LOCUS       NM_001108778            1550 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus ribosomal RNA processing 9, U3 small nucleolar
            RNA binding protein (Rrp9), mRNA.
ACCESSION   NM_001108778 XM_001071554 XM_343469
VERSION     NM_001108778.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1550)
  AUTHORS   Chen S, Blank MF, Iyer A, Huang B, Wang L, Grummt I and Voit R.
  TITLE     SIRT7-dependent deacetylation of the U3-55k protein controls
            pre-rRNA processing
  JOURNAL   Nat Commun 7, 10734 (2016)
   PUBMED   26867678
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1550)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 1550)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 1550)
  AUTHORS   Pluk H, Soffner J, Luhrmann R and van Venrooij WJ.
  TITLE     cDNA cloning and characterization of the human U3 small nucleolar
            ribonucleoprotein complex-associated 55-kilodalton protein
  JOURNAL   Mol Cell Biol 18 (1), 488-498 (1998)
   PUBMED   9418896
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473954.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_343469.3, XM_001071554.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158778.1, FQ230405.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1550
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..1550
                     /gene="Rrp9"
                     /gene_synonym="Rnu3ip2"
                     /note="ribosomal RNA processing 9, U3 small nucleolar RNA
                     binding protein"
                     /db_xref="GeneID:363134"
                     /db_xref="RGD:1307881"
     exon            1..139
                     /gene="Rrp9"
                     /gene_synonym="Rnu3ip2"
                     /inference="alignment:Splign:2.1.0"
     CDS             44..1480
                     /gene="Rrp9"
                     /gene_synonym="Rnu3ip2"
                     /note="RRP9, small subunit (SSU) processome component,
                     homolog; RNA, U3 small nucleolar interacting protein 2;
                     ribosomal RNA processing 9, small subunit (SSU) processome
                     component, homolog"
                     /codon_start=1
                     /product="U3 small nucleolar RNA-interacting protein 2"
                     /protein_id="NP_001102248.1"
                     /db_xref="GeneID:363134"
                     /db_xref="RGD:1307881"
                     /translation="MNSMSTAVATRKRAKPAPGPGAAPVDGKRRRKVDSAASRGKSKG
                     GGKMNEEISSDSESESLAPRKTEEEEEEELEETAQEKKLRLAKLYLEQLRQQEEEKAE
                     ARAFEEDQVAGRLKEDVLEQRGRLQKLVAKEIQAPAPTDIRVLRGHQLSITCLVITPD
                     DLAIFSAAKDCTIIKWSVETGRKLHVIPRAKKGTQGQPSGHSSHILCMAISSDGKYLA
                     SGDRSKLILIWEAQSCQHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNAAEN
                     SYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQLVFYGHQGSIDCIH
                     LINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLHGEPGLEQPFWISSVAALLNTD
                     LVATGSHNACVRLWQCGEGFRQLDPLCDIPLVGFINSLKFSSGGDFLVAGVGQEHRLG
                     RWWRIKEARNSVCIIPLRRVPVSPVAGS"
     exon            140..222
                     /gene="Rrp9"
                     /gene_synonym="Rnu3ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            223..332
                     /gene="Rrp9"
                     /gene_synonym="Rnu3ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            333..400
                     /gene="Rrp9"
                     /gene_synonym="Rnu3ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            401..442
                     /gene="Rrp9"
                     /gene_synonym="Rnu3ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            443..569
                     /gene="Rrp9"
                     /gene_synonym="Rnu3ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            570..694
                     /gene="Rrp9"
                     /gene_synonym="Rnu3ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            695..787
                     /gene="Rrp9"
                     /gene_synonym="Rnu3ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            788..888
                     /gene="Rrp9"
                     /gene_synonym="Rnu3ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            889..1023
                     /gene="Rrp9"
                     /gene_synonym="Rnu3ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            1024..1086
                     /gene="Rrp9"
                     /gene_synonym="Rnu3ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            1087..1232
                     /gene="Rrp9"
                     /gene_synonym="Rnu3ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            1233..1312
                     /gene="Rrp9"
                     /gene_synonym="Rnu3ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            1313..1386
                     /gene="Rrp9"
                     /gene_synonym="Rnu3ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            1387..1550
                     /gene="Rrp9"
                     /gene_synonym="Rnu3ip2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttagcagcca tgtgagttct tcagtagagg ctgcggcacc ttgatgaaca gtatgtcgac
       61 cgccgtggca actcgtaaac gggcaaagcc agctcccggg cccggggcgg ccccggtgga
      121 cggcaagcgg cggcgaaagg tagactctgc tgcaagcaga ggcaagtcca aaggtggcgg
      181 caaaatgaat gaggagattt ccagcgattc tgagagtgag agcttggctc caaggaaaac
      241 agaggaagag gaggaggaag agctggaaga gactgcacaa gaaaagaagc tacgcttggc
      301 caaactctac ctagaacagc ttaggcagca agaggaggag aaggctgaag cccgtgcatt
      361 tgaggaggat caggtggccg ggcgcttgaa ggaggatgtg ctcgagcaga gaggcaggtt
      421 acagaaattg gtggcaaagg agatccaggc cccagctccc actgacattc gagttttgcg
      481 gggccaccag ctctccatta cgtgcttggt catcactccc gatgacctgg ccatcttctc
      541 tgccgccaaa gactgcacca tcataaagtg gagtgtagag actgggcgga agctgcatgt
      601 gatccctcga gccaagaagg gcacccaggg gcagccttca ggccacagca gccatatcct
      661 gtgcatggcc atctcctctg atggcaagta cctcgcctct ggagaccgga gcaagctcat
      721 tctgatatgg gaggcccaga gctgccagca cctgtacacc ttcacgggac accgggacgc
      781 tgtgtcggga ctggccttcc gaagaggtac ccaccagctc tacagcactt cccacgaccg
      841 ctctgtgaag gtgtggaatg cagccgagaa ctcctatgtg gagacactgt tcgggcacca
      901 ggatgctgtg gctgcattgg acgccttgag ccgagagtgc tgtgtgacag ccgggggccg
      961 ggacgggacc gtgcgtgtgt ggaagatccc agaggaatct cagcttgtct tctatggcca
     1021 ccagggttcc attgactgca tccatctgat caacgaggag cacatggtgt cgggtgcaga
     1081 cgatggctct gtggccttgt ggggcctctc caagaagagg ccactcgccc tccagcgcga
     1141 agctcatggg cttcacgggg agccgggcct ggagcagccc ttctggatat cgtccgtggc
     1201 agccctgctt aatacagacc ttgtagccac aggctcccat aatgcctgtg tgcgactttg
     1261 gcagtgtgga gagggcttcc ggcagcttga tcctctctgt gacatccccc tggttggatt
     1321 tatcaacagc ctcaagttct ccagtggtgg ggacttcttg gtggctggag taggacagga
     1381 acacaggctg ggtcgatggt ggaggatcaa agaggctcgg aactcagtct gcatcatccc
     1441 gctccgaagg gtccccgtgt cccctgttgc tggctcctga cacaccctta tttaaggatt
     1501 tccaggcccc gccccctttt gtattaaagc ctcctctttt agactttgtt
//
