LOCUS       NM_001135872            3392 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus round spermatid basic protein 1-like (Rsbn1l),
            mRNA.
ACCESSION   NM_001135872 XM_231305
VERSION     NM_001135872.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3392)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Oct 16, 2008 this sequence version replaced XM_231305.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643292.16404.1,
                                           SRR26643293.21476.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-996               JAXUCZ010000004.1  15031173-15032168
            997-1113            JAXUCZ010000004.1  15052630-15052746
            1114-1751           JAXUCZ010000004.1  15059185-15059822
            1752-1889           JAXUCZ010000004.1  15077066-15077203
            1890-2032           JAXUCZ010000004.1  15080732-15080874
            2033-2200           JAXUCZ010000004.1  15086969-15087136
            2201-2309           JAXUCZ010000004.1  15092016-15092124
            2310-3392           JAXUCZ010000004.1  15092204-15093286
FEATURES             Location/Qualifiers
     source          1..3392
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q11"
     gene            1..3392
                     /gene="Rsbn1l"
                     /gene_synonym="RGD1308748"
                     /note="round spermatid basic protein 1-like"
                     /db_xref="GeneID:311987"
                     /db_xref="RGD:1308748"
     exon            1..996
                     /gene="Rsbn1l"
                     /gene_synonym="RGD1308748"
                     /inference="alignment:Splign:2.1.0"
     CDS             453..2927
                     /gene="Rsbn1l"
                     /gene_synonym="RGD1308748"
                     /note="round spermatid basic protein 1-like protein"
                     /codon_start=1
                     /product="lysine-specific demethylase RSBN1L"
                     /protein_id="NP_001129344.1"
                     /db_xref="GeneID:311987"
                     /db_xref="RGD:1308748"
                     /translation="MAEPPNPARGPVAVLSEKEAFGKLQPSSRESPGSMSAKKVRTEE
                     KKGPRRVNGEGDSGGNGGQLQPPAAPSPQSYGSPAAWSFAARPAASSQATPRGCYAFS
                     ASPSVSSASASSSQPVPRKLLVASSLLHAQPHRVLLPPVTPPAAAKPRRPKEKREKEK
                     RRHGLGGADRDENGEAKPLPRDKIKDKIKEKDKEKERERKKHKVMSEIKKENGDVKIF
                     LKSGKEKPKTNIEDLQIKKVKKKKKKKHKENEKRKRPKMYSKSIQTICSGLLSAEDQE
                     AKGILNDNVKDCIGKHLDTKNCDSKVPDNSDFPFVSLKEPRVQNDLKRLDTLEFKQLI
                     HVEHQPNGGASVIHAYCSELSCLSPVEMRRFAEEFVGLAFSENESSAAFYVMGVVHGA
                     ATYLPDFLDYFSYNFPNSPVKMEILGKKDIETTTMSNFHAQVKRTYSHGTYRAGPMRQ
                     ISLVGAVDEEVGDYFPEFLDMLEESPFLKCTLPWGTLSSLKLESRKDSDDGPIMWVRP
                     GEQMIPVADMPKSPFKRKRTTNEIKNLQYLPRTSEPREMLFEDRTRAHADHIGQGFER
                     QTTAAVGVLKAVHCGQRPDQPRVTKDVICFHAEDFLEVVQRMQLDLHEPPLSQCVQWV
                     DDAKLNQLRREGIRYARIQLYDNDIYFIPRNVVHQFKTVSAVCSLAWHVRLKLYHAED
                     TCHSTVTHEQGIPSGPTSSVLGTHTENQSSSDPVLSDRLHSKYESPQVKQEPVVSLNI
                     KEEPVTVTVSAKTRTPNNTEGKSSKAKSDHVQFSDFHIDMDSKFENTNKDLKEDLCPG
                     SVQEVDTRQHSCIPSNQDRSDENNVC"
     exon            997..1113
                     /gene="Rsbn1l"
                     /gene_synonym="RGD1308748"
                     /inference="alignment:Splign:2.1.0"
     exon            1114..1751
                     /gene="Rsbn1l"
                     /gene_synonym="RGD1308748"
                     /inference="alignment:Splign:2.1.0"
     exon            1752..1889
                     /gene="Rsbn1l"
                     /gene_synonym="RGD1308748"
                     /inference="alignment:Splign:2.1.0"
     exon            1890..2032
                     /gene="Rsbn1l"
                     /gene_synonym="RGD1308748"
                     /inference="alignment:Splign:2.1.0"
     exon            2033..2200
                     /gene="Rsbn1l"
                     /gene_synonym="RGD1308748"
                     /inference="alignment:Splign:2.1.0"
     exon            2201..2309
                     /gene="Rsbn1l"
                     /gene_synonym="RGD1308748"
                     /inference="alignment:Splign:2.1.0"
     exon            2310..3392
                     /gene="Rsbn1l"
                     /gene_synonym="RGD1308748"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcaactttg caccatttca gtctttgctg atcggactct ccacaaattt cctcccattt
       61 tgagcaacgc cagaacccgc ttttcagaac gtgaagaggc aagaagggac ccaagccacc
      121 tcaaggtaaa aagagagggc ggtacaaaca aggcaaagtc tttgagagaa cagcagcgct
      181 acctcggtcc tcgcagattg ggggctgccg agcgactgtc agaagaccct cctcggtaac
      241 ccctccgtcg gccgctccga aagacctctg acctccaaag aaggtccgct ccgtgatccc
      301 acccccgacg gcttctgtcc gcatctttga ttggtttgtt taaggatccc tcagtttagt
      361 gcgcccaatg ggagctcggc ctggacctag ggaccccgcc ccatgccccc gctccgggga
      421 gcggcggaga gtaaatacaa caggagcgca aaatggcgga accgccgaac ccagcccgtg
      481 gccccgtggc tgtcctctct gagaaggagg catttggcaa actacagcct tcctcgcggg
      541 agtcaccggg ttctatgtcc gccaagaagg ttcgtacgga ggagaagaag gggccgcgga
      601 gagtgaacgg ggagggggac agcggcggga acggcgggca gctgcagccg cccgccgccc
      661 cgtcgccaca gagctacggc agcccggcgg cgtggagctt cgcggctcgg cccgccgcct
      721 cctcccaggc cacccctcgg ggctgttacg ccttctccgc tagcccgagc gtctcctcag
      781 cctccgcttc ctcgtctcag ccggtgccgc gcaaactgct ggtggcttcc tcgctgctgc
      841 acgctcagcc tcaccgcgtc ctgctcccgc ccgtcactcc gccggccgcc gccaagccgc
      901 gcagacccaa ggagaagcgc gagaaggaga agcggaggca cggcctcggc ggcgccgacc
      961 gggatgagaa cggcgaggcg aagccgctgc cgcgagataa aatcaaagac aaaattaaag
     1021 agaaagacaa agaaaaggag agagagagaa agaagcataa agtaatgagt gagatcaaga
     1081 aagaaaatgg agatgtaaag attttcctga aaagtgggaa ggagaagcca aaaacaaaca
     1141 tagaagactt acaaattaaa aaagtaaaga agaaaaagaa aaagaaacac aaagagaatg
     1201 aaaaacggaa gcgtccaaaa atgtatagca aatctattca gaccatctgc tcaggattgc
     1261 tgtctgctga agatcaagaa gccaaaggca tcttaaacga caatgtaaag gattgcattg
     1321 gaaaacactt ggataccaaa aactgtgact caaaggttcc tgataacagt gactttccct
     1381 ttgtctcatt aaaggagcca cgcgttcaga atgacctgaa aaggttggat actctggagt
     1441 tcaagcagct cattcacgtt gaacaccagc ccaatggagg tgcgtccgtc atccacgcct
     1501 actgtagcga gctctcctgc ctgtctcccg tggagatgcg gaggtttgcg gaagaatttg
     1561 tgggtctggc gttcagtgag aatgagagct ctgcagcttt ctacgtgatg ggcgttgttc
     1621 acggggcagc tacatactta cctgacttcc tagactactt ctcatacaac ttccccaact
     1681 cgccagtcaa gatggagatc ctggggaaga aagatataga gacaacaact atgtccaatt
     1741 ttcatgctca ggtaaaaaga acatactctc acggtactta cagagctggc ccgatgcggc
     1801 agataagttt ggtgggagcg gttgacgagg aagtgggaga ttacttcccc gagttcctgg
     1861 acatgttaga ggagtcaccc tttttaaagt gtacattgcc atggggaaca ctatctagtc
     1921 taaaattaga gagtcggaaa gatagtgatg atggtcccat catgtgggtg cgtccaggag
     1981 aacaaatgat ccctgtggct gatatgccaa agtcaccctt caaaaggaaa agaactacca
     2041 atgaaataaa aaaccttcag tatctacctc gaaccagcga gcctcgggag atgctgtttg
     2101 aagacaggac gagagcccat gcggatcaca taggccaagg ctttgaacga cagaccaccg
     2161 cagctgttgg cgtgctgaag gctgtgcact gtggacagcg gcctgatcaa ccccgagtaa
     2221 ccaaagatgt catttgtttt cacgcagaag atttcttaga agtagttcaa cgaatgcaat
     2281 tagatttaca cgaacctcca ctgtcccagt gtgtacagtg ggttgacgat gcaaaactta
     2341 atcagctgag gagagaaggc attcgctatg ccaggattca gctatatgat aatgacattt
     2401 attttattcc acggaatgtt gtccatcaat tcaagacagt ttcggctgta tgcagtttgg
     2461 catggcacgt tcgacttaaa ttatatcacg cagaggacac ttgtcacagt acagtcactc
     2521 acgaacaagg cataccatca ggtcccacat catcagttct tggaactcac acggagaacc
     2581 aaagctcctc agaccctgtg ttgtcagaca gacttcattc taagtatgaa tccccacaag
     2641 ttaaacagga acctgttgtg tctctaaaca tcaaggaaga acccgtgacg gttactgtat
     2701 ctgcaaagac tagaacacca aataacacag aaggcaagag cagtaaggca aagtcagatc
     2761 atgttcagtt ttcagatttt cacattgaca tggattctaa atttgagaac accaacaaag
     2821 acttaaagga agacttgtgt cctggaagtg ttcaggaagt cgatacacgg caacatagtt
     2881 gtataccttc aaaccaggac agaagtgatg agaacaatgt gtgctaaact tggacattgc
     2941 atatgacctt tctttaaaaa taatttgtaa tgattcatga aatctgaaag caagcctagg
     3001 aaatgctctc aagtctgtta caaaatatag tttatgtagc tttgtaacat tcctcagtgc
     3061 ctgtccatac ccgggaagta taacgagtgc acttagggcc agatgcactg taaacactgc
     3121 agggttaaat acgcaggagt ctttaggaaa gtcatttgaa ttggagtttt aggttttaga
     3181 atagagctga caaaaatcat ataaatatat tttttgtaat atgagccaga attcttcttt
     3241 tgacaattta aggttttttc catagagctt atttatacca actttttttc cttttaaacg
     3301 tgtcagcact gtagtgtaaa tagctctaca aaaccttctt agtgcgattt atattgagat
     3361 gtgagccact taataaaggt tcataatact aa
//
