LOCUS       NM_001329198            1951 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus ribosomal L1 domain containing 1 (Rsl1d1), mRNA.
ACCESSION   NM_001329198 NM_001329199 XM_008767502
VERSION     NM_001329198.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1951)
  AUTHORS   Guo,Z., Neilson,L.J., Zhong,H., Murray,P.S., Zanivan,S. and
            Zaidel-Bar,R.
  TITLE     E-cadherin interactome complexity and robustness resolved by
            quantitative proteomics
  JOURNAL   Sci Signal 7 (354), rs7 (2014)
   PUBMED   25468996
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1951)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 1951)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 1951)
  AUTHORS   Tsai,W.C., Chang,H.N., Yu,T.Y., Chien,C.H., Fu,L.F., Liang,F.C. and
            Pang,J.H.
  TITLE     Decreased proliferation of aging tenocytes is associated with
            down-regulation of cellular senescence-inhibited gene and
            up-regulation of p27
  JOURNAL   J Orthop Res 29 (10), 1598-1603 (2011)
   PUBMED   21452304
  REMARK    GeneRIF: The proliferation of tenocytes declines with age and is
            associated with the down-regulation of CSIG.
REFERENCE   5  (bases 1 to 1951)
  AUTHORS   Ma,L., Chang,N., Guo,S., Li,Q., Zhang,Z., Wang,W. and Tong,T.
  TITLE     CSIG inhibits PTEN translation in replicative senescence
  JOURNAL   Mol Cell Biol 28 (20), 6290-6301 (2008)
   PUBMED   18678645
REFERENCE   6  (bases 1 to 1951)
  AUTHORS   Meng,L., Yasumoto,H. and Tsai,R.Y.
  TITLE     Multiple controls regulate nucleostemin partitioning between
            nucleolus and nucleoplasm
  JOURNAL   J Cell Sci 119 (Pt 24), 5124-5136 (2006)
   PUBMED   17158916
REFERENCE   7  (bases 1 to 1951)
  AUTHORS   Takagi,M., Absalon,M.J., McLure,K.G. and Kastan,M.B.
  TITLE     Regulation of p53 translation and induction after DNA damage by
            ribosomal protein L26 and nucleolin
  JOURNAL   Cell 123 (1), 49-63 (2005)
   PUBMED   16213212
  REMARK    Erratum:[Cell. 2005 Nov 4;123(3):536-7]
REFERENCE   8  (bases 1 to 1951)
  AUTHORS   Foster,L.J., Zeemann,P.A., Li,C., Mann,M., Jensen,O.N. and
            Kassem,M.
  TITLE     Differential expression profiling of membrane proteins by
            quantitative proteomics in a human mesenchymal stem cell line
            undergoing osteoblast differentiation
  JOURNAL   Stem Cells 23 (9), 1367-1377 (2005)
   PUBMED   16210410
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Feb 25, 2022 this sequence version replaced NM_001329199.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643291.26858.1,
                                           SRR26643297.32931.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-156               JAXUCZ010000010.1  4931839-4931994
            157-293             JAXUCZ010000010.1  4932703-4932839
            294-429             JAXUCZ010000010.1  4933590-4933725
            430-578             JAXUCZ010000010.1  4935577-4935725
            579-680             JAXUCZ010000010.1  4935809-4935910
            681-774             JAXUCZ010000010.1  4938142-4938235
            775-897             JAXUCZ010000010.1  4938316-4938438
            898-1152            JAXUCZ010000010.1  4941781-4942035
            1153-1951           JAXUCZ010000010.1  4942928-4943726
FEATURES             Location/Qualifiers
     source          1..1951
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q11"
     gene            1..1951
                     /gene="Rsl1d1"
                     /gene_synonym="Ac1158; Csig; Rsl1d1l1"
                     /note="ribosomal L1 domain containing 1"
                     /db_xref="GeneID:302898"
                     /db_xref="RGD:1359295"
     exon            1..156
                     /gene="Rsl1d1"
                     /gene_synonym="Ac1158; Csig; Rsl1d1l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             52..1413
                     /gene="Rsl1d1"
                     /gene_synonym="Ac1158; Csig; Rsl1d1l1"
                     /note="cellular senescence inhibited; ribosomal L1 domain
                     containing 1-like 1"
                     /codon_start=1
                     /product="ribosomal L1 domain-containing protein 1"
                     /protein_id="NP_001316127.1"
                     /db_xref="GeneID:302898"
                     /db_xref="RGD:1359295"
                     /translation="MKCLASESPDASAATATTTEVQAEPTALEQLDREQIRKAVEVLF
                     DNSKSRKNNELLLNGSENLFLMVILWKIPKKELRIRVSLPHSILSESSEVCLFTKDEC
                     DSPEQTEGFYKKLLKKHGVNTISQIIPFKTLKTEYKAYEAKLRLLGSFDVFIADERIR
                     RHLPTHIGRHFYQRKKVPVSVNLLAKNLSKEINRTITGTVLNISKRGSCSTIRIGHTG
                     MEIQHIIENILTVSEMLSEKLPEKWQSVKLLFLKTEKSVSLPIFSSFVTSQDENSASF
                     RGLKKQEPKKRRKHEKQKLKKESKMLKKKSKKATSLLTQGGLVSSAPAKGPGAQKKRT
                     SKASTQPKVTEEYEETIPQLVPIGETPDKENMKMQENITGKKSPKSKSDPRTPQGKKR
                     KALPATETPEASDPGISGKKQKKDVREFRKPGAKSFSTPMKSGKKASNTPRDKKTQAA
                     HSN"
     exon            157..293
                     /gene="Rsl1d1"
                     /gene_synonym="Ac1158; Csig; Rsl1d1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            294..429
                     /gene="Rsl1d1"
                     /gene_synonym="Ac1158; Csig; Rsl1d1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            430..578
                     /gene="Rsl1d1"
                     /gene_synonym="Ac1158; Csig; Rsl1d1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            579..680
                     /gene="Rsl1d1"
                     /gene_synonym="Ac1158; Csig; Rsl1d1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            681..774
                     /gene="Rsl1d1"
                     /gene_synonym="Ac1158; Csig; Rsl1d1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            775..897
                     /gene="Rsl1d1"
                     /gene_synonym="Ac1158; Csig; Rsl1d1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            898..1152
                     /gene="Rsl1d1"
                     /gene_synonym="Ac1158; Csig; Rsl1d1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1153..1951
                     /gene="Rsl1d1"
                     /gene_synonym="Ac1158; Csig; Rsl1d1l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggggcttcgc gtgcgcaggc attctgactc ctgaattcca cacgaggcgg catgaagtgc
       61 ttagcgtccg agtctcccga tgcctcggcc gctacggcga ccaccaccga ggtgcaagcg
      121 gaaccgaccg ctcttgaaca gctggacaga gagcagataa gaaaggcagt agaagttctg
      181 tttgataact ccaagtccag aaaaaataat gaattgctgt tgaatgggag tgaaaatctg
      241 tttttaatgg tgatactatg gaaaattcca aagaaagaac ttaggatcag agtgtctttg
      301 cctcatagca tcctctcaga atcctcagaa gtctgtctgt ttaccaaaga tgaatgtgat
      361 tcacctgaac agacagaggg tttctataaa aagcttttga aaaagcatgg agtaaacact
      421 atctctcaga ttatcccctt taagacgtta aaaacagaat ataaagccta tgaagccaag
      481 ctccgcctcc tgggtagctt tgatgtcttt attgctgatg aacgaatccg acggcatttg
      541 cccacacaca taggaaggca tttctatcag aggaagaaag ttccagtatc tgtaaacctt
      601 ctggcaaaga atctgtccaa agagattaac cgaactatca cagggaccgt cttaaacatc
      661 tctaagcgtg gttcttgcag tactatccgt attggtcaca ctggaatgga gattcagcac
      721 atcattgaaa acatcctgac tgtctcagaa atgctttcag aaaaattgcc agagaaatgg
      781 cagagtgtga aactcctatt cctgaaaact gagaagtcgg tttcccttcc tatcttttcc
      841 tcgtttgtca catctcagga cgaaaacagc gcttccttcc gtggtctgaa gaaacaggaa
      901 ccaaagaaaa gaaggaagca tgaaaaacaa aagttgaaga aggaaagcaa aatgttaaag
      961 aagaaatcca agaaggctac atctctttta actcaaggtg gcttagttag cagtgctcca
     1021 gcaaagggcc cgggagccca gaagaaaagg accagcaagg ccagcacaca gccgaaagtt
     1081 acagaggagt atgaagaaac aattccccaa ctggtaccaa taggagaaac tccggataaa
     1141 gaaaatatga agatgcaaga aaatatcaca gggaagaagt ctccaaaatc gaagtctgat
     1201 ccaagaaccc ctcagggtaa aaaaaggaag gccttaccgg ctacagagac tccagaagcc
     1261 tcagatcctg ggatctcagg gaagaaacaa aaaaaggatg tgcgggaatt cagaaagcca
     1321 ggggccaagt ccttctctac tcccatgaaa tctggaaaga aagcttccaa cactcccaga
     1381 gacaaaaaaa cccaggctgc ccactcaaac tagaattagt gcatttggca taaaagacat
     1441 cagagttaac aagagctttt caagaatatt tagacagggc gtgctggcgt ttgtgtgtgt
     1501 gcccacgcac gcacgcacgc acgcacgcac ggtggaatgc agagataggc agatgtgtat
     1561 gagtttgagg acaacctagt tgtctacaaa ggggtcacca agattcattc tttaaagggc
     1621 agatttaagt cctgggcttg gtggtataac acttttgaca gcaaatgcaa gatcctggcc
     1681 ttactaccta gagctgtcaa aggaaaaaag ataaacccca cacaagaaaa ggtactctgc
     1741 tgtttattcc atcacagcgt ttttcaacaa ggagtccagg acttaaatgg tttttgagaa
     1801 gtttctgtgg gtgcctctga aataaatatt tttgttgtaa aaaccagggg tttcaggcac
     1861 aatcttttta aattgttcag tgtatttcct gatgcttctg tacatttgct ttttttgaaa
     1921 ttaaacttac atcccttctg ggtagacgca c
//
