629538-13629640
            436-554             JAXUCZ010000020.1  13634587-13634705
            555-780             JAXUCZ010000020.1  13698967-13699192
            781-917             JAXUCZ010000020.1  13701032-13701168
            918-1219            JAXUCZ010000020.1  13702516-13702817
FEATURES             Location/Qualifiers
     source          1..1219
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..1219
                     /gene="Rsph14"
                     /gene_synonym="Rtdr1"
                     /note="radial spoke head 14 homolog"
                     /db_xref="GeneID:365552"
                     /db_xref="RGD:1305601"
     exon            1..84
                     /gene="Rsph14"
                     /gene_synonym="Rtdr1"
                     /inference="alignment:Splign:2.1.0"
     exon            85..332
                     /gene="Rsph14"
                     /gene_synonym="Rtdr1"
                     /inference="alignment:Splign:2.1.0"
     CDS             134..1159
                     /gene="Rsph14"
                     /gene_synonym="Rtdr1"
                     /note="isoform 2 is encoded by transcript variant 2;
                     rhabdoid tumor deletion region protein 1; rhabdoid tumor
                     deletion region gene 1"
                     /codon_start=1
                     /product="radial spoke head 14 homolog isoform 2"
                     /protein_id="NP_001388438.1"
                     /db_xref="GeneID:365552"
                     /db_xref="RGD:1305601"
                     /translation="MAHARISMYMPPDIDPTKAAIAYGCRALRKLNEELQSEDLLTRQ
                     KAVMALCDLMHDPEYVYEAINIGCLESLKALLKDDDNLVRIKTTEVLYIMATHNVGRV
                     GFLKHDIILALSRLLSDHQTLCRENLHQAYKHLAQLPEGAQGIVTSGLISFLVRKLQK
                     EELHIQEIILDTLALCLQEDATEALNSQAVPCFKEKLFSGNPQIRSKAARALIAISIP
                     LDGKRQVWQNEVIPILVDLLSDTDEEVKANAAGALMHATVTTEGKYAALDANAIDPLL
                     ELLCSIPTTKVCLNATKALTMLAEAPEGRKLLLPRVPTFRYLLTHKNEAIRRAAEVAI
                     KVIEWKP"
     exon            333..435
                     /gene="Rsph14"
                     /gene_synonym="Rtdr1"
                     /inference="alignment:Splign:2.1.0"
     exon            436..554
                     /gene="Rsph14"
                     /gene_synonym="Rtdr1"
                     /inference="alignment:Splign:2.1.0"
     exon            555..780
                     /gene="Rsph14"
                     /gene_synonym="Rtdr1"
                     /inference="alignment:Splign:2.1.0"
     exon            781..917
                     /gene="Rsph14"
                     /gene_synonym="Rtdr1"
                     /inference="alignment:Splign:2.1.0"
     exon            918..1219
                     /gene="Rsph14"
                     /gene_synonym="Rtdr1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcgcctggt aataggcgga gtgatctggc tggcagacac cagaagactt cacttactaa
       61 agacaagcga ggcagctgca gctgcagctt ctataaagtt tcatcttcaa agcccgttgg
      121 caggcgtgga aagatggctc atgcccggat ctccatgtac atgcctcctg acattgaccc
      181 cacgaaagct gccatcgctt acggctgtcg ggccttgcgc aagcttaatg aggagctaca
      241 atcggaggat ctcctgacca ggcagaaagc cgtgatggct ctgtgtgacc tcatgcacga
      301 ccctgagtat gtctacgagg ccatcaacat aggctgcctg gagagcctga aggccctgtt
      361 gaaggatgat gataacttgg ttcggataaa gaccaccgag gtgctgtaca tcatggccac
      421 ccataacgta ggcagagttg gcttcttaaa gcacgacatc atcctagccc tgtcaagact
      481 gctgagtgat caccagaccc tctgccggga gaacttacac caggcataca agcacctggc
      541 acagctgcct gaaggtgccc agggtatcgt cacgagtggc ttgatctcct ttctggtacg
      601 gaagctgcag aaggaagagt tacacatcca ggagatcatc ctggacaccc tggcactgtg
      661 cttgcaggag gatgccaccg aggctctaaa cagccaagcc gtgccttgtt ttaaggagaa
      721 gctcttcagc ggaaatcccc aaatccgcag taaagccgct cgggcactca ttgccatcag
      781 catcccgttg gatggcaaga ggcaggtgtg gcagaacgaa gtcattccca tcctggtgga
      841 cctgttgtcc gacaccgacg aagaggttaa ggctaacgct gctggagctc tgatgcacgc
      901 aaccgtgacc accgaaggaa aatacgcagc cctggatgct aatgccatcg atccactcct
      961 ggagttgctg tgctccatcc ccacgaccaa ggtgtgtctg aacgccacaa aagccctcac
     1021 catgctggct gaagcccccg agggccgtaa gttactgctg ccccgtgtgc ccaccttccg
     1081 ttacctcctg acgcataaaa atgaggccat acggcgagca gccgaagtcg ccatcaaagt
     1141 gattgagtgg aagccgtgac tcccgtttcg gccagacccg ataggctaac tctgtccctg
     1201 aataaacgag ttgactctc
//
