LOCUS       NM_001008346            2095 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribosomal RNA processing 8 (Rrp8), mRNA.
ACCESSION   NM_001008346 XM_219127
VERSION     NM_001008346.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2095)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 2095)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 2095)
  AUTHORS   Kumazawa,T., Nishimura,K., Kuroda,T., Ono,W., Yamaguchi,C.,
            Katagiri,N., Tsuchiya,M., Masumoto,H., Nakajima,Y., Murayama,A.,
            Kimura,K. and Yanagisawa,J.
  TITLE     Novel nucleolar pathway connecting intracellular energy status with
            p53 activation
  JOURNAL   J Biol Chem 286 (23), 20861-20869 (2011)
   PUBMED   21471221
REFERENCE   4  (bases 1 to 2095)
  AUTHORS   Murayama,A., Ohmori,K., Fujimura,A., Minami,H., Yasuzawa-Tanaka,K.,
            Kuroda,T., Oie,S., Daitoku,H., Okuwaki,M., Nagata,K., Fukamizu,A.,
            Kimura,K., Shimizu,T. and Yanagisawa,J.
  TITLE     Epigenetic control of rDNA loci in response to intracellular energy
            status
  JOURNAL   Cell 133 (4), 627-639 (2008)
   PUBMED   18485871
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC085119.1.
            
            On Dec 16, 2004 this sequence version replaced XM_219127.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC085119.1, SRR8487226.9568.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMN12840131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2095
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q32"
     gene            1..2095
                     /gene="Rrp8"
                     /gene_synonym="RGD1308302"
                     /note="ribosomal RNA processing 8"
                     /db_xref="GeneID:308911"
                     /db_xref="RGD:1308302"
     exon            1..158
                     /gene="Rrp8"
                     /gene_synonym="RGD1308302"
                     /inference="alignment:Splign:2.1.0"
     CDS             60..1433
                     /gene="Rrp8"
                     /gene_synonym="RGD1308302"
                     /note="cerebral protein 1 homolog"
                     /codon_start=1
                     /product="ribosomal RNA-processing protein 8"
                     /protein_id="NP_001008347.1"
                     /db_xref="GeneID:308911"
                     /db_xref="RGD:1308302"
                     /translation="MFEEPEWVEAAPAIVGLRPVTTQVQAATAPPVKGRKRRHLLATL
                     RALEAASLSQQCPSLPGSDSEEEEEVGRKKRHFQRSSLANVSKEVGKKRKGKCQKQAP
                     FISDSEGKEVERTCHRQAPPLGGISAGEEKGKRKCQEYSYLHPTQSLNSVDQTVHNSR
                     TSTATLDPPKSSRESASPNSSHTLSRKQWRNRQKNKRRHKNKFRPLETQDQVPLKASI
                     EETEVPPAPKSDSQETRAGALRARMTQRLDGARFRYLNEQLYSGPSSAAQCLFQEDPE
                     AFLLYHRGFQRQVKKWPLHPVDRIAKDLRQKPASLVVADFGCGDCRLASSVRNPVHCF
                     DLAALDPRVTVCDMAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVA
                     EVSSRFEDIRTFLGAVTKLGFKVIYKDLTNSHFFLFDFEKTGPPRVGPKAQLSGLKLQ
                     PCLYKHR"
     exon            159..525
                     /gene="Rrp8"
                     /gene_synonym="RGD1308302"
                     /inference="alignment:Splign:2.1.0"
     exon            526..979
                     /gene="Rrp8"
                     /gene_synonym="RGD1308302"
                     /inference="alignment:Splign:2.1.0"
     exon            980..1109
                     /gene="Rrp8"
                     /gene_synonym="RGD1308302"
                     /inference="alignment:Splign:2.1.0"
     exon            1110..1216
                     /gene="Rrp8"
                     /gene_synonym="RGD1308302"
                     /inference="alignment:Splign:2.1.0"
     exon            1217..1313
                     /gene="Rrp8"
                     /gene_synonym="RGD1308302"
                     /inference="alignment:Splign:2.1.0"
     exon            1314..2072
                     /gene="Rrp8"
                     /gene_synonym="RGD1308302"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggacgcgcg ctacacgtgg gccagagcgt agactcctcc aaccctgccg gccaccggta
       61 tgtttgagga gcccgaatgg gtcgaggcgg ccccagccat cgttggcctc cggcccgtga
      121 caacacaggt tcaggcggcg actgccccgc cagtcaaggg ccgtaagcgc cgccatctct
      181 tggctacatt acgagccctg gaagcagcat ctctctccca gcaatgcccc agcctacctg
      241 gcagtgactc tgaggaagag gaggaggtag gaaggaagaa gagacacttc caaaggtcct
      301 cacttgccaa tgtctcaaag gaagtaggga agaaaagaaa agggaagtgt caaaaacagg
      361 caccatttat cagtgactct gaggggaaag aagtggaaag aacatgccac agacaagctc
      421 ctcctcttgg cgggatctct gctggagaag aaaaaggaaa gaggaaatgc caggaatatt
      481 cttatttaca cccaacccag tccctgaaca gtgttgacca aacagttcac aattctagga
      541 caagtactgc tacacttgac ccacccaagt caagccgtga gtctgcatca cctaactcct
      601 cacacaccct gagccgcaag cagtggcgga accggcagaa aaataagcgg agacacaaga
      661 acaaatttcg gccacttgag acacaggacc aggtgcctct caaggcttcc atagaggaga
      721 ctgaggtgcc tcctgctcca aagtcagaca gtcaagagac tagagctgga gccctgcgag
      781 cacgcatgac acaacgcctg gatggggccc gatttcgcta ccttaatgaa cagctgtact
      841 cagggcccag cagtgctgcc caatgcctat tccaggaaga ccctgaggct tttctccttt
      901 atcaccgtgg ctttcagaga caagtaaaga agtggccact gcaccccgtg gaccgcattg
      961 ccaaagatct ccgtcagaag cctgcatcct tagtggtagc tgactttggc tgtggagatt
     1021 gccgcctagc ttcaagtgtt cggaaccccg tgcactgttt tgatttggct gctctggacc
     1081 ccagggtcac tgtgtgtgac atggcccagg tacctctgga ggatgagtct gtggatgtgg
     1141 ctgtgttttg cctttcacta atgggaacca acatcaggga cttccttgag gaggcgaatc
     1201 gagtgctaaa gccagggggt cttctcaaag tagcggaagt cagcagccgc tttgaggata
     1261 ttcggacctt tttgggggct gtgaccaaac ttggctttaa ggtcatctac aaggacctga
     1321 ccaacagcca cttcttcttg tttgactttg aaaagactgg acctcctcga gtaggaccca
     1381 aagcccaact ctcaggcctt aaacttcagc cctgtctcta caagcacagg tgaccaatgg
     1441 acaccgttga aagggagaga tcagactccc atctcagaac tctgaagact gtatctaccc
     1501 aggctctgag ccagaatctg gtaccaccct ctttctgtgc caagaacact gtggtaaagg
     1561 ctccagctca gctctattct aatggagctt tcgtggctac agaaagcatg aaatttcttg
     1621 ggcaggttca agaatgaggt gtttattgtg agggcatgga tgtgtctgga agttttaggt
     1681 cacttcaggt attgtggaaa ctagtcagct gagagttgat ggatctctgg atttcttttt
     1741 atctctcaga aggcatgtgg actctctgct gtgttatctt ctaatctgtg ttgttcacct
     1801 ctgctcatcc atagtttctg ctccttcagc ttcaagactg cagacaggaa gcttttgcca
     1861 catggcaggt cccaatgcca gtttgccact tggggctggg agttatttaa tttctttgtt
     1921 ttttggaact ggaaatcatt taatttttta catcatctca cactagttca ggctgacctc
     1981 aaacaaatgg caatcctgct tcagcgtcct gactattggg atcacaggca tgagccacca
     2041 tattcagctt aagaaatcat ttactctctg aaaaaaaaaa aaaaaaaaaa aaaaa
//
